Wall clock time and date at job start Fri Apr 10 2020 18:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45752 * 117.94529 * 2 1 4 4 C 1.52923 * 110.48809 * 160.92602 * 3 2 1 5 5 C 1.53344 * 108.67588 * 50.75415 * 4 3 2 6 6 C 1.53081 * 108.42251 * 292.47316 * 5 4 3 7 7 H 1.08996 * 109.39421 * 288.85169 * 6 5 4 8 8 N 1.46500 * 109.40010 * 169.02657 * 6 5 4 9 9 C 1.34774 * 119.99812 * 154.82371 * 8 6 5 10 10 O 1.21582 * 120.00057 * 4.93089 * 9 8 6 11 11 N 1.34775 * 120.00112 * 184.92861 * 9 8 6 12 12 C 1.47085 * 120.87754 * 354.74948 * 11 9 8 13 13 C 1.53237 * 108.52226 * 231.20486 * 12 11 9 14 14 N 1.46893 * 109.34487 * 306.17533 * 13 12 11 15 15 C 1.46897 * 111.00552 * 187.25043 * 14 13 12 16 16 C 1.50694 * 109.47602 * 169.99808 * 15 14 13 17 17 H 1.08004 * 119.99813 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00356 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99632 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46965 * 359.97438 * 20 18 16 22 22 H 1.48489 * 109.47186 * 119.99760 * 20 18 16 23 23 H 1.48500 * 109.47003 * 239.99873 * 20 18 16 24 24 C 1.46899 * 111.27129 * 63.10111 * 14 13 12 25 25 C 1.47073 * 120.88428 * 174.77901 * 11 9 8 26 26 C 1.33237 * 117.98299 * 180.02562 * 2 1 3 27 27 O 1.21275 * 118.15790 * 2.21798 * 26 2 1 28 28 H 1.08999 * 109.47270 * 89.99917 * 1 2 3 29 29 H 1.08999 * 109.47215 * 209.99926 * 1 2 3 30 30 H 1.09003 * 109.46997 * 329.99769 * 1 2 3 31 31 H 1.09001 * 109.30212 * 40.61784 * 3 2 1 32 32 H 1.08999 * 109.30321 * 281.23714 * 3 2 1 33 33 H 1.08998 * 109.60356 * 290.99942 * 4 3 2 34 34 H 1.08996 * 109.73943 * 170.58826 * 4 3 2 35 35 H 1.08992 * 109.67752 * 172.73745 * 5 4 3 36 36 H 1.08999 * 109.70304 * 52.21962 * 5 4 3 37 37 H 0.97007 * 119.99916 * 334.83032 * 8 6 5 38 38 H 1.09002 * 109.62561 * 111.49973 * 12 11 9 39 39 H 1.08997 * 109.63037 * 350.92508 * 12 11 9 40 40 H 1.09002 * 109.49118 * 186.21028 * 13 12 11 41 41 H 1.08996 * 109.48972 * 66.13600 * 13 12 11 42 42 H 1.08996 * 109.47205 * 290.00658 * 15 14 13 43 43 H 1.09009 * 109.46723 * 49.99970 * 15 14 13 44 44 H 0.96998 * 119.99778 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.49057 * 56.85451 * 24 14 13 46 46 H 1.08997 * 109.50035 * 176.94006 * 24 14 13 47 47 H 1.09001 * 109.62763 * 9.07922 * 25 11 9 48 48 H 1.09008 * 109.78954 * 248.59360 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5948 1.1260 0.4681 5 6 4.2493 -0.0012 -0.3397 6 6 3.5838 -1.3240 0.0485 7 1 3.8869 -1.5989 1.0588 8 7 4.0010 -2.3716 -0.8867 9 6 3.9860 -3.6632 -0.5022 10 8 3.5422 -3.9678 0.5879 11 7 4.4628 -4.6172 -1.3262 12 6 4.8978 -4.2867 -2.6918 13 6 4.2077 -5.2454 -3.6679 14 7 4.4641 -6.6308 -3.2525 15 6 3.9660 -7.5819 -4.2551 16 6 4.4580 -8.9668 -3.9219 17 1 5.0784 -9.1247 -3.0521 18 6 4.1161 -10.0323 -4.7275 19 7 3.3602 -9.8400 -5.7864 20 14 4.7254 -11.7490 -4.3141 21 1 5.5519 -11.6975 -3.0814 22 1 3.5635 -12.6471 -4.0943 23 1 5.5459 -12.2671 -5.4382 24 6 3.8845 -6.9070 -1.9313 25 6 4.5614 -6.0164 -0.8839 26 6 2.0901 -1.1766 -0.0005 27 8 1.4152 -2.1833 -0.0424 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6270 1.9718 0.6697 32 1 2.1398 1.6998 -1.0090 33 1 3.6101 0.8726 1.5281 34 1 4.1401 2.0558 0.3065 35 1 5.3142 -0.0455 -0.1119 36 1 4.1093 0.1811 -1.4052 37 1 4.2882 -2.1355 -1.7828 38 1 5.9791 -4.4010 -2.7694 39 1 4.6176 -3.2600 -2.9270 40 1 4.6015 -5.0878 -4.6721 41 1 3.1340 -5.0574 -3.6643 42 1 2.8760 -7.5734 -4.2539 43 1 4.3305 -7.2943 -5.2414 44 1 3.1201 -10.5895 -6.3534 45 1 2.8153 -6.6958 -1.9518 46 1 4.0440 -7.9545 -1.6758 47 1 4.0587 -6.1332 0.0762 48 1 5.6095 -6.2993 -0.7852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601581137.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:46 Heat of formation + Delta-G solvation = -64.889283 kcal Electronic energy + Delta-G solvation = -28554.852623 eV Core-core repulsion = 24644.218402 eV Total energy + Delta-G solvation = -3910.634220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02486 -40.98172 -39.08612 -37.56531 -36.39372 -35.99422 -34.45242 -33.54589 -32.06736 -30.37839 -29.36719 -28.08979 -27.20714 -25.22818 -24.39600 -23.92909 -23.32082 -22.21314 -20.71740 -19.88366 -19.00299 -18.53689 -18.01434 -17.67659 -17.41810 -16.87012 -16.54065 -16.26734 -16.03193 -15.75013 -15.46984 -15.34481 -15.16533 -15.00732 -14.74187 -14.39239 -14.29563 -14.05947 -13.62138 -13.57408 -13.24777 -13.13968 -12.93005 -12.77265 -12.61792 -12.45290 -12.36758 -12.33260 -12.18924 -12.16679 -11.83337 -11.75820 -11.38416 -11.22090 -11.14632 -10.63867 -10.16659 -9.73410 -9.63880 -9.09441 -8.22238 -6.32185 1.27429 1.41287 1.41756 1.55648 1.77363 1.92874 2.23895 2.39820 2.83669 3.09786 3.19524 3.53558 3.63964 3.83172 3.92054 3.98871 4.04595 4.11469 4.22765 4.26506 4.39777 4.40903 4.46776 4.54932 4.59759 4.67518 4.68988 4.79528 4.82609 4.88912 4.91530 4.99364 5.06129 5.08494 5.13831 5.20059 5.24731 5.38635 5.43330 5.46205 5.62519 5.85748 6.00843 6.21156 6.41804 6.54403 6.83376 6.88374 7.15961 7.37616 7.51922 8.89477 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.002492 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.164201 B =11235.461177 C =11405.787596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.605 5.605 3 C 0.101 3.899 4 C -0.127 4.127 5 C -0.120 4.120 6 C 0.157 3.843 7 H 0.100 0.900 8 N -0.719 5.719 9 C 0.708 3.292 10 O -0.623 6.623 11 N -0.629 5.629 12 C 0.129 3.871 13 C 0.036 3.964 14 N -0.532 5.532 15 C 0.208 3.792 16 C -0.522 4.522 17 H 0.067 0.933 18 C 0.000 4.000 19 N -0.936 5.936 20 Si 0.971 3.029 21 H -0.261 1.261 22 H -0.282 1.282 23 H -0.276 1.276 24 C 0.057 3.943 25 C 0.146 3.854 26 C 0.483 3.517 27 O -0.587 6.587 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.411 0.589 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.007 0.993 42 H -0.047 1.047 43 H 0.014 0.986 44 H 0.264 0.736 45 H -0.001 1.001 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 30.489 10.555 32.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.338 5.338 3 C -0.020 4.020 4 C -0.165 4.165 5 C -0.158 4.158 6 C 0.048 3.952 7 H 0.118 0.882 8 N -0.378 5.378 9 C 0.410 3.590 10 O -0.503 6.503 11 N -0.366 5.366 12 C 0.006 3.994 13 C -0.093 4.093 14 N -0.257 5.257 15 C 0.082 3.918 16 C -0.560 4.560 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.577 5.577 20 Si 0.795 3.205 21 H -0.185 1.185 22 H -0.208 1.208 23 H -0.202 1.202 24 C -0.073 4.073 25 C 0.022 3.978 26 C 0.269 3.731 27 O -0.466 6.466 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.251 0.749 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.025 0.975 42 H -0.029 1.029 43 H 0.032 0.968 44 H 0.073 0.927 45 H 0.017 0.983 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.373 29.630 11.216 31.861 hybrid contribution -1.418 -1.383 -0.737 2.114 sum 1.955 28.247 10.479 30.192 Atomic orbital electron populations 1.21751 0.79572 1.03301 1.02116 1.47490 1.07804 1.06584 1.71939 1.21855 0.93816 0.82650 1.03634 1.21910 0.94050 1.00331 1.00251 1.22015 1.01727 0.89568 1.02445 1.20795 0.88874 0.89778 0.95790 0.88198 1.44870 1.71507 1.03528 1.17886 1.15937 0.77804 0.81646 0.83654 1.90870 1.53249 1.81734 1.24420 1.47380 1.67048 1.07646 1.14514 1.21861 1.00530 0.98156 0.78850 1.22552 0.97281 0.89415 1.00100 1.62036 1.58598 1.02496 1.02575 1.19392 0.90880 0.91189 0.90350 1.21494 1.31087 0.92410 1.11041 0.91493 1.25940 0.95240 1.03810 0.94790 1.70097 1.38138 1.32924 1.16496 0.85306 0.78058 0.78482 0.78620 1.18486 1.20803 1.20157 1.22284 0.94387 1.00438 0.90144 1.21478 1.01493 0.78283 0.96508 1.21290 0.92447 0.83086 0.76239 1.90769 1.67031 1.38122 1.50725 0.92714 0.93632 0.87608 0.88133 0.89713 0.90917 0.85368 0.87603 0.89014 0.74893 0.88436 0.87605 0.88752 0.97459 1.02949 0.96834 0.92690 0.98314 0.89948 0.90219 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.22 127.77 1.31 2.56 16 2 N -0.60 -10.36 3.21 -851.80 -2.73 -13.09 16 3 C 0.10 0.60 6.39 86.49 0.55 1.15 16 4 C -0.13 -0.44 6.02 30.68 0.18 -0.25 16 5 C -0.12 -0.89 5.51 30.74 0.17 -0.72 16 6 C 0.16 3.18 2.68 44.11 0.12 3.30 16 7 H 0.10 2.38 7.65 -2.39 -0.02 2.36 16 8 N -0.72 -17.10 4.87 -462.10 -2.25 -19.35 16 9 C 0.71 24.09 7.80 179.06 1.40 25.48 16 10 O -0.62 -26.88 14.83 3.26 0.05 -26.84 16 11 N -0.63 -20.45 3.01 -835.93 -2.52 -22.97 16 12 C 0.13 3.35 6.54 86.35 0.56 3.92 16 13 C 0.04 1.26 5.62 86.38 0.49 1.75 16 14 N -0.53 -23.48 4.62 -899.85 -4.16 -27.64 16 15 C 0.21 11.34 4.72 85.56 0.40 11.75 16 16 C -0.52 -29.94 8.41 25.60 0.22 -29.73 16 17 H 0.07 3.74 7.13 -2.91 -0.02 3.72 16 18 C 0.00 0.00 5.46 84.65 0.46 0.47 16 19 N -0.94 -57.26 13.29 21.45 0.28 -56.98 16 20 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.06 2.44 5.46 86.38 0.47 2.91 16 25 C 0.15 5.24 6.61 86.35 0.57 5.82 16 26 C 0.48 12.67 7.19 87.73 0.63 13.30 16 27 O -0.59 -23.14 14.79 4.22 0.06 -23.08 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 1.08 7.20 -2.39 -0.02 1.06 16 30 H 0.11 0.91 7.86 -2.39 -0.02 0.89 16 31 H 0.10 0.19 7.92 -2.39 -0.02 0.17 16 32 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.07 0.37 8.12 -2.39 -0.02 0.35 16 34 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 0.47 8.10 -2.39 -0.02 0.45 16 37 H 0.41 7.01 6.12 -92.70 -0.57 6.44 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.11 1.93 5.74 -2.39 -0.01 1.91 16 40 H 0.09 3.06 7.99 -2.39 -0.02 3.04 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H -0.05 -2.88 8.12 -2.39 -0.02 -2.90 16 43 H 0.01 0.78 7.97 -2.38 -0.02 0.76 16 44 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 46 H 0.08 3.72 6.67 -2.39 -0.02 3.71 16 47 H 0.08 3.03 7.04 -2.39 -0.02 3.01 16 48 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 Total: -1.00 -88.83 375.18 -1.31 -90.14 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.39 Total: 11.13 kcal Atomic # 6 Polarization: 34.16 SS G_CDS: 7.53 Total: 41.69 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -11.37 Total: -140.03 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: 0.11 Total: -49.91 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -88.83 -1.31 -90.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601581137.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.255 kcal (2) G-P(sol) polarization free energy of solvation -88.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds