Wall clock time and date at job start Fri Apr 10 2020 18:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46849 * 111.00040 * 2 1 4 4 C 1.53032 * 109.51399 * 174.15481 * 3 2 1 5 5 C 1.53116 * 109.27791 * 59.18698 * 4 3 2 6 6 C 1.53118 * 109.15825 * 302.34182 * 5 4 3 7 7 H 1.09001 * 109.50800 * 297.67464 * 6 5 4 8 8 N 1.46908 * 109.50244 * 177.59502 * 6 5 4 9 9 C 1.46892 * 111.00063 * 299.30506 * 8 6 5 10 10 C 1.53239 * 109.33994 * 172.74549 * 9 8 6 11 11 N 1.47078 * 108.52224 * 53.82991 * 10 9 8 12 12 C 1.34771 * 120.88254 * 128.79252 * 11 10 9 13 13 O 1.21587 * 120.00121 * 175.02496 * 12 11 10 14 14 N 1.34778 * 120.00251 * 355.03175 * 12 11 10 15 15 C 1.46495 * 120.00427 * 185.08120 * 14 12 11 16 16 C 1.52995 * 109.47535 * 179.97438 * 15 14 12 17 17 C 1.50693 * 109.47444 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99948 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00426 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99625 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00329 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46989 * 90.00015 * 21 19 17 23 23 H 1.48500 * 109.46879 * 209.99985 * 21 19 17 24 24 H 1.48494 * 109.47065 * 329.99890 * 21 19 17 25 25 C 1.47080 * 118.23357 * 308.81737 * 11 10 9 26 26 C 1.46895 * 111.00021 * 175.00117 * 8 6 5 27 27 C 1.46848 * 110.98891 * 235.79698 * 2 1 3 28 28 H 1.09002 * 109.46781 * 56.04025 * 1 2 3 29 29 H 1.08994 * 109.46859 * 176.04392 * 1 2 3 30 30 H 1.09005 * 109.47223 * 296.04787 * 1 2 3 31 31 H 1.09001 * 109.46451 * 54.14140 * 3 2 1 32 32 H 1.09004 * 109.46413 * 294.17002 * 3 2 1 33 33 H 1.08998 * 109.50290 * 179.12654 * 4 3 2 34 34 H 1.08996 * 109.50179 * 299.24413 * 4 3 2 35 35 H 1.08997 * 109.52758 * 62.25289 * 5 4 3 36 36 H 1.09005 * 109.52153 * 182.44015 * 5 4 3 37 37 H 1.09002 * 109.49458 * 292.70360 * 9 8 6 38 38 H 1.09004 * 109.49532 * 52.78787 * 9 8 6 39 39 H 1.09007 * 109.62745 * 294.11806 * 10 9 8 40 40 H 1.09002 * 109.62799 * 173.54062 * 10 9 8 41 41 H 0.97005 * 119.99241 * 5.07959 * 14 12 11 42 42 H 1.09003 * 109.46921 * 300.00164 * 15 14 12 43 43 H 1.09004 * 109.47261 * 59.99575 * 15 14 12 44 44 H 1.09003 * 109.47300 * 300.00116 * 16 15 14 45 45 H 1.09004 * 109.47043 * 59.99625 * 16 15 14 46 46 H 0.96996 * 120.00134 * 179.97438 * 20 19 17 47 47 H 1.09006 * 109.62975 * 291.47152 * 25 11 10 48 48 H 1.09004 * 109.78427 * 170.99270 * 25 11 10 49 49 H 1.09007 * 109.49380 * 307.21670 * 26 8 6 50 50 H 1.09000 * 109.49621 * 67.26629 * 26 8 6 51 51 H 1.08996 * 109.47273 * 65.83613 * 27 2 1 52 52 H 1.08994 * 109.45411 * 305.85332 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3339 0.1469 5 6 4.1188 0.5368 -1.0142 6 6 3.5179 -0.8716 -1.0208 7 1 3.7816 -1.3841 -0.0957 8 7 4.0459 -1.6247 -2.1663 9 6 3.6929 -0.9713 -3.4337 10 6 4.4097 -1.6809 -4.5874 11 7 4.0969 -3.1164 -4.5195 12 6 3.6400 -3.7768 -5.6018 13 8 3.4724 -4.9801 -5.5539 14 7 3.3689 -3.1034 -6.7374 15 6 2.7680 -3.8008 -7.8770 16 6 2.5648 -2.8147 -9.0290 17 6 1.9473 -3.5323 -10.2014 18 1 1.7218 -4.5862 -10.1317 19 6 1.6691 -2.8432 -11.3629 20 7 1.9432 -1.5597 -11.4476 21 14 0.9029 -3.7325 -12.8159 22 1 -0.5769 -3.6633 -12.7143 23 1 1.3430 -3.0875 -14.0790 24 1 1.3336 -5.1536 -12.8096 25 6 4.2954 -3.8120 -3.2388 26 6 3.5831 -3.0186 -2.1384 27 6 1.9951 -0.7707 -1.1339 28 1 -0.3633 0.5741 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 -0.3634 0.4513 0.9233 31 1 1.5635 1.9258 0.8329 32 1 1.7326 1.8609 -0.9376 33 1 3.9100 2.3509 0.1313 34 1 3.7811 0.8564 1.0907 35 1 3.8889 1.0353 -1.9558 36 1 5.1998 0.4710 -0.8902 37 1 2.6149 -1.0292 -3.5849 38 1 4.0006 0.0739 -3.4022 39 1 5.4861 -1.5358 -4.4941 40 1 4.0638 -1.2753 -5.5381 41 1 3.5717 -2.1568 -6.8001 42 1 3.4283 -4.6059 -8.1995 43 1 1.8049 -4.2171 -7.5814 44 1 1.9044 -2.0099 -8.7063 45 1 3.5277 -2.3980 -9.3247 46 1 1.7479 -1.0749 -12.2647 47 1 5.3608 -3.8718 -3.0160 48 1 3.8763 -4.8166 -3.2958 49 1 3.8112 -3.4582 -1.1673 50 1 2.5066 -3.0479 -2.3070 51 1 1.7325 -0.2707 -2.0661 52 1 1.5631 -1.7713 -1.1243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612380465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:02 Heat of formation + Delta-G solvation = -36.361308 kcal Electronic energy + Delta-G solvation = -28549.832429 eV Core-core repulsion = 24776.268369 eV Total energy + Delta-G solvation = -3773.564060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64375 -40.58469 -38.52486 -36.67192 -35.83834 -34.85634 -33.85520 -32.35015 -31.47658 -30.62082 -27.85270 -27.59141 -26.43272 -24.95082 -24.11459 -23.37178 -22.92884 -22.17841 -20.83716 -20.10730 -19.08872 -18.51495 -17.34004 -17.14621 -16.82456 -16.50998 -16.42587 -16.12475 -16.03510 -15.60656 -15.46883 -15.31737 -15.15792 -14.93394 -14.68612 -14.29460 -14.23741 -13.92902 -13.64598 -13.31807 -13.27350 -13.06044 -12.94814 -12.77031 -12.65132 -12.53924 -12.46878 -12.26117 -12.24715 -12.07401 -11.68598 -11.60039 -11.48394 -11.42853 -11.27167 -11.14291 -10.61586 -10.22347 -9.67327 -9.43940 -9.17710 -8.25152 -6.35405 1.41008 1.41727 1.52864 1.62196 2.08855 2.39800 2.68514 2.95332 3.03633 3.09633 3.71848 3.76763 3.88813 3.95278 4.02947 4.12225 4.15042 4.18911 4.30295 4.35200 4.43327 4.46097 4.48715 4.49495 4.51633 4.56041 4.63487 4.71912 4.77704 4.82151 4.83761 4.86338 4.92505 4.93727 4.96025 5.03887 5.16494 5.28022 5.32184 5.41139 5.45233 5.51580 5.56842 5.75425 5.80502 5.94151 5.97323 6.05698 6.15564 6.17473 6.77300 6.94647 7.33811 7.52040 8.86871 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.002389 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.506451 B =11716.559762 C =12471.271965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.050 3.950 4 C -0.110 4.110 5 C -0.111 4.111 6 C 0.095 3.905 7 H 0.094 0.906 8 N -0.522 5.522 9 C 0.040 3.960 10 C 0.113 3.887 11 N -0.629 5.629 12 C 0.699 3.301 13 O -0.638 6.638 14 N -0.735 5.735 15 C 0.160 3.840 16 C 0.026 3.974 17 C -0.546 4.546 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.267 1.267 25 C 0.134 3.866 26 C 0.049 3.951 27 C 0.028 3.972 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.403 0.597 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.008 0.992 45 H 0.008 0.992 46 H 0.266 0.734 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.108 0.892 50 H 0.026 0.974 51 H 0.023 0.977 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 8.733 27.172 28.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.270 5.270 3 C -0.077 4.077 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.014 4.014 7 H 0.112 0.888 8 N -0.246 5.246 9 C -0.088 4.088 10 C -0.009 4.009 11 N -0.367 5.367 12 C 0.401 3.599 13 O -0.520 6.520 14 N -0.392 5.392 15 C 0.036 3.964 16 C -0.012 4.012 17 C -0.585 4.585 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.191 1.191 25 C 0.012 3.988 26 C -0.080 4.080 27 C -0.102 4.102 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.044 0.956 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.241 0.759 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.027 0.973 46 H 0.075 0.925 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.126 0.874 50 H 0.044 0.956 51 H 0.041 0.959 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.563 7.777 27.538 28.977 hybrid contribution -1.767 0.392 -1.971 2.676 sum 2.796 8.170 25.567 26.986 Atomic orbital electron populations 1.22399 0.86860 1.01934 1.01285 1.61962 1.08088 1.14504 1.42483 1.22219 0.96604 0.88335 1.00570 1.21549 0.93322 1.01053 0.98939 1.21668 1.01153 0.93277 0.98814 1.21767 0.90293 0.95543 0.93766 0.88779 1.62271 1.58579 1.01658 1.02066 1.22551 0.97435 0.99725 0.89132 1.21918 1.01609 0.78604 0.98816 1.47384 1.69034 1.10645 1.09627 1.16086 0.78077 0.84751 0.80989 1.90840 1.62457 1.14334 1.84357 1.45405 1.66886 1.13510 1.13367 1.21082 0.95637 0.95172 0.84507 1.19106 0.96160 0.94141 0.91745 1.21450 1.41639 0.96336 0.99066 0.92337 1.25867 0.95956 0.95673 1.01618 1.70054 1.48679 1.09131 1.28692 0.85440 0.78720 0.78803 0.78070 1.19750 1.20413 1.19111 1.21607 1.01419 0.95732 0.80087 1.22464 0.96692 0.89061 0.99797 1.22764 0.97872 0.97882 0.91653 0.96129 0.91696 0.89957 0.89734 0.95586 0.89649 0.90843 0.92108 0.90070 0.95558 0.87321 0.88932 0.89856 0.75888 0.93866 0.93973 0.97403 0.97317 0.92507 0.89744 0.90462 0.87380 0.95600 0.95871 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.62 127.69 1.23 1.56 16 2 N -0.55 -8.38 4.91 -922.58 -4.53 -12.91 16 3 C 0.05 0.63 5.46 86.32 0.47 1.10 16 4 C -0.11 -1.11 6.09 30.64 0.19 -0.93 16 5 C -0.11 -1.30 5.15 30.67 0.16 -1.14 16 6 C 0.09 1.36 2.39 44.97 0.11 1.47 16 7 H 0.09 1.38 8.06 -2.39 -0.02 1.36 16 8 N -0.52 -8.51 4.62 -869.71 -4.01 -12.53 16 9 C 0.04 0.70 4.76 86.38 0.41 1.11 16 10 C 0.11 2.31 6.59 86.35 0.57 2.88 16 11 N -0.63 -17.22 3.01 -835.93 -2.52 -19.73 16 12 C 0.70 25.94 8.31 179.06 1.49 27.43 16 13 O -0.64 -28.80 15.83 -3.99 -0.06 -28.86 16 14 N -0.73 -27.44 5.47 -478.55 -2.62 -30.06 16 15 C 0.16 7.21 5.62 86.38 0.49 7.70 16 16 C 0.03 1.33 5.09 29.84 0.15 1.49 16 17 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 19 C 0.01 0.43 5.46 84.66 0.46 0.89 16 20 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 21 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 C 0.13 3.10 6.58 86.35 0.57 3.66 16 26 C 0.05 0.88 5.14 86.38 0.44 1.33 16 27 C 0.03 0.47 4.06 86.33 0.35 0.82 16 28 H 0.02 0.30 8.14 -2.39 -0.02 0.29 16 29 H 0.06 0.94 8.02 -2.39 -0.02 0.92 16 30 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 32 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.75 6.16 -2.39 -0.01 0.73 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.88 16 37 H 0.03 0.55 6.69 -2.39 -0.02 0.54 16 38 H 0.11 1.52 5.93 -2.38 -0.01 1.51 16 39 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.08 1.70 5.63 -2.39 -0.01 1.69 16 41 H 0.40 13.02 5.97 -92.70 -0.55 12.47 16 42 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 48 H 0.08 2.09 7.11 -2.38 -0.02 2.07 16 49 H 0.11 1.54 8.05 -2.38 -0.02 1.52 16 50 H 0.03 0.55 6.84 -2.39 -0.02 0.54 16 51 H 0.02 0.45 6.51 -2.39 -0.02 0.43 16 52 H 0.06 1.18 6.63 -2.39 -0.02 1.17 16 Total: -1.00 -68.93 390.90 -3.77 -72.70 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.34 Total: 20.88 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 7.32 Total: 18.70 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -13.39 Total: -129.33 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.06 Total: -28.86 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -68.93 -3.77 -72.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.343 kcal (2) G-P(sol) polarization free energy of solvation -68.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds