Wall clock time and date at job start Fri Apr 10 2020 18:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46493 * 119.99878 * 2 1 4 4 C 1.53004 * 109.47208 * 269.99732 * 3 2 1 5 5 N 1.46898 * 109.47068 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99869 * 66.05151 * 5 4 3 7 7 C 1.46906 * 110.99909 * 189.99957 * 5 4 3 8 8 C 1.53003 * 117.50036 * 243.74977 * 7 5 4 9 9 C 1.53000 * 117.49638 * 175.09001 * 7 5 4 10 10 C 1.34776 * 120.00087 * 179.97438 * 2 1 3 11 11 O 1.21582 * 119.99936 * 179.97438 * 10 2 1 12 12 N 1.34778 * 119.99808 * 0.02562 * 10 2 1 13 13 C 1.46504 * 120.00011 * 180.02562 * 12 10 2 14 14 C 1.53352 * 109.41782 * 275.12821 * 13 12 10 15 15 C 1.53190 * 109.15070 * 178.67570 * 14 13 12 16 16 N 1.46925 * 108.89356 * 54.57285 * 15 14 13 17 17 C 1.36935 * 120.62758 * 126.30089 * 16 15 14 18 18 H 1.08001 * 120.00088 * 332.62829 * 17 16 15 19 19 C 1.38817 * 119.99782 * 152.62208 * 17 16 15 20 20 N 1.31618 * 119.99923 * 159.36242 * 19 17 16 21 21 Si 1.86801 * 120.00195 * 339.36341 * 19 17 16 22 22 H 1.48501 * 109.47054 * 92.89675 * 21 19 17 23 23 H 1.48497 * 109.47324 * 212.90179 * 21 19 17 24 24 H 1.48501 * 109.46722 * 332.89954 * 21 19 17 25 25 C 1.46926 * 118.73822 * 306.31916 * 16 15 14 26 26 C 1.53037 * 109.46184 * 154.99596 * 13 12 10 27 27 H 1.09002 * 109.47356 * 269.99815 * 1 2 3 28 28 H 1.09001 * 109.47744 * 30.00025 * 1 2 3 29 29 H 1.09005 * 109.47269 * 150.00122 * 1 2 3 30 30 H 1.09000 * 109.47729 * 29.99883 * 3 2 1 31 31 H 1.09005 * 109.47301 * 150.00165 * 3 2 1 32 32 H 1.08997 * 109.47304 * 300.00364 * 4 3 2 33 33 H 1.09006 * 109.46966 * 60.00458 * 4 3 2 34 34 H 1.09006 * 109.47163 * 59.99718 * 6 5 4 35 35 H 1.09003 * 109.47364 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47069 * 299.99587 * 6 5 4 37 37 H 1.09000 * 115.54728 * 29.42078 * 7 5 4 38 38 H 1.08998 * 117.49504 * 0.02562 * 8 7 5 39 39 H 1.08997 * 117.49615 * 145.02354 * 8 7 5 40 40 H 1.09005 * 117.49460 * 214.98092 * 9 7 5 41 41 H 1.08994 * 117.50044 * 359.97438 * 9 7 5 42 42 H 0.97003 * 120.00299 * 359.97438 * 12 10 2 43 43 H 1.09008 * 109.45773 * 35.02385 * 13 12 10 44 44 H 1.09004 * 109.68561 * 58.70322 * 14 13 12 45 45 H 1.09004 * 109.47287 * 298.50983 * 14 13 12 46 46 H 1.09004 * 109.58215 * 294.71811 * 15 14 13 47 47 H 1.08997 * 109.58828 * 174.43980 * 15 14 13 48 48 H 0.96999 * 119.99917 * 180.02562 * 20 19 17 49 49 H 1.09002 * 109.58248 * 173.39705 * 25 16 15 50 50 H 1.08994 * 109.58922 * 293.68210 * 25 16 15 51 51 H 1.09003 * 109.49698 * 61.43756 * 26 13 12 52 52 H 1.08994 * 109.52761 * 301.35170 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1864 2.9829 -1.4425 6 6 4.5350 2.8127 -0.8855 7 6 3.2434 3.5578 -2.7932 8 6 4.6215 3.7021 -3.4420 9 6 3.8752 4.9429 -2.9453 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1672 0.0001 12 7 1.4649 -2.3344 0.0005 13 6 2.1974 -3.6032 0.0017 14 6 2.5654 -3.9807 -1.4384 15 6 3.3594 -5.2907 -1.4272 16 7 2.5814 -6.3126 -0.7137 17 6 2.3088 -7.5188 -1.3019 18 1 2.2516 -7.5943 -2.3778 19 6 2.1062 -8.6445 -0.5153 20 7 1.4618 -9.6823 -1.0052 21 14 2.7482 -8.6864 1.2384 22 1 1.6836 -8.2272 2.1663 23 1 3.1444 -10.0743 1.5875 24 1 3.9270 -7.7909 1.3555 25 6 2.1010 -6.0155 0.6426 26 6 1.3194 -4.6983 0.6114 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 3.0415 0.9507 -1.9564 33 1 1.5000 1.8407 -1.9564 34 1 5.0878 2.0904 -1.4863 35 1 5.0566 3.7697 -0.8977 36 1 4.4616 2.4516 0.1403 37 1 2.4038 3.3133 -3.4439 38 1 5.4857 3.3701 -2.8668 39 1 4.6884 3.5531 -4.5197 40 1 3.4515 5.6096 -3.6964 41 1 4.2481 5.4277 -2.0432 42 1 0.4949 -2.3344 0.0005 43 1 3.1075 -3.4965 0.5922 44 1 3.1724 -3.1910 -1.8813 45 1 1.6552 -4.1120 -2.0235 46 1 4.3118 -5.1363 -0.9199 47 1 3.5397 -5.6175 -2.4513 48 1 1.3199 -10.4687 -0.4554 49 1 1.4486 -6.8195 0.9834 50 1 2.9505 -5.9227 1.3191 51 1 0.4208 -4.8227 0.0070 52 1 1.0391 -4.4175 1.6265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613787958.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:10 Heat of formation + Delta-G solvation = 43.581867 kcal Electronic energy + Delta-G solvation = -28451.828768 eV Core-core repulsion = 24681.731304 eV Total energy + Delta-G solvation = -3770.097464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.36575 -39.17305 -37.87416 -35.95450 -34.67573 -34.09509 -32.11239 -30.45802 -30.21692 -29.01602 -27.27987 -26.31155 -24.77694 -23.05791 -22.78588 -22.51507 -21.62080 -20.35892 -19.91576 -19.54844 -18.13434 -17.19361 -16.79850 -16.29577 -15.98634 -15.47380 -15.29020 -14.87936 -14.59280 -14.15166 -14.08725 -13.80401 -13.63821 -13.55186 -13.24659 -13.02379 -12.88484 -12.76052 -12.59103 -12.38719 -12.23706 -12.03954 -11.95750 -11.76497 -11.73318 -11.11196 -11.05774 -10.93667 -10.81352 -10.71783 -10.53706 -10.26714 -10.18398 -10.00252 -9.74881 -9.46168 -8.99559 -8.63353 -8.60819 -8.48578 -6.98688 -5.94919 -3.30548 2.52896 3.21949 3.31307 3.35675 3.49259 3.52929 3.71630 3.97117 4.44717 4.52999 4.57021 4.65485 4.73735 4.82102 4.85948 4.96529 4.99650 5.15758 5.20353 5.22370 5.30890 5.33107 5.34605 5.39785 5.42465 5.44388 5.52442 5.59027 5.68181 5.69763 5.76774 5.81103 5.84157 6.05338 6.12730 6.15781 6.24308 6.36951 6.43674 6.58715 6.65713 6.66592 6.66756 6.71232 6.78552 6.86634 7.00650 7.96188 7.97278 8.33029 8.64561 8.94127 9.72056 10.09997 11.21046 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.002363 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.927976 B =11846.602352 C =12265.564096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.637 5.637 3 C 0.138 3.862 4 C 0.041 3.959 5 N -0.507 5.507 6 C 0.016 3.984 7 C 0.021 3.979 8 C -0.219 4.219 9 C -0.170 4.170 10 C 0.704 3.296 11 O -0.588 6.588 12 N -0.739 5.739 13 C 0.168 3.832 14 C -0.140 4.140 15 C 0.151 3.849 16 N -0.606 5.606 17 C -0.258 4.258 18 H 0.086 0.914 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.882 3.118 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.130 3.870 26 C -0.140 4.140 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.392 0.608 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.025 0.975 47 H 0.065 0.935 48 H 0.262 0.738 49 H 0.077 0.923 50 H 0.028 0.972 51 H 0.069 0.931 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 28.077 0.353 28.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.375 5.375 3 C 0.014 3.986 4 C -0.088 4.088 5 N -0.230 5.230 6 C -0.132 4.132 7 C -0.089 4.089 8 C -0.258 4.258 9 C -0.208 4.208 10 C 0.405 3.595 11 O -0.466 6.466 12 N -0.393 5.393 13 C 0.064 3.936 14 C -0.181 4.181 15 C 0.024 3.976 16 N -0.330 5.330 17 C -0.386 4.386 18 H 0.103 0.897 19 C -0.177 4.177 20 N -0.552 5.552 21 Si 0.712 3.288 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.195 1.195 25 C 0.003 3.997 26 C -0.180 4.180 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.134 0.866 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.227 0.773 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.046 0.954 51 H 0.088 0.912 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.796 28.176 0.689 28.196 hybrid contribution 0.126 -0.640 0.398 0.764 sum -0.670 27.537 1.087 27.566 Atomic orbital electron populations 1.21720 0.79883 1.03007 1.01768 1.46994 1.06303 1.05018 1.79220 1.21210 0.98022 0.83442 0.95895 1.22530 0.98433 0.89684 0.98176 1.61832 1.16670 1.25377 1.19077 1.22571 0.89159 1.01063 1.00409 1.22655 0.96210 0.99513 0.90473 1.23577 0.97272 1.03631 1.01350 1.23062 1.03849 0.90916 1.02984 1.15942 0.85418 0.80381 0.77739 1.90908 1.11521 1.86169 1.57982 1.45618 1.09671 1.04909 1.79138 1.20921 0.95142 0.80221 0.97360 1.22441 1.01025 0.98760 0.95843 1.20893 0.92325 0.87354 0.97009 1.44405 1.60255 1.14488 1.13859 1.18929 1.43066 0.83543 0.93103 0.89659 1.25291 0.99176 0.95398 0.97829 1.69836 1.41369 1.06547 1.37417 0.86969 0.79963 0.75962 0.85900 1.21640 1.23123 1.19472 1.21303 0.96058 0.94516 0.87792 1.22341 0.99593 0.96225 0.99802 0.92596 0.90842 0.91413 0.89957 0.89696 0.93753 0.90797 0.94577 0.91357 0.90736 0.86571 0.88108 0.88820 0.88530 0.88554 0.77256 0.89987 0.92301 0.92032 0.95703 0.91678 0.92788 0.90531 0.95443 0.91227 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.20 59.84 0.61 1.17 16 2 N -0.64 -6.80 2.87 -187.35 -0.54 -7.34 16 3 C 0.14 1.35 5.33 -4.04 -0.02 1.33 16 4 C 0.04 0.39 5.26 -3.82 -0.02 0.37 16 5 N -0.51 -4.54 4.97 -234.87 -1.17 -5.71 16 6 C 0.02 0.14 7.96 60.07 0.48 0.62 16 7 C 0.02 0.17 6.11 -67.71 -0.41 -0.24 16 8 C -0.22 -1.66 9.51 -26.69 -0.25 -1.91 16 9 C -0.17 -1.17 9.99 -26.69 -0.27 -1.44 16 10 C 0.70 10.21 8.24 -86.92 -0.72 9.50 16 11 O -0.59 -10.81 15.58 5.29 0.08 -10.73 16 12 N -0.74 -10.05 4.94 -58.47 -0.29 -10.33 16 13 C 0.17 2.77 2.42 -67.73 -0.16 2.61 16 14 C -0.14 -2.46 5.68 -26.45 -0.15 -2.62 16 15 C 0.15 3.08 6.50 -3.71 -0.02 3.05 16 16 N -0.61 -14.43 2.77 -172.32 -0.48 -14.91 16 17 C -0.26 -7.20 10.03 -15.06 -0.15 -7.35 16 18 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 19 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 20 N -0.91 -27.76 13.97 55.49 0.78 -26.98 16 21 Si 0.88 22.35 24.34 -169.99 -4.14 18.21 16 22 H -0.29 -6.99 6.62 56.52 0.37 -6.61 16 23 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 24 H -0.27 -6.78 6.64 56.52 0.38 -6.40 16 25 C 0.13 2.80 4.21 -3.71 -0.02 2.78 16 26 C -0.14 -2.38 5.55 -26.61 -0.15 -2.53 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 29 H 0.07 0.45 6.36 -51.93 -0.33 0.12 16 30 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 31 H 0.08 0.99 5.83 -51.93 -0.30 0.69 16 32 H 0.04 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.07 0.64 7.96 -51.93 -0.41 0.22 16 34 H 0.04 0.35 7.23 -51.93 -0.38 -0.02 16 35 H 0.07 0.52 6.63 -51.93 -0.34 0.17 16 36 H 0.07 0.66 6.47 -51.93 -0.34 0.33 16 37 H 0.12 0.87 7.93 -51.93 -0.41 0.46 16 38 H 0.10 0.80 5.89 -51.93 -0.31 0.49 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.67 7.56 -51.93 -0.39 0.27 16 42 H 0.39 4.30 6.33 -40.82 -0.26 4.04 16 43 H 0.08 1.52 7.58 -51.92 -0.39 1.12 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.08 1.79 4.50 -51.93 -0.23 1.56 16 50 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 51 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 52 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 393.08 15.07 5.92 5.92 Total: -1.00 -32.97 393.08 -10.31 -43.28 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -9.13 Total: 2.71 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.35 Total: 5.88 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -1.70 Total: -65.27 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.97 -10.31 -43.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613787958.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.860 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds