Wall clock time and date at job start Fri Apr 10 2020 18:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.69772 * 2 1 4 4 C 1.53327 * 109.67505 * 120.49877 * 2 1 3 5 5 C 1.52918 * 108.68755 * 187.24920 * 4 2 1 6 6 N 1.45747 * 110.48723 * 309.26003 * 5 4 2 7 7 C 1.33358 * 124.10946 * 19.09297 * 6 5 4 8 8 O 1.21281 * 118.24417 * 177.75526 * 7 6 5 9 9 C 1.50179 * 123.50775 * 357.73723 * 7 6 5 10 10 H 1.08997 * 109.39816 * 257.55982 * 9 7 6 11 11 N 1.46493 * 109.39975 * 137.73014 * 9 7 6 12 12 C 1.34780 * 120.00005 * 85.00688 * 11 9 7 13 13 O 1.21587 * 119.99950 * 359.97438 * 12 11 9 14 14 N 1.34776 * 119.99977 * 180.02562 * 12 11 9 15 15 C 1.46497 * 119.99939 * 179.97438 * 14 12 11 16 16 C 1.53039 * 109.46192 * 154.99736 * 15 14 12 17 17 C 1.53193 * 109.31349 * 181.38566 * 16 15 14 18 18 N 1.46928 * 108.77566 * 305.36387 * 17 16 15 19 19 C 1.36932 * 120.63018 * 233.58628 * 18 17 16 20 20 H 1.08001 * 120.00013 * 152.40378 * 19 18 17 21 21 C 1.38818 * 119.99956 * 332.40584 * 19 18 17 22 22 N 1.31619 * 119.99879 * 334.90196 * 21 19 18 23 23 Si 1.86804 * 119.99969 * 154.90683 * 21 19 18 24 24 H 1.48499 * 109.47034 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46708 * 239.99627 * 23 21 19 26 26 H 1.48497 * 109.46998 * 119.99834 * 23 21 19 27 27 C 1.46925 * 118.73831 * 53.85981 * 18 17 16 28 28 C 1.53041 * 109.46226 * 275.06388 * 15 14 12 29 29 H 1.08993 * 109.47455 * 180.51624 * 1 2 3 30 30 H 1.09003 * 109.47176 * 300.52131 * 1 2 3 31 31 H 1.08999 * 109.47059 * 60.51566 * 1 2 3 32 32 H 1.08998 * 109.58650 * 67.49385 * 4 2 1 33 33 H 1.09002 * 109.73713 * 307.09495 * 4 2 1 34 34 H 1.09000 * 109.30474 * 188.94276 * 5 4 2 35 35 H 1.09004 * 109.29650 * 69.56985 * 5 4 2 36 36 H 0.97001 * 117.94748 * 199.07677 * 6 5 4 37 37 H 0.97001 * 120.00354 * 264.99462 * 11 9 7 38 38 H 0.96995 * 120.00202 * 359.97438 * 14 12 11 39 39 H 1.09005 * 109.46084 * 35.02103 * 15 14 12 40 40 H 1.08993 * 109.50171 * 61.43264 * 16 15 14 41 41 H 1.09009 * 109.52089 * 301.35249 * 16 15 14 42 42 H 1.09002 * 109.58851 * 185.57662 * 17 16 15 43 43 H 1.09003 * 109.70662 * 65.22113 * 17 16 15 44 44 H 0.97004 * 119.99976 * 354.25698 * 22 21 19 45 45 H 1.09006 * 109.58146 * 65.92609 * 27 18 17 46 46 H 1.08996 * 109.58709 * 186.35137 * 27 18 17 47 47 H 1.09000 * 109.49771 * 298.56742 * 28 15 14 48 48 H 1.09007 * 109.49505 * 58.65866 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0462 -0.7327 1.2440 5 6 3.5643 -0.5638 1.3174 6 7 4.1793 -0.9201 0.0450 7 6 3.5210 -0.9793 -1.1132 8 8 4.1475 -1.2476 -2.1164 9 6 2.0453 -0.7319 -1.2417 10 1 1.5257 -1.6849 -1.3404 11 7 1.7907 0.0866 -2.4297 12 6 1.6674 -0.4988 -3.6375 13 8 1.7680 -1.7060 -3.7411 14 7 1.4337 0.2543 -4.7306 15 6 1.3003 -0.3819 -6.0434 16 6 0.4602 0.5108 -6.9596 17 6 0.2937 -0.1734 -8.3201 18 7 1.6242 -0.5004 -8.8508 19 6 1.9968 -0.0881 -10.1023 20 1 3.0396 0.0796 -10.3275 21 6 1.0340 0.1146 -11.0816 22 7 -0.1160 -0.5224 -11.0157 23 14 1.3705 1.2911 -12.4930 24 1 2.7263 1.8765 -12.3369 25 1 0.3584 2.3779 -12.4834 26 1 1.2939 0.5547 -13.7802 27 6 2.5450 -1.2835 -8.0157 28 6 2.6882 -0.5821 -6.6565 29 1 -0.3634 -1.0275 0.0093 30 1 -0.3634 0.5219 0.8853 31 1 -0.3633 0.5058 -0.8946 32 1 1.7991 -1.7920 1.1730 33 1 1.5875 -0.3093 2.1375 34 1 3.9610 -1.2079 2.1022 35 1 3.8003 0.4738 1.5536 36 1 5.1270 -1.1270 0.0403 37 1 1.7107 1.0497 -2.3471 38 1 1.3539 1.2174 -4.6480 39 1 0.8106 -1.3491 -5.9302 40 1 0.9616 1.4693 -7.0933 41 1 -0.5202 0.6726 -6.5113 42 1 -0.2185 0.4998 -9.0075 43 1 -0.2878 -1.0879 -8.2029 44 1 -0.2595 -1.1947 -10.3313 45 1 2.1441 -2.2869 -7.8718 46 1 3.5186 -1.3431 -8.5021 47 1 3.1688 0.3866 -6.7930 48 1 3.2938 -1.1987 -5.9922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619658054.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:24 Heat of formation + Delta-G solvation = -51.314107 kcal Electronic energy + Delta-G solvation = -28536.301748 eV Core-core repulsion = 24626.256191 eV Total energy + Delta-G solvation = -3910.045557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.04219 -39.49618 -37.55127 -37.15551 -35.27261 -34.38633 -33.05693 -31.95114 -30.20801 -29.59328 -28.98450 -27.56211 -24.82777 -23.83883 -22.27865 -22.18876 -21.80907 -20.51832 -19.89319 -19.37883 -18.01331 -17.67231 -17.26992 -16.81239 -16.57330 -15.36846 -14.93972 -14.79515 -14.66922 -14.25170 -14.22474 -14.06859 -13.72680 -13.64894 -13.45659 -13.27259 -13.22351 -12.76501 -12.62252 -12.34871 -12.18512 -11.82042 -11.53996 -11.40009 -11.26833 -10.99223 -10.77598 -10.65194 -10.35833 -10.26440 -10.19561 -10.03317 -9.92259 -9.77941 -9.36857 -9.24642 -9.09775 -8.55645 -8.29823 -6.82941 -6.01487 -3.16649 2.27483 2.82167 3.01634 3.50122 3.54385 3.57113 3.71118 4.02862 4.11579 4.15794 4.27792 4.43707 4.64571 4.76036 4.81665 4.92369 5.13827 5.22435 5.24448 5.29129 5.33907 5.39567 5.42972 5.53385 5.61366 5.65100 5.79184 5.88660 6.05478 6.25788 6.27116 6.34281 6.39673 6.51623 6.54071 6.64040 6.83574 6.90441 6.92273 7.02271 7.07184 7.10979 7.24940 8.03368 8.08047 8.17511 8.63429 8.82974 9.18181 9.90918 10.36127 11.27144 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.031145 B = 0.002473 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.800590 B =11320.699029 C =11758.761056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.130 4.130 5 C 0.110 3.890 6 N -0.726 5.726 7 C 0.497 3.503 8 O -0.521 6.521 9 C 0.163 3.837 10 H 0.119 0.881 11 N -0.735 5.735 12 C 0.709 3.291 13 O -0.576 6.576 14 N -0.738 5.738 15 C 0.172 3.828 16 C -0.140 4.140 17 C 0.154 3.846 18 N -0.600 5.600 19 C -0.346 4.346 20 H 0.056 0.944 21 C -0.027 4.027 22 N -0.919 5.919 23 Si 1.069 2.931 24 H -0.293 1.293 25 H -0.291 1.291 26 H -0.294 1.294 27 C 0.150 3.850 28 C -0.140 4.140 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.396 0.604 38 H 0.390 0.610 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.019 0.981 44 H 0.269 0.731 45 H 0.019 0.981 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.093 4.682 30.111 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.168 4.168 5 C -0.015 4.015 6 N -0.381 5.381 7 C 0.281 3.719 8 O -0.394 6.394 9 C 0.053 3.947 10 H 0.137 0.863 11 N -0.391 5.391 12 C 0.409 3.591 13 O -0.452 6.452 14 N -0.392 5.392 15 C 0.068 3.932 16 C -0.180 4.180 17 C 0.027 3.973 18 N -0.324 5.324 19 C -0.475 4.475 20 H 0.074 0.926 21 C -0.228 4.228 22 N -0.559 5.559 23 Si 0.899 3.101 24 H -0.219 1.219 25 H -0.217 1.217 26 H -0.222 1.222 27 C 0.023 3.977 28 C -0.180 4.180 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.230 0.770 38 H 0.223 0.777 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.037 0.963 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.610 4.153 28.037 28.388 hybrid contribution 1.166 0.149 1.673 2.045 sum 2.776 4.302 29.710 30.148 Atomic orbital electron populations 1.21815 0.93278 1.02781 1.02459 1.21546 0.97463 1.00052 0.92970 0.89824 1.21942 0.94378 1.02145 0.98378 1.21372 0.93776 1.00846 0.85500 1.45588 1.13374 1.71484 1.07644 1.20837 0.91041 0.77070 0.82948 1.90843 1.67574 1.45934 1.35068 1.20574 0.91416 0.97696 0.84989 0.86346 1.44807 1.79007 1.09688 1.05624 1.15880 0.77481 0.85684 0.80074 1.90927 1.56945 1.12430 1.84866 1.45434 1.77337 1.09611 1.06799 1.20844 0.96677 0.96721 0.79001 1.22404 0.98209 0.99443 0.97960 1.20904 0.87997 0.97092 0.91258 1.44198 1.12888 1.60673 1.14666 1.20045 0.94914 1.44521 0.88006 0.92573 1.25842 0.95450 1.01777 0.99766 1.70718 1.26856 1.23369 1.35000 0.83479 0.74843 0.76204 0.75563 1.21888 1.21730 1.22151 1.20965 0.94558 0.92647 0.89522 1.22450 0.96215 1.01108 0.98230 0.92059 0.91952 0.91867 0.90395 0.89022 0.90417 0.91670 0.76683 0.77033 0.77740 0.90154 0.91917 0.92604 0.89805 0.96288 0.91957 0.96295 0.92482 0.92462 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.12 37.16 0.34 -0.40 16 2 C -0.10 -0.55 2.30 -90.42 -0.21 -0.76 16 3 H 0.08 0.39 8.10 -51.93 -0.42 -0.04 16 4 C -0.13 -0.47 5.32 -26.60 -0.14 -0.62 16 5 C 0.11 0.42 7.17 -4.49 -0.03 0.39 16 6 N -0.73 -5.71 5.45 -61.39 -0.33 -6.05 16 7 C 0.50 6.07 7.44 -11.87 -0.09 5.99 16 8 O -0.52 -9.38 16.58 4.62 0.08 -9.30 16 9 C 0.16 1.66 2.07 -69.30 -0.14 1.52 16 10 H 0.12 1.42 7.52 -51.93 -0.39 1.03 16 11 N -0.73 -8.35 4.70 -60.03 -0.28 -8.64 16 12 C 0.71 11.49 7.96 -86.92 -0.69 10.80 16 13 O -0.58 -12.01 15.24 4.36 0.07 -11.95 16 14 N -0.74 -11.25 5.08 -58.63 -0.30 -11.55 16 15 C 0.17 3.20 2.41 -67.89 -0.16 3.04 16 16 C -0.14 -2.64 5.55 -26.61 -0.15 -2.78 16 17 C 0.15 3.66 4.69 -3.71 -0.02 3.65 16 18 N -0.60 -15.60 2.85 -172.05 -0.49 -16.08 16 19 C -0.35 -9.90 9.49 -15.06 -0.14 -10.04 16 20 H 0.06 1.63 7.94 -52.49 -0.42 1.21 16 21 C -0.03 -0.77 4.68 -17.43 -0.08 -0.85 16 22 N -0.92 -27.90 12.40 55.49 0.69 -27.21 16 23 Si 1.07 25.72 29.99 -169.99 -5.10 20.62 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.15 3.48 6.54 -3.49 -0.02 3.45 16 28 C -0.14 -2.85 5.67 -26.39 -0.15 -3.00 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.38 7.97 -51.93 -0.41 -0.03 16 32 H 0.08 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 34 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.40 2.95 8.80 -40.82 -0.36 2.59 16 37 H 0.40 3.24 8.60 -40.82 -0.35 2.88 16 38 H 0.39 4.71 8.62 -40.82 -0.35 4.36 16 39 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 42 H 0.08 2.20 6.29 -51.93 -0.33 1.87 16 43 H 0.02 0.47 7.86 -51.93 -0.41 0.06 16 44 H 0.27 8.27 6.71 -40.82 -0.27 8.00 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -38.06 377.51 -9.64 -47.70 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.96 Total: 6.39 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -1.69 Total: 10.38 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -0.72 Total: -69.53 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.14 Total: -21.24 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.10 Total: 20.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.06 -9.64 -47.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619658054.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.614 kcal (2) G-P(sol) polarization free energy of solvation -38.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds