Wall clock time and date at job start Fri Apr 10 2020 18:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 111.00122 * 2 1 4 4 C 1.46903 * 110.99956 * 123.95145 * 2 1 3 5 5 H 1.09001 * 109.49411 * 55.06437 * 4 2 1 6 6 C 1.53032 * 109.49926 * 175.12722 * 4 2 1 7 7 C 1.53044 * 109.54139 * 181.28203 * 6 4 2 8 8 C 1.53185 * 109.34045 * 298.68962 * 7 6 4 9 9 N 1.46921 * 108.78088 * 54.61332 * 8 7 6 10 10 C 1.34777 * 120.63103 * 126.36539 * 9 8 7 11 11 O 1.21592 * 120.00101 * 174.92850 * 10 9 8 12 12 N 1.34778 * 120.00093 * 354.93232 * 10 9 8 13 13 C 1.46498 * 119.99863 * 184.71255 * 12 10 9 14 14 C 1.53045 * 109.45693 * 275.06586 * 13 12 10 15 15 C 1.53196 * 109.31013 * 178.61916 * 14 13 12 16 16 N 1.46920 * 108.77708 * 54.63241 * 15 14 13 17 17 C 1.36934 * 120.63156 * 126.37264 * 16 15 14 18 18 H 1.07999 * 120.00570 * 216.72640 * 17 16 15 19 19 C 1.38816 * 119.99999 * 36.72263 * 17 16 15 20 20 N 1.31621 * 119.99910 * 11.46389 * 19 17 16 21 21 Si 1.86804 * 120.00100 * 191.46152 * 19 17 16 22 22 H 1.48496 * 109.47109 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46904 * 120.00186 * 21 19 17 24 24 H 1.48499 * 109.46981 * 240.00206 * 21 19 17 25 25 C 1.46931 * 118.73986 * 306.39131 * 16 15 14 26 26 C 1.53036 * 109.45936 * 155.00149 * 13 12 10 27 27 C 1.46926 * 118.73857 * 306.39788 * 9 8 7 28 28 H 1.09002 * 109.47553 * 296.04828 * 1 2 3 29 29 H 1.08998 * 109.47052 * 56.04766 * 1 2 3 30 30 H 1.09003 * 109.47044 * 176.04814 * 1 2 3 31 31 H 1.09002 * 109.47214 * 183.95341 * 3 2 1 32 32 H 1.09003 * 109.47136 * 303.95257 * 3 2 1 33 33 H 1.09002 * 109.47211 * 63.95256 * 3 2 1 34 34 H 1.09000 * 109.43192 * 61.28352 * 6 4 2 35 35 H 1.09003 * 109.48928 * 301.32367 * 6 4 2 36 36 H 1.09004 * 109.49835 * 178.71563 * 7 6 4 37 37 H 1.09002 * 109.49054 * 58.65666 * 7 6 4 38 38 H 1.09003 * 109.58961 * 174.40628 * 8 7 6 39 39 H 1.09003 * 109.58614 * 294.68637 * 8 7 6 40 40 H 0.96991 * 119.99514 * 4.70868 * 12 10 9 41 41 H 1.09001 * 109.46156 * 35.02188 * 13 12 10 42 42 H 1.08994 * 109.49800 * 298.56613 * 14 13 12 43 43 H 1.08997 * 109.49941 * 58.66530 * 14 13 12 44 44 H 1.09006 * 109.58094 * 294.84585 * 15 14 13 45 45 H 1.09001 * 109.58835 * 174.42461 * 15 14 13 46 46 H 0.96993 * 119.99993 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.58593 * 293.82373 * 25 16 15 48 48 H 1.09001 * 109.58447 * 173.39846 * 25 16 15 49 49 H 1.09001 * 109.49707 * 301.33078 * 26 13 12 50 50 H 1.08996 * 109.49908 * 61.39587 * 26 13 12 51 51 H 1.09002 * 109.58725 * 173.39401 * 27 9 8 52 52 H 1.09005 * 109.58523 * 293.67009 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.5764 -1.7721 1.1238 6 6 3.5203 -0.8463 1.0375 7 6 4.0673 -1.6711 2.2049 8 6 3.7042 -0.9845 3.5252 9 7 2.2508 -0.7732 3.5644 10 6 1.5201 -1.2173 4.6063 11 8 0.3344 -0.9565 4.6724 12 7 2.1038 -1.9505 5.5749 13 6 1.2913 -2.5201 6.6526 14 6 1.1043 -1.4765 7.7563 15 6 0.2257 -2.0638 8.8653 16 7 0.8225 -3.3259 9.3230 17 6 1.0895 -3.5305 10.6504 18 1 1.9731 -4.0768 10.9456 19 6 0.2245 -3.0355 11.6167 20 7 -0.9567 -2.5718 11.2672 21 14 0.7369 -3.0277 13.4131 22 1 2.1014 -3.5992 13.5411 23 1 0.7340 -1.6328 13.9225 24 1 -0.2179 -3.8454 14.2036 25 6 1.1276 -4.3644 8.3293 26 6 1.9962 -3.7513 7.2264 27 6 1.6089 -0.0691 2.4460 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 3.9397 0.1591 1.0755 35 1 3.7985 -1.3202 0.0962 36 1 5.1514 -1.7470 2.1203 37 1 3.6298 -2.6692 2.1814 38 1 4.0041 -1.6171 4.3607 39 1 4.2169 -0.0249 3.5912 40 1 3.0619 -2.1010 5.5583 41 1 0.3172 -2.8101 6.2585 42 1 2.0762 -1.2043 8.1679 43 1 0.6233 -0.5906 7.3417 44 1 -0.7752 -2.2525 8.4770 45 1 0.1706 -1.3625 9.6979 46 1 -1.5609 -2.2256 11.9423 47 1 0.2003 -4.7406 7.8974 48 1 1.6678 -5.1810 8.8084 49 1 2.1499 -4.4845 6.4347 50 1 2.9599 -3.4577 7.6425 51 1 0.5262 -0.0977 2.5693 52 1 1.9468 0.9670 2.4243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609341432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:14 Heat of formation + Delta-G solvation = -17.093594 kcal Electronic energy + Delta-G solvation = -29058.158794 eV Core-core repulsion = 25285.430245 eV Total energy + Delta-G solvation = -3772.728549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72578 -40.01741 -38.88223 -36.94661 -36.03140 -34.02671 -33.34794 -31.77347 -31.41651 -30.53633 -28.61532 -27.21050 -26.07757 -25.58393 -23.90732 -23.63994 -22.88105 -21.36850 -21.15113 -20.22298 -19.32016 -18.58531 -17.58554 -16.95410 -16.72062 -16.39430 -16.14745 -15.92144 -15.67431 -15.40637 -15.37446 -15.25536 -14.80562 -14.67174 -14.59668 -14.21914 -14.11678 -13.89583 -13.81815 -13.17336 -13.02720 -12.97944 -12.89983 -12.71344 -12.62487 -12.59444 -12.25075 -12.14459 -12.03017 -11.94418 -11.81297 -11.75414 -11.57093 -11.43336 -11.40080 -11.14185 -10.61094 -10.22345 -9.79906 -9.09457 -8.60026 -7.88355 -5.45654 1.46164 1.47291 1.55425 1.58651 2.09249 2.49797 2.81729 3.03812 3.28744 3.66439 3.72196 3.79557 3.86459 3.95784 4.03261 4.08163 4.19514 4.27638 4.32559 4.35263 4.46927 4.50420 4.55569 4.60579 4.66378 4.67523 4.75993 4.79651 4.82483 4.86787 4.92294 4.98596 5.02284 5.07324 5.08069 5.10873 5.14261 5.24988 5.31368 5.37620 5.40080 5.46031 5.58013 5.63067 5.66049 5.88622 6.01235 6.06295 6.42622 6.96145 7.14184 7.54351 7.81154 8.39562 9.18156 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.028536 B = 0.002462 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.966005 B =11368.153409 C =11774.288559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.538 5.538 3 C 0.012 3.988 4 C 0.077 3.923 5 H 0.069 0.931 6 C -0.105 4.105 7 C -0.127 4.127 8 C 0.103 3.897 9 N -0.623 5.623 10 C 0.699 3.301 11 O -0.639 6.639 12 N -0.724 5.724 13 C 0.181 3.819 14 C -0.129 4.129 15 C 0.190 3.810 16 N -0.608 5.608 17 C -0.266 4.266 18 H 0.071 0.929 19 C -0.048 4.048 20 N -0.937 5.937 21 Si 0.971 3.029 22 H -0.260 1.260 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.142 3.858 26 C -0.119 4.119 27 C 0.101 3.899 28 H 0.019 0.981 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.025 0.975 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.408 0.592 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.040 0.960 44 H -0.012 1.012 45 H 0.043 0.957 46 H 0.250 0.750 47 H 0.009 0.991 48 H 0.069 0.931 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.060 0.940 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.589 4.499 -24.450 28.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.261 5.261 3 C -0.135 4.135 4 C -0.033 4.033 5 H 0.088 0.912 6 C -0.143 4.143 7 C -0.165 4.165 8 C -0.019 4.019 9 N -0.361 5.361 10 C 0.400 3.600 11 O -0.521 6.521 12 N -0.381 5.381 13 C 0.076 3.924 14 C -0.170 4.170 15 C 0.063 3.937 16 N -0.332 5.332 17 C -0.396 4.396 18 H 0.088 0.912 19 C -0.244 4.244 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.184 1.184 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.017 3.983 26 C -0.159 4.159 27 C -0.024 4.024 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.248 0.752 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.006 0.994 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.027 0.973 48 H 0.088 0.912 49 H 0.109 0.891 50 H 0.095 0.905 51 H 0.079 0.921 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.793 4.483 -24.761 28.696 hybrid contribution -0.789 0.622 2.011 2.248 sum 13.004 5.106 -22.750 26.697 Atomic orbital electron populations 1.22457 0.87332 1.02460 1.00814 1.62386 1.08107 1.14976 1.40610 1.22587 1.01913 0.88128 1.00888 1.22064 0.97593 0.97065 0.86603 0.91246 1.21564 0.91863 1.01524 0.99324 1.21900 1.02907 0.98892 0.92817 1.21974 0.78183 1.02012 0.99754 1.47237 1.08697 1.60480 1.19659 1.16131 0.84523 0.78835 0.80483 1.90892 1.16806 1.64412 1.79978 1.45276 1.11700 1.55345 1.25763 1.20503 0.93896 0.92927 0.85085 1.22310 1.00373 0.97791 0.96495 1.20343 0.91792 0.87922 0.93642 1.44243 1.73363 1.12315 1.03239 1.19517 1.03496 1.33953 0.82648 0.91189 1.26154 0.94629 1.01070 1.02578 1.70185 1.08159 1.46119 1.33755 0.85167 0.78196 0.76935 0.79897 1.18352 1.21881 1.21861 1.21048 0.95987 0.91413 0.89897 1.22131 0.99439 0.95844 0.98463 1.22157 0.98174 0.96054 0.86060 0.96275 0.89797 0.91718 0.89637 0.90430 0.95633 0.90492 0.90030 0.87455 0.91966 0.89184 0.89736 0.75245 0.93052 0.91974 0.94099 0.99360 0.93867 0.94126 0.97301 0.91226 0.89089 0.90471 0.92115 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.31 127.69 1.19 1.48 16 2 N -0.54 -8.46 5.01 -922.83 -4.62 -13.08 16 3 C 0.01 0.15 8.83 127.69 1.13 1.28 16 4 C 0.08 1.28 2.38 44.99 0.11 1.39 16 5 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 6 C -0.11 -1.16 4.92 30.62 0.15 -1.01 16 7 C -0.13 -1.22 6.08 30.67 0.19 -1.03 16 8 C 0.10 1.35 6.43 86.36 0.56 1.91 16 9 N -0.62 -14.11 2.97 -836.91 -2.49 -16.60 16 10 C 0.70 22.21 8.26 179.05 1.48 23.69 16 11 O -0.64 -27.16 15.45 -4.00 -0.06 -27.23 16 12 N -0.72 -20.27 4.99 -457.68 -2.28 -22.55 16 13 C 0.18 6.42 2.38 45.02 0.11 6.53 16 14 C -0.13 -5.40 5.65 30.67 0.17 -5.23 16 15 C 0.19 9.83 5.23 86.36 0.45 10.28 16 16 N -0.61 -31.10 2.95 -699.08 -2.06 -33.16 16 17 C -0.27 -14.65 9.51 84.03 0.80 -13.85 16 18 H 0.07 3.68 7.85 -2.91 -0.02 3.66 16 19 C -0.05 -2.75 5.00 84.86 0.42 -2.32 16 20 N -0.94 -57.52 11.52 21.65 0.25 -57.27 16 21 Si 0.97 45.13 29.57 68.60 2.03 47.15 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.14 5.83 6.52 86.36 0.56 6.40 16 26 C -0.12 -3.72 5.55 30.67 0.17 -3.55 16 27 C 0.10 2.18 4.99 86.36 0.43 2.61 16 28 H 0.02 0.36 6.57 -2.39 -0.02 0.35 16 29 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 0.81 6.35 -2.39 -0.02 0.79 16 32 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 33 H 0.03 0.35 6.17 -2.39 -0.01 0.33 16 34 H 0.08 0.71 6.49 -2.39 -0.02 0.69 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.11 0.51 8.14 -2.39 -0.02 0.50 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 1.00 5.56 -2.39 -0.01 0.99 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.41 8.29 6.06 -92.71 -0.56 7.73 16 41 H 0.05 2.15 7.65 -2.39 -0.02 2.13 16 42 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.04 1.79 8.10 -2.39 -0.02 1.78 16 44 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 45 H 0.04 2.50 6.56 -2.39 -0.02 2.48 16 46 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 47 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 49 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.06 1.73 5.71 -2.39 -0.01 1.72 16 52 H 0.07 1.43 6.13 -2.38 -0.01 1.41 16 Total: -1.00 -74.85 386.07 -0.99 -75.84 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.34 Total: 18.32 kcal Atomic # 6 Polarization: 20.66 SS G_CDS: 7.91 Total: 28.57 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -11.20 Total: -142.66 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.06 Total: -27.23 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.85 -0.99 -75.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.744 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds