Wall clock time and date at job start Fri Apr 10 2020 18:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45752 * 117.94404 * 2 1 4 4 C 1.52919 * 110.49010 * 199.07813 * 3 2 1 5 5 C 1.53350 * 108.67066 * 309.24517 * 4 3 2 6 6 C 1.53066 * 108.45560 * 67.50836 * 5 4 3 7 7 H 1.09009 * 109.39852 * 71.24859 * 6 5 4 8 8 N 1.46496 * 109.40272 * 190.98778 * 6 5 4 9 9 C 1.34776 * 120.00213 * 205.00100 * 8 6 5 10 10 O 1.21588 * 120.00318 * 354.97630 * 9 8 6 11 11 N 1.34781 * 120.00041 * 174.96747 * 9 8 6 12 12 C 1.47078 * 120.87997 * 184.71683 * 11 9 8 13 13 C 1.53698 * 108.27265 * 128.76072 * 12 11 9 14 14 N 1.46900 * 109.26048 * 54.08262 * 13 12 11 15 15 C 1.46899 * 111.00185 * 172.60631 * 14 13 12 16 16 C 1.50701 * 109.47016 * 294.30189 * 15 14 13 17 17 H 1.08004 * 120.00190 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99790 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99998 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47440 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47518 * 120.00009 * 20 18 16 23 23 H 1.48502 * 109.47093 * 240.00134 * 20 18 16 24 24 C 1.46892 * 111.26719 * 296.75962 * 14 13 12 25 25 C 1.47074 * 120.87971 * 5.00083 * 11 9 8 26 26 C 1.33354 * 117.94928 * 179.97438 * 2 1 3 27 27 O 1.21274 * 118.24391 * 357.80001 * 26 2 1 28 28 H 1.08996 * 109.47223 * 90.00664 * 1 2 3 29 29 H 1.09002 * 109.46596 * 210.00013 * 1 2 3 30 30 H 1.08998 * 109.47538 * 330.00009 * 1 2 3 31 31 H 1.08999 * 109.30355 * 78.75613 * 3 2 1 32 32 H 1.09003 * 109.13147 * 319.28214 * 3 2 1 33 33 H 1.08998 * 109.60406 * 189.49221 * 4 3 2 34 34 H 1.09001 * 109.60476 * 68.99770 * 4 3 2 35 35 H 1.08994 * 109.67663 * 187.26592 * 5 4 3 36 36 H 1.09004 * 109.67113 * 307.76009 * 5 4 3 37 37 H 0.97001 * 119.99861 * 25.00649 * 8 6 5 38 38 H 1.08998 * 109.62957 * 248.52296 * 12 11 9 39 39 H 1.08999 * 109.62824 * 9.11008 * 12 11 9 40 40 H 1.08998 * 109.64735 * 294.07540 * 13 12 11 41 41 H 1.09005 * 109.42335 * 173.94886 * 13 12 11 42 42 H 1.08994 * 109.47039 * 54.30474 * 15 14 13 43 43 H 1.08998 * 109.46690 * 174.30264 * 15 14 13 44 44 H 0.97002 * 120.00212 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.49486 * 303.14069 * 24 14 13 46 46 H 1.08997 * 109.49322 * 183.06272 * 24 14 13 47 47 H 1.08997 * 109.63178 * 350.89494 * 25 11 9 48 48 H 1.09012 * 109.63019 * 111.47579 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1261 -0.4682 5 6 4.2493 -0.0012 0.3396 6 6 3.5840 -1.3242 -0.0476 7 1 3.8883 -1.6005 -1.0573 8 7 4.0015 -2.3711 0.8882 9 6 3.9833 -3.6633 0.5057 10 8 3.5349 -3.9690 -0.5824 11 7 4.4623 -4.6167 1.3292 12 6 4.5471 -6.0186 0.8924 13 6 5.9725 -6.5235 1.1670 14 7 6.3048 -6.2924 2.5791 15 6 7.5883 -6.9167 2.9270 16 6 7.4631 -8.4148 2.8210 17 1 6.5243 -8.8587 2.5245 18 6 8.5476 -9.2187 3.1016 19 7 9.6910 -8.6781 3.4622 20 14 8.3928 -11.0755 2.9696 21 1 7.0131 -11.4286 2.5491 22 1 9.3619 -11.5830 1.9654 23 1 8.6801 -11.6913 4.2901 24 6 6.3139 -4.8582 2.8965 25 6 4.9082 -4.2838 2.6906 26 6 2.0901 -1.1780 0.0005 27 8 1.4160 -2.1853 0.0420 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 2.1397 1.6999 1.0090 32 1 1.6259 1.9689 -0.6718 33 1 4.1383 2.0566 -0.3043 34 1 3.6100 0.8727 -1.5282 35 1 5.3142 -0.0454 0.1118 36 1 4.1093 0.1819 1.4050 37 1 4.2910 -2.1343 1.7832 38 1 3.8287 -6.6198 1.4496 39 1 4.3335 -6.0832 -0.1745 40 1 6.6796 -5.9870 0.5344 41 1 6.0271 -7.5904 0.9504 42 1 8.3600 -6.5671 2.2413 43 1 7.8592 -6.6460 3.9474 44 1 10.4539 -9.2437 3.6600 45 1 7.0163 -4.3447 2.2398 46 1 6.6160 -4.7172 3.9342 47 1 4.9334 -3.2011 2.8132 48 1 4.2238 -4.7216 3.4175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601581136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:45 Heat of formation + Delta-G solvation = -35.877228 kcal Electronic energy + Delta-G solvation = -28458.292072 eV Core-core repulsion = 24548.915909 eV Total energy + Delta-G solvation = -3909.376163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.05558 -39.77677 -37.57422 -36.75945 -35.40778 -34.33913 -32.84509 -32.28136 -30.66813 -29.23031 -27.87977 -27.42854 -25.48566 -24.29999 -23.04183 -22.75988 -22.08639 -20.71839 -19.51578 -18.95187 -17.90087 -17.10053 -16.79180 -16.58232 -16.30798 -15.63606 -15.15791 -14.81538 -14.59189 -14.49434 -14.39751 -14.19806 -13.88616 -13.71255 -13.66698 -13.43816 -12.95105 -12.86008 -12.53387 -12.42970 -12.13341 -11.94163 -11.89021 -11.70032 -11.38625 -11.27184 -11.08402 -10.82116 -10.70436 -10.56960 -10.46795 -10.22196 -9.90766 -9.79920 -9.23751 -9.05179 -8.98138 -8.46949 -8.26342 -7.29228 -6.04968 -4.06323 2.29252 2.65429 2.92301 3.31030 3.38661 3.43756 3.45065 3.89386 4.19712 4.22430 4.26577 4.40093 4.41619 4.79246 4.84389 4.87955 4.99051 5.06015 5.21223 5.25349 5.29482 5.30388 5.30627 5.40196 5.46850 5.48695 5.58545 5.63766 5.71558 5.88355 5.98183 6.08708 6.10183 6.22420 6.33208 6.47642 6.60846 6.72506 7.08120 7.17861 7.24442 7.30136 7.76880 8.01284 8.03227 8.06940 8.15327 8.50071 8.78907 9.01536 9.58333 11.05950 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.032312 B = 0.002406 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.346961 B =11635.115365 C =12072.237718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.113 3.887 4 C -0.132 4.132 5 C -0.131 4.131 6 C 0.160 3.840 7 H 0.117 0.883 8 N -0.735 5.735 9 C 0.713 3.287 10 O -0.579 6.579 11 N -0.624 5.624 12 C 0.134 3.866 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.508 4.508 17 H 0.065 0.935 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.042 3.958 25 C 0.119 3.881 26 C 0.495 3.505 27 O -0.517 6.517 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.397 0.603 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.024 0.976 41 H 0.097 0.903 42 H -0.009 1.009 43 H 0.031 0.969 44 H 0.261 0.739 45 H 0.026 0.974 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.786 24.898 -4.916 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.350 5.350 3 C -0.010 4.010 4 C -0.171 4.171 5 C -0.169 4.169 6 C 0.050 3.950 7 H 0.134 0.866 8 N -0.394 5.394 9 C 0.415 3.585 10 O -0.455 6.455 11 N -0.362 5.362 12 C 0.012 3.988 13 C -0.078 4.078 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.546 4.546 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.088 4.088 25 C -0.004 4.004 26 C 0.280 3.720 27 O -0.391 6.391 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.043 0.957 41 H 0.115 0.885 42 H 0.009 0.991 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.615 23.805 -5.372 27.944 hybrid contribution 0.862 -0.318 0.074 0.921 sum -12.753 23.487 -5.297 27.246 Atomic orbital electron populations 1.21662 0.79720 1.03175 1.01932 1.47354 1.07343 1.05913 1.74352 1.21430 0.93181 0.84776 1.01621 1.21847 0.94635 0.99614 1.00956 1.21971 1.01229 0.92433 1.01287 1.20544 0.89809 0.87946 0.96730 0.86555 1.44983 1.72580 1.04741 1.17088 1.15709 0.78392 0.80351 0.84079 1.90905 1.51453 1.80784 1.22372 1.47353 1.66553 1.08161 1.14095 1.21822 0.97643 0.78685 1.00697 1.22458 0.93672 1.02225 0.89423 1.62062 1.36511 1.09000 1.18472 1.19724 0.83031 0.94453 0.95893 1.21195 0.97187 0.90684 1.45548 0.91689 1.24992 0.95215 0.99065 0.95360 1.69964 1.01694 1.35319 1.46863 0.86437 0.78178 0.85188 0.77613 1.19574 1.21120 1.21034 1.22375 0.94360 0.91031 1.01051 1.21746 0.96807 0.98312 0.83576 1.20809 0.91495 0.82880 0.76775 1.90774 1.65636 1.35458 1.47223 0.92770 0.90219 0.91430 0.91607 0.90552 0.88951 0.90414 0.89456 0.90459 0.76576 0.91195 0.89359 0.95748 0.88510 0.99141 0.95096 0.92970 0.95556 0.90186 0.91482 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.24 59.85 0.61 1.23 16 2 N -0.61 -5.44 3.21 -182.85 -0.59 -6.03 16 3 C 0.11 0.53 6.32 -4.49 -0.03 0.50 16 4 C -0.13 -0.54 6.02 -26.59 -0.16 -0.70 16 5 C -0.13 -0.77 5.50 -26.52 -0.15 -0.92 16 6 C 0.16 1.72 2.68 -69.30 -0.19 1.54 16 7 H 0.12 1.43 7.65 -51.92 -0.40 1.03 16 8 N -0.74 -9.26 4.88 -60.02 -0.29 -9.55 16 9 C 0.71 12.14 7.80 -86.91 -0.68 11.46 16 10 O -0.58 -12.04 14.83 -3.02 -0.04 -12.08 16 11 N -0.62 -10.31 3.00 -177.91 -0.53 -10.85 16 12 C 0.13 2.39 6.61 -3.36 -0.02 2.36 16 13 C 0.05 1.02 5.47 -3.46 -0.02 1.00 16 14 N -0.54 -11.27 4.62 -235.47 -1.09 -12.36 16 15 C 0.19 4.95 4.72 -4.98 -0.02 4.92 16 16 C -0.51 -14.04 8.41 -34.44 -0.29 -14.33 16 17 H 0.06 1.78 7.13 -52.48 -0.37 1.41 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.04 0.70 5.62 -3.71 -0.02 0.68 16 25 C 0.12 1.68 6.59 -3.61 -0.02 1.65 16 26 C 0.50 6.28 7.20 -11.87 -0.09 6.19 16 27 O -0.52 -9.22 14.74 -2.75 -0.04 -9.26 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.82 7.13 -51.93 -0.37 0.45 16 30 H 0.07 0.34 8.01 -51.93 -0.42 -0.08 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.24 8.10 -51.93 -0.42 -0.18 16 33 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 37 H 0.40 3.96 6.08 -40.82 -0.25 3.71 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.09 1.59 7.09 -51.93 -0.37 1.23 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 42 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 43 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 47 H 0.07 0.70 5.63 -51.93 -0.29 0.41 16 48 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -36.92 375.33 -10.23 -47.15 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.84 Total: -0.53 kcal Atomic # 6 Polarization: 18.21 SS G_CDS: -1.17 Total: 17.05 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -1.77 Total: -64.52 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.09 Total: -21.34 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.92 -10.23 -47.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601581136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.269 kcal (2) G-P(sol) polarization free energy of solvation -36.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds