Wall clock time and date at job start Fri Apr 10 2020 18:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.66460 * 2 1 4 4 C 1.50079 * 109.41007 * 120.15213 * 2 1 3 5 5 O 1.21284 * 118.49937 * 287.25958 * 4 2 1 6 6 N 1.33383 * 123.00692 * 107.43875 * 4 2 1 7 7 C 1.46494 * 117.69962 * 184.14308 * 6 4 2 8 8 C 1.45642 * 124.58748 * 4.16270 * 6 4 2 9 9 C 1.52988 * 110.77534 * 338.07959 * 8 6 4 10 10 N 1.47048 * 109.56940 * 239.70592 * 2 1 3 11 11 C 1.34772 * 121.35769 * 102.93859 * 10 2 1 12 12 O 1.21585 * 120.00423 * 174.56480 * 11 10 2 13 13 N 1.34784 * 119.99847 * 354.56053 * 11 10 2 14 14 C 1.46493 * 120.00397 * 184.95017 * 13 11 10 15 15 C 1.53040 * 109.46423 * 205.00125 * 14 13 11 16 16 C 1.53191 * 109.31347 * 178.62815 * 15 14 13 17 17 N 1.46921 * 108.77705 * 54.63371 * 16 15 14 18 18 C 1.36930 * 120.63173 * 126.36962 * 17 16 15 19 19 H 1.07999 * 120.00513 * 211.39779 * 18 17 16 20 20 C 1.38819 * 120.00051 * 31.66695 * 18 17 16 21 21 N 1.31620 * 119.99632 * 9.64698 * 20 18 17 22 22 Si 1.86801 * 120.00025 * 189.64734 * 20 18 17 23 23 H 1.48498 * 109.47381 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46900 * 120.00174 * 22 20 18 25 25 H 1.48499 * 109.46956 * 239.99767 * 22 20 18 26 26 C 1.46926 * 118.73746 * 306.64197 * 17 16 15 27 27 C 1.52758 * 109.00798 * 53.31275 * 26 17 16 28 28 H 1.08994 * 109.47268 * 180.29522 * 1 2 3 29 29 H 1.09002 * 109.47154 * 300.29743 * 1 2 3 30 30 H 1.09002 * 109.47069 * 60.29554 * 1 2 3 31 31 H 1.09000 * 109.47209 * 270.01598 * 7 6 4 32 32 H 1.08999 * 109.47688 * 30.01992 * 7 6 4 33 33 H 1.09002 * 109.46690 * 150.02406 * 7 6 4 34 34 H 1.08998 * 109.21377 * 217.74435 * 8 6 4 35 35 H 1.09003 * 109.18409 * 98.39130 * 8 6 4 36 36 H 1.08998 * 109.71868 * 287.05097 * 9 8 6 37 37 H 1.09002 * 109.75265 * 166.42115 * 9 8 6 38 38 H 0.97007 * 119.99864 * 4.95303 * 13 11 10 39 39 H 1.09007 * 109.45776 * 324.97716 * 14 13 11 40 40 H 1.09003 * 109.49142 * 58.67702 * 15 14 13 41 41 H 1.08993 * 109.49531 * 298.57796 * 15 14 13 42 42 H 1.09009 * 109.58657 * 294.84905 * 16 15 14 43 43 H 1.09002 * 109.70238 * 174.49501 * 16 15 14 44 44 H 0.96998 * 119.99778 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58377 * 173.14217 * 26 17 16 46 46 H 1.08996 * 109.59412 * 293.56878 * 26 17 16 47 47 H 1.09001 * 109.56872 * 185.54850 * 27 26 17 48 48 H 1.08999 * 109.36452 * 65.49571 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0287 -0.7110 1.2240 5 8 1.9228 -0.1578 2.2981 6 7 2.5864 -1.9220 1.1842 7 6 2.9481 -2.5473 2.4586 8 6 2.8612 -2.6660 -0.0374 9 6 1.9783 -2.1708 -1.1845 10 7 2.0225 -0.6989 -1.1963 11 6 2.5002 -0.0202 -2.2582 12 8 2.9920 -0.6220 -3.1932 13 7 2.4327 1.3257 -2.2837 14 6 2.8516 2.0576 -3.4815 15 6 3.2741 3.4757 -3.0908 16 6 3.7438 4.2268 -4.3406 17 7 2.6807 4.1714 -5.3532 18 6 2.2045 5.3191 -5.9284 19 1 1.1737 5.3770 -6.2452 20 6 3.0483 6.4065 -6.1095 21 7 4.3423 6.2762 -5.9073 22 14 2.3471 8.0546 -6.6401 23 1 0.8752 7.9384 -6.7988 24 1 2.6540 9.0782 -5.6089 25 1 2.9547 8.4576 -7.9338 26 6 2.1340 2.8614 -5.7324 27 6 1.6861 2.1252 -4.4711 28 1 -0.3633 -1.0276 0.0053 29 1 -0.3633 0.5185 0.8873 30 1 -0.3633 0.5092 -0.8926 31 1 3.9692 -2.2715 2.7218 32 1 2.2670 -2.2049 3.2377 33 1 2.8773 -3.6310 2.3646 34 1 2.6651 -3.7242 0.1353 35 1 3.9087 -2.5349 -0.3086 36 1 0.9528 -2.5068 -1.0307 37 1 2.3539 -2.5577 -2.1318 38 1 2.1067 1.8097 -1.5087 39 1 3.6928 1.5430 -3.9459 40 1 4.0888 3.4264 -2.3683 41 1 2.4264 3.9991 -2.6489 42 1 4.6461 3.7567 -4.7320 43 1 3.9537 5.2661 -4.0876 44 1 4.9319 7.0358 -6.0342 45 1 1.2800 3.0000 -6.3955 46 1 2.9021 2.2777 -6.2395 47 1 1.3704 1.1147 -4.7308 48 1 0.8532 2.6613 -4.0161 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614469246.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:15 Heat of formation + Delta-G solvation = -23.845811 kcal Electronic energy + Delta-G solvation = -28871.118008 eV Core-core repulsion = 24962.263566 eV Total energy + Delta-G solvation = -3908.854442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32534 -39.72387 -37.66709 -36.61138 -35.66748 -34.45251 -32.18803 -31.55075 -30.33015 -29.80597 -28.90078 -27.46889 -25.21950 -24.08280 -24.02844 -22.23681 -21.90708 -20.62100 -19.59355 -18.62891 -18.09725 -17.76491 -16.76872 -16.60347 -16.24965 -15.70759 -15.30713 -14.90912 -14.67303 -14.43563 -14.29612 -13.85529 -13.62822 -13.50122 -13.22923 -13.15997 -12.97000 -12.74284 -12.58712 -12.47014 -12.43091 -12.33494 -11.84751 -11.74737 -11.46261 -11.05383 -10.90132 -10.76204 -10.57500 -10.41780 -10.25975 -10.04357 -9.98958 -9.77808 -9.54688 -9.22373 -9.02287 -8.61791 -8.46082 -6.62463 -5.78652 -3.26427 2.16655 2.25419 2.65507 3.17947 3.36703 3.44394 3.46388 3.78188 3.94233 4.33707 4.48741 4.50464 4.64472 4.69861 4.84715 4.90820 5.11930 5.26311 5.29528 5.33281 5.36144 5.42820 5.43141 5.44251 5.51263 5.60382 5.74189 5.81406 5.89794 6.04586 6.10712 6.28927 6.35027 6.47728 6.56861 6.61143 6.73980 6.82221 6.95514 6.96408 7.03035 7.35306 7.66266 7.68670 7.79100 7.93125 8.48010 8.58763 9.22620 9.83724 10.42083 11.29896 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025958 B = 0.002677 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.399297 B =10456.428129 C =10767.864324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.117 0.883 4 C 0.516 3.484 5 O -0.542 6.542 6 N -0.604 5.604 7 C 0.076 3.924 8 C 0.097 3.903 9 C 0.115 3.885 10 N -0.636 5.636 11 C 0.713 3.287 12 O -0.582 6.582 13 N -0.737 5.737 14 C 0.167 3.833 15 C -0.148 4.148 16 C 0.175 3.825 17 N -0.593 5.593 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.905 5.905 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.148 3.852 27 C -0.139 4.139 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.390 0.610 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.094 0.906 44 H 0.254 0.746 45 H 0.055 0.945 46 H 0.020 0.980 47 H 0.053 0.947 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.434 -18.918 14.987 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.134 0.866 4 C 0.303 3.697 5 O -0.418 6.418 6 N -0.336 5.336 7 C -0.066 4.066 8 C -0.027 4.027 9 C -0.009 4.009 10 N -0.376 5.376 11 C 0.414 3.586 12 O -0.459 6.459 13 N -0.391 5.391 14 C 0.063 3.937 15 C -0.188 4.188 16 C 0.049 3.951 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.550 5.550 22 Si 0.735 3.265 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.021 3.979 27 C -0.179 4.179 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.225 0.775 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.991 -18.901 14.747 24.487 hybrid contribution -0.377 0.983 0.182 1.068 sum -5.368 -17.919 14.929 23.933 Atomic orbital electron populations 1.22072 0.91872 1.03376 1.04079 1.21249 0.96707 0.97492 0.82346 0.86565 1.20085 0.77429 0.81347 0.90871 1.90753 1.56783 1.64359 1.29940 1.47155 1.60713 1.17684 1.08093 1.21768 1.01405 0.97545 0.85911 1.21914 1.00771 0.96184 0.83789 1.21789 0.99979 0.79159 0.99965 1.47519 1.67751 1.06361 1.16013 1.15809 0.78588 0.82314 0.81852 1.90921 1.50517 1.68065 1.36403 1.45733 1.69937 1.04258 1.19161 1.20980 0.97345 0.91935 0.83442 1.22571 1.00536 0.94128 1.01529 1.20771 0.89407 1.00220 0.84718 1.44049 1.43044 1.00810 1.43686 1.19226 0.93460 0.90767 1.34618 0.91738 1.25187 0.95004 0.99516 0.99835 1.69965 1.01914 1.29969 1.53158 0.86184 0.78427 0.83951 0.77974 1.20261 1.21603 1.21641 1.20794 0.96813 0.87327 0.92977 1.22326 0.97735 0.99692 0.98154 0.91785 0.90196 0.90407 0.92451 0.90218 0.91030 0.89237 0.90873 0.90561 0.86589 0.77497 0.89855 0.92791 0.92241 0.96107 0.88770 0.93614 0.92608 0.96185 0.92804 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.37 37.16 0.35 -0.91 16 2 C 0.13 1.27 2.90 -69.08 -0.20 1.07 16 3 H 0.12 1.15 6.07 -51.93 -0.32 0.83 16 4 C 0.52 5.66 6.81 -11.90 -0.08 5.58 16 5 O -0.54 -7.56 16.25 5.55 0.09 -7.47 16 6 N -0.60 -5.24 3.20 -182.94 -0.59 -5.83 16 7 C 0.08 0.52 10.19 59.84 0.61 1.13 16 8 C 0.10 0.65 6.57 -4.51 -0.03 0.62 16 9 C 0.11 0.93 6.39 -3.63 -0.02 0.91 16 10 N -0.64 -6.87 2.63 -172.45 -0.45 -7.32 16 11 C 0.71 10.34 8.29 -86.92 -0.72 9.62 16 12 O -0.58 -10.50 15.47 5.29 0.08 -10.42 16 13 N -0.74 -10.48 4.98 -58.64 -0.29 -10.77 16 14 C 0.17 2.89 2.46 -67.89 -0.17 2.73 16 15 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 16 C 0.18 4.11 5.26 -3.71 -0.02 4.09 16 17 N -0.59 -14.74 2.99 -172.58 -0.52 -15.26 16 18 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 19 H 0.06 1.73 7.85 -52.49 -0.41 1.31 16 20 C 0.00 0.08 5.07 -17.43 -0.09 -0.01 16 21 N -0.91 -26.02 11.01 55.49 0.61 -25.41 16 22 Si 0.90 21.52 29.57 -169.99 -5.03 16.49 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.15 3.16 6.49 -3.93 -0.03 3.13 16 27 C -0.14 -2.50 5.63 -26.83 -0.15 -2.65 16 28 H 0.06 0.47 7.52 -51.93 -0.39 0.08 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.64 7.23 -51.93 -0.38 0.26 16 33 H 0.07 0.29 7.80 -51.93 -0.41 -0.11 16 34 H 0.09 0.34 7.84 -51.93 -0.41 -0.07 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.49 7.53 -51.93 -0.39 0.10 16 37 H 0.12 1.04 7.08 -51.93 -0.37 0.67 16 38 H 0.39 4.71 6.30 -40.82 -0.26 4.45 16 39 H 0.08 1.64 7.51 -51.93 -0.39 1.25 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 43 H 0.09 2.46 6.08 -51.93 -0.32 2.15 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -33.56 374.48 -9.09 -42.65 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.80 Total: 2.20 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: -0.84 Total: 15.49 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -1.24 Total: -64.59 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.17 Total: -17.89 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.56 -9.09 -42.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614469246.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.802 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds