Wall clock time and date at job start Fri Apr 10 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45752 * 117.94404 * 2 1 4 4 C 1.52919 * 110.49010 * 199.07813 * 3 2 1 5 5 C 1.53350 * 108.67066 * 309.24517 * 4 3 2 6 6 C 1.53066 * 108.45560 * 67.50836 * 5 4 3 7 7 H 1.09009 * 109.39852 * 71.24859 * 6 5 4 8 8 N 1.46496 * 109.40272 * 190.98778 * 6 5 4 9 9 C 1.34776 * 120.00213 * 205.00100 * 8 6 5 10 10 O 1.21588 * 120.00318 * 354.97630 * 9 8 6 11 11 N 1.34781 * 120.00041 * 174.96747 * 9 8 6 12 12 C 1.47078 * 120.87997 * 184.71683 * 11 9 8 13 13 C 1.53698 * 108.27265 * 128.76072 * 12 11 9 14 14 N 1.46900 * 109.26048 * 54.08262 * 13 12 11 15 15 C 1.46899 * 111.00185 * 172.60631 * 14 13 12 16 16 C 1.50701 * 109.47016 * 294.30189 * 15 14 13 17 17 H 1.08004 * 120.00190 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99790 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99998 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47440 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47518 * 120.00009 * 20 18 16 23 23 H 1.48502 * 109.47093 * 240.00134 * 20 18 16 24 24 C 1.46892 * 111.26719 * 296.75962 * 14 13 12 25 25 C 1.47074 * 120.87971 * 5.00083 * 11 9 8 26 26 C 1.33354 * 117.94928 * 179.97438 * 2 1 3 27 27 O 1.21274 * 118.24391 * 357.80001 * 26 2 1 28 28 H 1.08996 * 109.47223 * 90.00664 * 1 2 3 29 29 H 1.09002 * 109.46596 * 210.00013 * 1 2 3 30 30 H 1.08998 * 109.47538 * 330.00009 * 1 2 3 31 31 H 1.08999 * 109.30355 * 78.75613 * 3 2 1 32 32 H 1.09003 * 109.13147 * 319.28214 * 3 2 1 33 33 H 1.08998 * 109.60406 * 189.49221 * 4 3 2 34 34 H 1.09001 * 109.60476 * 68.99770 * 4 3 2 35 35 H 1.08994 * 109.67663 * 187.26592 * 5 4 3 36 36 H 1.09004 * 109.67113 * 307.76009 * 5 4 3 37 37 H 0.97001 * 119.99861 * 25.00649 * 8 6 5 38 38 H 1.08998 * 109.62957 * 248.52296 * 12 11 9 39 39 H 1.08999 * 109.62824 * 9.11008 * 12 11 9 40 40 H 1.08998 * 109.64735 * 294.07540 * 13 12 11 41 41 H 1.09005 * 109.42335 * 173.94886 * 13 12 11 42 42 H 1.08994 * 109.47039 * 54.30474 * 15 14 13 43 43 H 1.08998 * 109.46690 * 174.30264 * 15 14 13 44 44 H 0.97002 * 120.00212 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.49486 * 303.14069 * 24 14 13 46 46 H 1.08997 * 109.49322 * 183.06272 * 24 14 13 47 47 H 1.08997 * 109.63178 * 350.89494 * 25 11 9 48 48 H 1.09012 * 109.63019 * 111.47579 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1261 -0.4682 5 6 4.2493 -0.0012 0.3396 6 6 3.5840 -1.3242 -0.0476 7 1 3.8883 -1.6005 -1.0573 8 7 4.0015 -2.3711 0.8882 9 6 3.9833 -3.6633 0.5057 10 8 3.5349 -3.9690 -0.5824 11 7 4.4623 -4.6167 1.3292 12 6 4.5471 -6.0186 0.8924 13 6 5.9725 -6.5235 1.1670 14 7 6.3048 -6.2924 2.5791 15 6 7.5883 -6.9167 2.9270 16 6 7.4631 -8.4148 2.8210 17 1 6.5243 -8.8587 2.5245 18 6 8.5476 -9.2187 3.1016 19 7 9.6910 -8.6781 3.4622 20 14 8.3928 -11.0755 2.9696 21 1 7.0131 -11.4286 2.5491 22 1 9.3619 -11.5830 1.9654 23 1 8.6801 -11.6913 4.2901 24 6 6.3139 -4.8582 2.8965 25 6 4.9082 -4.2838 2.6906 26 6 2.0901 -1.1780 0.0005 27 8 1.4160 -2.1853 0.0420 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 2.1397 1.6999 1.0090 32 1 1.6259 1.9689 -0.6718 33 1 4.1383 2.0566 -0.3043 34 1 3.6100 0.8727 -1.5282 35 1 5.3142 -0.0454 0.1118 36 1 4.1093 0.1819 1.4050 37 1 4.2910 -2.1343 1.7832 38 1 3.8287 -6.6198 1.4496 39 1 4.3335 -6.0832 -0.1745 40 1 6.6796 -5.9870 0.5344 41 1 6.0271 -7.5904 0.9504 42 1 8.3600 -6.5671 2.2413 43 1 7.8592 -6.6460 3.9474 44 1 10.4539 -9.2437 3.6600 45 1 7.0163 -4.3447 2.2398 46 1 6.6160 -4.7172 3.9342 47 1 4.9334 -3.2011 2.8132 48 1 4.2238 -4.7216 3.4175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601581136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:44 Heat of formation + Delta-G solvation = -63.890933 kcal Electronic energy + Delta-G solvation = -28459.506838 eV Core-core repulsion = 24548.915909 eV Total energy + Delta-G solvation = -3910.590929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.01662 -40.96574 -39.06106 -37.55327 -36.39096 -35.98367 -34.43472 -33.54404 -32.03313 -30.35754 -29.35359 -28.06529 -27.19176 -25.21667 -24.37897 -23.90837 -23.31980 -22.19950 -20.66721 -19.92798 -18.99983 -18.51617 -17.99251 -17.64736 -17.42380 -16.85053 -16.50194 -16.35009 -15.98939 -15.63947 -15.46683 -15.38173 -15.17215 -14.97714 -14.70056 -14.43235 -14.27274 -14.01455 -13.62476 -13.54964 -13.22518 -13.10387 -12.96947 -12.75617 -12.60278 -12.42804 -12.35068 -12.31750 -12.22437 -12.16237 -11.84760 -11.74452 -11.36958 -11.22814 -11.13389 -10.62077 -10.16311 -9.70115 -9.62959 -9.03487 -8.20899 -6.30079 1.27971 1.41370 1.42473 1.55753 1.78177 1.91410 2.25083 2.40732 2.82765 3.11532 3.22784 3.53359 3.62910 3.82022 3.92200 3.98924 4.04644 4.12512 4.24195 4.25854 4.41456 4.43450 4.49213 4.53974 4.60533 4.69115 4.71186 4.80333 4.84476 4.91897 4.93632 5.01162 5.04980 5.07277 5.16684 5.22606 5.24441 5.37526 5.43654 5.47177 5.64412 5.85666 6.03992 6.25817 6.42427 6.59206 6.85465 6.88170 7.16311 7.39562 7.51438 8.90332 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.032312 B = 0.002406 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.346961 B =11635.115365 C =12072.237718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.605 5.605 3 C 0.103 3.897 4 C -0.128 4.128 5 C -0.121 4.121 6 C 0.155 3.845 7 H 0.095 0.905 8 N -0.720 5.720 9 C 0.708 3.292 10 O -0.622 6.622 11 N -0.629 5.629 12 C 0.146 3.854 13 C 0.061 3.939 14 N -0.541 5.541 15 C 0.210 3.790 16 C -0.523 4.523 17 H 0.063 0.937 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.278 1.278 24 C 0.040 3.960 25 C 0.127 3.873 26 C 0.487 3.513 27 O -0.583 6.583 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.411 0.589 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.013 0.987 41 H 0.079 0.921 42 H -0.039 1.039 43 H 0.013 0.987 44 H 0.264 0.736 45 H 0.024 0.976 46 H 0.092 0.908 47 H 0.110 0.890 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.313 27.583 -4.184 30.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.339 5.339 3 C -0.018 4.018 4 C -0.166 4.166 5 C -0.159 4.159 6 C 0.046 3.954 7 H 0.113 0.887 8 N -0.379 5.379 9 C 0.410 3.590 10 O -0.502 6.502 11 N -0.366 5.366 12 C 0.022 3.978 13 C -0.069 4.069 14 N -0.266 5.266 15 C 0.084 3.916 16 C -0.561 4.561 17 H 0.081 0.919 18 C -0.195 4.195 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.206 1.206 23 H -0.203 1.203 24 C -0.089 4.089 25 C 0.004 3.996 26 C 0.273 3.727 27 O -0.462 6.462 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.251 0.749 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.031 0.969 41 H 0.098 0.902 42 H -0.022 1.022 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.110 0.890 47 H 0.128 0.872 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.143 26.604 -4.611 30.481 hybrid contribution 0.990 -1.012 -0.176 1.427 sum -13.154 25.592 -4.787 29.170 Atomic orbital electron populations 1.21753 0.79363 1.03478 1.02188 1.47507 1.07910 1.06431 1.72042 1.21832 0.93479 0.82772 1.03689 1.21907 0.94356 1.00201 1.00137 1.22011 1.01472 0.89822 1.02616 1.20776 0.89362 0.89670 0.95568 0.88690 1.44862 1.71455 1.03507 1.18051 1.15934 0.78032 0.81565 0.83479 1.90872 1.53302 1.81711 1.24329 1.47378 1.66626 1.07555 1.15009 1.21559 0.95930 0.79876 1.00460 1.22330 0.94781 1.01142 0.88609 1.61974 1.33732 1.11820 1.19070 1.19368 0.84267 0.94005 0.93986 1.21499 0.97211 0.91981 1.45418 0.91882 1.25867 0.94816 1.03966 0.94876 1.70074 1.02463 1.37156 1.47680 0.85366 0.78401 0.79259 0.77792 1.18868 1.20595 1.20331 1.22507 0.96385 0.88366 1.01632 1.21850 0.94669 1.00847 0.82251 1.21148 0.92076 0.83192 0.76245 1.90746 1.66954 1.37831 1.50657 0.92598 0.93207 0.87722 0.89333 0.88276 0.85526 0.91134 0.88278 0.88726 0.74891 0.90909 0.89977 0.96852 0.90247 1.02181 0.96909 0.92687 0.95792 0.88997 0.87180 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 10.24 127.77 1.31 2.41 16 2 N -0.61 -9.64 3.21 -851.60 -2.73 -12.37 16 3 C 0.10 0.56 6.32 86.49 0.55 1.11 16 4 C -0.13 -0.53 6.02 30.68 0.18 -0.35 16 5 C -0.12 -1.03 5.50 30.73 0.17 -0.86 16 6 C 0.16 3.21 2.68 44.11 0.12 3.33 16 7 H 0.10 2.38 7.65 -2.38 -0.02 2.37 16 8 N -0.72 -17.30 4.88 -462.08 -2.26 -19.56 16 9 C 0.71 24.16 7.80 179.05 1.40 25.56 16 10 O -0.62 -26.81 14.83 3.95 0.06 -26.75 16 11 N -0.63 -20.54 3.00 -835.04 -2.51 -23.05 16 12 C 0.15 5.27 6.61 86.50 0.57 5.84 16 13 C 0.06 2.47 5.47 86.54 0.47 2.95 16 14 N -0.54 -23.09 4.62 -898.91 -4.15 -27.24 16 15 C 0.21 11.03 4.72 85.56 0.40 11.43 16 16 C -0.52 -29.49 8.41 25.60 0.22 -29.27 16 17 H 0.06 3.51 7.13 -2.91 -0.02 3.49 16 18 C 0.00 0.16 5.46 84.66 0.46 0.62 16 19 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 20 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 24 C 0.04 1.32 5.62 86.38 0.49 1.81 16 25 C 0.13 3.32 6.59 86.35 0.57 3.89 16 26 C 0.49 12.21 7.20 87.72 0.63 12.84 16 27 O -0.58 -21.59 14.74 4.94 0.07 -21.52 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 1.05 7.13 -2.39 -0.02 1.04 16 30 H 0.10 0.73 8.01 -2.39 -0.02 0.72 16 31 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.10 0.17 8.10 -2.39 -0.02 0.15 16 33 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.07 0.44 8.12 -2.39 -0.02 0.42 16 35 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.53 8.10 -2.39 -0.02 0.51 16 37 H 0.41 7.10 6.08 -92.71 -0.56 6.54 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.08 3.09 7.09 -2.39 -0.02 3.07 16 40 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 3.48 6.67 -2.38 -0.02 3.47 16 42 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 43 H 0.01 0.71 7.97 -2.39 -0.02 0.69 16 44 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 45 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.09 2.82 7.99 -2.39 -0.02 2.80 16 47 H 0.11 1.94 5.63 -2.39 -0.01 1.92 16 48 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -85.30 375.33 -1.28 -86.58 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.39 Total: 11.58 kcal Atomic # 6 Polarization: 33.76 SS G_CDS: 7.54 Total: 41.30 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -11.36 Total: -137.72 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: 0.13 Total: -48.27 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -85.30 -1.28 -86.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601581136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.687 kcal (2) G-P(sol) polarization free energy of solvation -85.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds