Wall clock time and date at job start Fri Apr 10 2020 18:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46493 * 119.99878 * 2 1 4 4 C 1.53004 * 109.47208 * 269.99732 * 3 2 1 5 5 N 1.46898 * 109.47068 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99869 * 66.05151 * 5 4 3 7 7 C 1.46906 * 110.99909 * 189.99957 * 5 4 3 8 8 C 1.53003 * 117.50036 * 243.74977 * 7 5 4 9 9 C 1.53000 * 117.49638 * 175.09001 * 7 5 4 10 10 C 1.34776 * 120.00087 * 179.97438 * 2 1 3 11 11 O 1.21582 * 119.99936 * 179.97438 * 10 2 1 12 12 N 1.34778 * 119.99808 * 0.02562 * 10 2 1 13 13 C 1.46504 * 120.00011 * 180.02562 * 12 10 2 14 14 C 1.53352 * 109.41782 * 275.12821 * 13 12 10 15 15 C 1.53190 * 109.15070 * 178.67570 * 14 13 12 16 16 N 1.46925 * 108.89356 * 54.57285 * 15 14 13 17 17 C 1.36935 * 120.62758 * 126.30089 * 16 15 14 18 18 H 1.08001 * 120.00088 * 332.62829 * 17 16 15 19 19 C 1.38817 * 119.99782 * 152.62208 * 17 16 15 20 20 N 1.31618 * 119.99923 * 159.36242 * 19 17 16 21 21 Si 1.86801 * 120.00195 * 339.36341 * 19 17 16 22 22 H 1.48501 * 109.47054 * 92.89675 * 21 19 17 23 23 H 1.48497 * 109.47324 * 212.90179 * 21 19 17 24 24 H 1.48501 * 109.46722 * 332.89954 * 21 19 17 25 25 C 1.46926 * 118.73822 * 306.31916 * 16 15 14 26 26 C 1.53037 * 109.46184 * 154.99596 * 13 12 10 27 27 H 1.09002 * 109.47356 * 269.99815 * 1 2 3 28 28 H 1.09001 * 109.47744 * 30.00025 * 1 2 3 29 29 H 1.09005 * 109.47269 * 150.00122 * 1 2 3 30 30 H 1.09000 * 109.47729 * 29.99883 * 3 2 1 31 31 H 1.09005 * 109.47301 * 150.00165 * 3 2 1 32 32 H 1.08997 * 109.47304 * 300.00364 * 4 3 2 33 33 H 1.09006 * 109.46966 * 60.00458 * 4 3 2 34 34 H 1.09006 * 109.47163 * 59.99718 * 6 5 4 35 35 H 1.09003 * 109.47364 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47069 * 299.99587 * 6 5 4 37 37 H 1.09000 * 115.54728 * 29.42078 * 7 5 4 38 38 H 1.08998 * 117.49504 * 0.02562 * 8 7 5 39 39 H 1.08997 * 117.49615 * 145.02354 * 8 7 5 40 40 H 1.09005 * 117.49460 * 214.98092 * 9 7 5 41 41 H 1.08994 * 117.50044 * 359.97438 * 9 7 5 42 42 H 0.97003 * 120.00299 * 359.97438 * 12 10 2 43 43 H 1.09008 * 109.45773 * 35.02385 * 13 12 10 44 44 H 1.09004 * 109.68561 * 58.70322 * 14 13 12 45 45 H 1.09004 * 109.47287 * 298.50983 * 14 13 12 46 46 H 1.09004 * 109.58215 * 294.71811 * 15 14 13 47 47 H 1.08997 * 109.58828 * 174.43980 * 15 14 13 48 48 H 0.96999 * 119.99917 * 180.02562 * 20 19 17 49 49 H 1.09002 * 109.58248 * 173.39705 * 25 16 15 50 50 H 1.08994 * 109.58922 * 293.68210 * 25 16 15 51 51 H 1.09003 * 109.49698 * 61.43756 * 26 13 12 52 52 H 1.08994 * 109.52761 * 301.35170 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1864 2.9829 -1.4425 6 6 4.5350 2.8127 -0.8855 7 6 3.2434 3.5578 -2.7932 8 6 4.6215 3.7021 -3.4420 9 6 3.8752 4.9429 -2.9453 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1672 0.0001 12 7 1.4649 -2.3344 0.0005 13 6 2.1974 -3.6032 0.0017 14 6 2.5654 -3.9807 -1.4384 15 6 3.3594 -5.2907 -1.4272 16 7 2.5814 -6.3126 -0.7137 17 6 2.3088 -7.5188 -1.3019 18 1 2.2516 -7.5943 -2.3778 19 6 2.1062 -8.6445 -0.5153 20 7 1.4618 -9.6823 -1.0052 21 14 2.7482 -8.6864 1.2384 22 1 1.6836 -8.2272 2.1663 23 1 3.1444 -10.0743 1.5875 24 1 3.9270 -7.7909 1.3555 25 6 2.1010 -6.0155 0.6426 26 6 1.3194 -4.6983 0.6114 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 3.0415 0.9507 -1.9564 33 1 1.5000 1.8407 -1.9564 34 1 5.0878 2.0904 -1.4863 35 1 5.0566 3.7697 -0.8977 36 1 4.4616 2.4516 0.1403 37 1 2.4038 3.3133 -3.4439 38 1 5.4857 3.3701 -2.8668 39 1 4.6884 3.5531 -4.5197 40 1 3.4515 5.6096 -3.6964 41 1 4.2481 5.4277 -2.0432 42 1 0.4949 -2.3344 0.0005 43 1 3.1075 -3.4965 0.5922 44 1 3.1724 -3.1910 -1.8813 45 1 1.6552 -4.1120 -2.0235 46 1 4.3118 -5.1363 -0.9199 47 1 3.5397 -5.6175 -2.4513 48 1 1.3199 -10.4687 -0.4554 49 1 1.4486 -6.8195 0.9834 50 1 2.9505 -5.9227 1.3191 51 1 0.4208 -4.8227 0.0070 52 1 1.0391 -4.4175 1.6265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613787958.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:09 Heat of formation + Delta-G solvation = 20.737247 kcal Electronic energy + Delta-G solvation = -28452.819385 eV Core-core repulsion = 24681.731304 eV Total energy + Delta-G solvation = -3771.088081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.44412 -39.92123 -39.32229 -36.94789 -36.07493 -34.96573 -33.95696 -32.00780 -31.79935 -29.89949 -27.96867 -27.33243 -26.36299 -24.56494 -23.86057 -23.31891 -22.93358 -21.26387 -21.02175 -20.82723 -19.27899 -18.58182 -17.98334 -17.53219 -16.96189 -16.78504 -16.28811 -15.96375 -15.75856 -15.73565 -15.37442 -15.18953 -14.79029 -14.59688 -14.33171 -14.32305 -14.03466 -13.96215 -13.75270 -13.47336 -13.41614 -13.27503 -12.93423 -12.69954 -12.59522 -12.51444 -12.33657 -12.28522 -12.03719 -11.82000 -11.78562 -11.72253 -11.56965 -11.38966 -11.31450 -11.20715 -10.71581 -10.15909 -9.54378 -9.21373 -8.97710 -8.16365 -5.48863 1.29380 1.42975 1.51601 1.58513 2.13107 2.41344 2.63947 2.96801 3.05251 3.16710 3.32595 3.76428 3.79385 3.94132 3.97584 4.04562 4.08383 4.14657 4.21984 4.27620 4.30825 4.33703 4.46269 4.47427 4.54785 4.61354 4.65917 4.68912 4.74370 4.76692 4.85766 4.87225 4.88815 4.91282 4.92669 4.99148 5.01820 5.05726 5.10800 5.14896 5.22355 5.37658 5.50010 5.56539 5.86246 5.92313 5.95375 6.03356 6.12479 6.89915 6.97688 7.56813 7.60615 8.01406 9.03312 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.002363 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.927976 B =11846.602352 C =12265.564096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.630 5.630 3 C 0.140 3.860 4 C 0.051 3.949 5 N -0.506 5.506 6 C 0.019 3.981 7 C 0.006 3.994 8 C -0.226 4.226 9 C -0.157 4.157 10 C 0.698 3.302 11 O -0.633 6.633 12 N -0.727 5.727 13 C 0.179 3.821 14 C -0.126 4.126 15 C 0.148 3.852 16 N -0.619 5.619 17 C -0.248 4.248 18 H 0.053 0.947 19 C -0.034 4.034 20 N -0.955 5.955 21 Si 0.944 3.056 22 H -0.267 1.267 23 H -0.311 1.311 24 H -0.267 1.267 25 C 0.122 3.878 26 C -0.126 4.126 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.011 0.989 33 H 0.088 0.912 34 H 0.019 0.981 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.408 0.592 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.057 0.943 48 H 0.262 0.738 49 H 0.060 0.940 50 H 0.031 0.969 51 H 0.073 0.927 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 30.988 1.636 31.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.367 5.367 3 C 0.017 3.983 4 C -0.078 4.078 5 N -0.228 5.228 6 C -0.129 4.129 7 C -0.103 4.103 8 C -0.265 4.265 9 C -0.195 4.195 10 C 0.400 3.600 11 O -0.514 6.514 12 N -0.383 5.383 13 C 0.073 3.927 14 C -0.166 4.166 15 C 0.022 3.978 16 N -0.343 5.343 17 C -0.378 4.378 18 H 0.071 0.929 19 C -0.228 4.228 20 N -0.601 5.601 21 Si 0.773 3.227 22 H -0.194 1.194 23 H -0.240 1.240 24 H -0.191 1.191 25 C -0.004 4.004 26 C -0.165 4.165 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.107 0.893 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.246 0.754 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.049 0.951 51 H 0.092 0.908 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.164 31.169 1.984 31.307 hybrid contribution 0.549 -1.445 -0.101 1.549 sum -1.615 29.724 1.883 29.827 Atomic orbital electron populations 1.22008 0.77174 1.04497 1.03257 1.47040 1.07919 1.03930 1.77785 1.21256 0.97548 0.83537 0.95984 1.22416 0.98551 0.89096 0.97786 1.61887 1.16449 1.24690 1.19764 1.22541 0.89248 1.01216 0.99886 1.22814 0.96716 1.00609 0.90210 1.23594 0.96830 1.04460 1.01566 1.23119 1.02696 0.90449 1.03205 1.16127 0.84976 0.81350 0.77572 1.90883 1.13679 1.86915 1.59899 1.45261 1.10283 1.03734 1.79053 1.20568 0.94789 0.81395 0.95938 1.22246 1.00476 0.96914 0.96973 1.20989 0.92621 0.87891 0.96303 1.44506 1.61202 1.13759 1.14865 1.18850 1.41564 0.85392 0.91973 0.92950 1.25889 0.99794 0.95165 1.01997 1.69957 1.43427 1.07449 1.39251 0.85952 0.79753 0.75345 0.81651 1.19361 1.24007 1.19130 1.21377 0.96348 0.96359 0.86299 1.22145 0.98781 0.93748 1.01843 0.91046 0.88576 0.90809 0.87367 0.91920 0.97060 0.89328 0.96252 0.90120 0.91047 0.85888 0.88831 0.88337 0.87022 0.88486 0.75354 0.91683 0.92188 0.91958 0.95459 0.92403 0.92891 0.92228 0.95085 0.90793 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 10.20 127.77 1.30 2.04 16 2 N -0.63 -11.97 2.87 -864.92 -2.48 -14.46 16 3 C 0.14 2.51 5.33 86.38 0.46 2.97 16 4 C 0.05 0.91 5.26 86.31 0.45 1.37 16 5 N -0.51 -8.44 4.97 -897.00 -4.46 -12.90 16 6 C 0.02 0.33 7.96 127.69 1.02 1.34 16 7 C 0.01 0.08 6.11 44.92 0.27 0.36 16 8 C -0.23 -3.21 9.51 30.62 0.29 -2.91 16 9 C -0.16 -1.86 9.99 30.62 0.31 -1.55 16 10 C 0.70 19.17 8.24 179.05 1.48 20.65 16 11 O -0.63 -23.11 15.58 -3.97 -0.06 -23.17 16 12 N -0.73 -18.03 4.94 -457.17 -2.26 -20.29 16 13 C 0.18 5.57 2.42 45.12 0.11 5.68 16 14 C -0.13 -4.30 5.68 30.78 0.17 -4.13 16 15 C 0.15 6.02 6.50 86.36 0.56 6.58 16 16 N -0.62 -29.30 2.77 -699.10 -1.94 -31.24 16 17 C -0.25 -14.11 10.03 84.03 0.84 -13.27 16 18 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 19 C -0.03 -1.96 5.23 84.86 0.44 -1.52 16 20 N -0.95 -59.72 13.97 21.65 0.30 -59.42 16 21 Si 0.94 46.40 24.34 68.60 1.67 48.07 16 22 H -0.27 -12.11 6.62 99.48 0.66 -11.45 16 23 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 24 H -0.27 -12.81 6.64 99.48 0.66 -12.15 16 25 C 0.12 5.04 4.21 86.36 0.36 5.41 16 26 C -0.13 -3.94 5.55 30.67 0.17 -3.77 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.60 8.07 -2.39 -0.02 0.58 16 29 H 0.07 0.69 6.36 -2.38 -0.02 0.67 16 30 H 0.11 1.40 8.07 -2.39 -0.02 1.38 16 31 H 0.06 1.43 5.83 -2.38 -0.01 1.42 16 32 H 0.01 0.27 8.12 -2.39 -0.02 0.25 16 33 H 0.09 1.32 7.96 -2.38 -0.02 1.30 16 34 H 0.02 0.39 7.23 -2.38 -0.02 0.37 16 35 H 0.08 1.16 6.63 -2.39 -0.02 1.15 16 36 H 0.07 1.27 6.47 -2.39 -0.02 1.25 16 37 H 0.12 1.62 7.93 -2.39 -0.02 1.60 16 38 H 0.09 1.46 5.89 -2.39 -0.01 1.44 16 39 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.10 1.15 7.56 -2.39 -0.02 1.13 16 42 H 0.41 7.55 6.33 -92.71 -0.59 6.97 16 43 H 0.06 2.31 7.58 -2.38 -0.02 2.29 16 44 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 48 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 49 H 0.06 2.68 4.50 -2.39 -0.01 2.67 16 50 H 0.03 1.28 7.07 -2.39 -0.02 1.26 16 51 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -73.17 393.08 -0.76 -73.94 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.22 Total: 20.23 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 8.25 Total: 19.24 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -10.84 Total: -138.31 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.17 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.67 Total: 48.07 kcal Total: -73.17 -0.76 -73.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613787958.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.673 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds