Wall clock time and date at job start Fri Apr 10 2020 18:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.69772 * 2 1 4 4 C 1.53327 * 109.67505 * 120.49877 * 2 1 3 5 5 C 1.52918 * 108.68755 * 187.24920 * 4 2 1 6 6 N 1.45747 * 110.48723 * 309.26003 * 5 4 2 7 7 C 1.33358 * 124.10946 * 19.09297 * 6 5 4 8 8 O 1.21281 * 118.24417 * 177.75526 * 7 6 5 9 9 C 1.50179 * 123.50775 * 357.73723 * 7 6 5 10 10 H 1.08997 * 109.39816 * 257.55982 * 9 7 6 11 11 N 1.46493 * 109.39975 * 137.73014 * 9 7 6 12 12 C 1.34780 * 120.00005 * 85.00688 * 11 9 7 13 13 O 1.21587 * 119.99950 * 359.97438 * 12 11 9 14 14 N 1.34776 * 119.99977 * 180.02562 * 12 11 9 15 15 C 1.46497 * 119.99939 * 179.97438 * 14 12 11 16 16 C 1.53039 * 109.46192 * 154.99736 * 15 14 12 17 17 C 1.53193 * 109.31349 * 181.38566 * 16 15 14 18 18 N 1.46928 * 108.77566 * 305.36387 * 17 16 15 19 19 C 1.36932 * 120.63018 * 233.58628 * 18 17 16 20 20 H 1.08001 * 120.00013 * 152.40378 * 19 18 17 21 21 C 1.38818 * 119.99956 * 332.40584 * 19 18 17 22 22 N 1.31619 * 119.99879 * 334.90196 * 21 19 18 23 23 Si 1.86804 * 119.99969 * 154.90683 * 21 19 18 24 24 H 1.48499 * 109.47034 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46708 * 239.99627 * 23 21 19 26 26 H 1.48497 * 109.46998 * 119.99834 * 23 21 19 27 27 C 1.46925 * 118.73831 * 53.85981 * 18 17 16 28 28 C 1.53041 * 109.46226 * 275.06388 * 15 14 12 29 29 H 1.08993 * 109.47455 * 180.51624 * 1 2 3 30 30 H 1.09003 * 109.47176 * 300.52131 * 1 2 3 31 31 H 1.08999 * 109.47059 * 60.51566 * 1 2 3 32 32 H 1.08998 * 109.58650 * 67.49385 * 4 2 1 33 33 H 1.09002 * 109.73713 * 307.09495 * 4 2 1 34 34 H 1.09000 * 109.30474 * 188.94276 * 5 4 2 35 35 H 1.09004 * 109.29650 * 69.56985 * 5 4 2 36 36 H 0.97001 * 117.94748 * 199.07677 * 6 5 4 37 37 H 0.97001 * 120.00354 * 264.99462 * 11 9 7 38 38 H 0.96995 * 120.00202 * 359.97438 * 14 12 11 39 39 H 1.09005 * 109.46084 * 35.02103 * 15 14 12 40 40 H 1.08993 * 109.50171 * 61.43264 * 16 15 14 41 41 H 1.09009 * 109.52089 * 301.35249 * 16 15 14 42 42 H 1.09002 * 109.58851 * 185.57662 * 17 16 15 43 43 H 1.09003 * 109.70662 * 65.22113 * 17 16 15 44 44 H 0.97004 * 119.99976 * 354.25698 * 22 21 19 45 45 H 1.09006 * 109.58146 * 65.92609 * 27 18 17 46 46 H 1.08996 * 109.58709 * 186.35137 * 27 18 17 47 47 H 1.09000 * 109.49771 * 298.56742 * 28 15 14 48 48 H 1.09007 * 109.49505 * 58.65866 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0462 -0.7327 1.2440 5 6 3.5643 -0.5638 1.3174 6 7 4.1793 -0.9201 0.0450 7 6 3.5210 -0.9793 -1.1132 8 8 4.1475 -1.2476 -2.1164 9 6 2.0453 -0.7319 -1.2417 10 1 1.5257 -1.6849 -1.3404 11 7 1.7907 0.0866 -2.4297 12 6 1.6674 -0.4988 -3.6375 13 8 1.7680 -1.7060 -3.7411 14 7 1.4337 0.2543 -4.7306 15 6 1.3003 -0.3819 -6.0434 16 6 0.4602 0.5108 -6.9596 17 6 0.2937 -0.1734 -8.3201 18 7 1.6242 -0.5004 -8.8508 19 6 1.9968 -0.0881 -10.1023 20 1 3.0396 0.0796 -10.3275 21 6 1.0340 0.1146 -11.0816 22 7 -0.1160 -0.5224 -11.0157 23 14 1.3705 1.2911 -12.4930 24 1 2.7263 1.8765 -12.3369 25 1 0.3584 2.3779 -12.4834 26 1 1.2939 0.5547 -13.7802 27 6 2.5450 -1.2835 -8.0157 28 6 2.6882 -0.5821 -6.6565 29 1 -0.3634 -1.0275 0.0093 30 1 -0.3634 0.5219 0.8853 31 1 -0.3633 0.5058 -0.8946 32 1 1.7991 -1.7920 1.1730 33 1 1.5875 -0.3093 2.1375 34 1 3.9610 -1.2079 2.1022 35 1 3.8003 0.4738 1.5536 36 1 5.1270 -1.1270 0.0403 37 1 1.7107 1.0497 -2.3471 38 1 1.3539 1.2174 -4.6480 39 1 0.8106 -1.3491 -5.9302 40 1 0.9616 1.4693 -7.0933 41 1 -0.5202 0.6726 -6.5113 42 1 -0.2185 0.4998 -9.0075 43 1 -0.2878 -1.0879 -8.2029 44 1 -0.2595 -1.1947 -10.3313 45 1 2.1441 -2.2869 -7.8718 46 1 3.5186 -1.3431 -8.5021 47 1 3.1688 0.3866 -6.7930 48 1 3.2938 -1.1987 -5.9922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619658054.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:23 Heat of formation + Delta-G solvation = -81.737259 kcal Electronic energy + Delta-G solvation = -28537.620995 eV Core-core repulsion = 24626.256191 eV Total energy + Delta-G solvation = -3911.364804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.95606 -40.74428 -39.22195 -37.95580 -36.39085 -35.89202 -34.23653 -33.48178 -31.93355 -31.03802 -29.92898 -28.38939 -26.71055 -24.59900 -24.06773 -23.60129 -22.72999 -21.75424 -21.12178 -20.60837 -19.59347 -18.98143 -18.41193 -17.70722 -17.53983 -16.60917 -16.22271 -16.06384 -15.88745 -15.55065 -15.44864 -15.34936 -15.19939 -15.12347 -14.79685 -14.46765 -14.20115 -14.11303 -13.72414 -13.45151 -13.24007 -12.85570 -12.68267 -12.64379 -12.52025 -12.33043 -12.13002 -11.96149 -11.85978 -11.84855 -11.74641 -11.60966 -11.42526 -11.27266 -11.19148 -10.49161 -10.27575 -10.04612 -9.82387 -8.98569 -8.27203 -5.41912 1.28537 1.59810 1.67717 1.82916 1.84814 2.07792 2.42441 2.65549 3.17748 3.22119 3.44941 3.50585 3.59338 3.76668 3.78149 3.92491 3.94856 4.21256 4.25037 4.29536 4.46502 4.48257 4.51573 4.62033 4.62180 4.71049 4.85622 4.86879 4.95429 4.96990 5.00651 5.02352 5.08901 5.11288 5.15260 5.24059 5.35470 5.37887 5.43826 5.53111 5.82741 5.83808 5.94018 6.29744 6.37311 7.02211 7.06306 7.20854 7.59869 7.75334 8.19427 8.98222 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.031145 B = 0.002473 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.800590 B =11320.699029 C =11758.761056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.103 0.897 4 C -0.128 4.128 5 C 0.101 3.899 6 N -0.712 5.712 7 C 0.491 3.509 8 O -0.592 6.592 9 C 0.161 3.839 10 H 0.095 0.905 11 N -0.715 5.715 12 C 0.705 3.295 13 O -0.626 6.626 14 N -0.726 5.726 15 C 0.184 3.816 16 C -0.121 4.121 17 C 0.157 3.843 18 N -0.616 5.616 19 C -0.356 4.356 20 H 0.049 0.951 21 C -0.075 4.075 22 N -0.941 5.941 23 Si 1.122 2.878 24 H -0.275 1.275 25 H -0.282 1.282 26 H -0.292 1.292 27 C 0.148 3.852 28 C -0.123 4.123 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.400 0.600 37 H 0.414 0.586 38 H 0.410 0.590 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.003 0.997 44 H 0.254 0.746 45 H 0.008 0.992 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 7.365 33.141 34.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.121 0.879 4 C -0.166 4.166 5 C -0.021 4.021 6 N -0.364 5.364 7 C 0.276 3.724 8 O -0.472 6.472 9 C 0.051 3.949 10 H 0.112 0.888 11 N -0.372 5.372 12 C 0.405 3.595 13 O -0.506 6.506 14 N -0.381 5.381 15 C 0.079 3.921 16 C -0.160 4.160 17 C 0.031 3.969 18 N -0.340 5.340 19 C -0.486 4.486 20 H 0.067 0.933 21 C -0.271 4.271 22 N -0.583 5.583 23 Si 0.946 3.054 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.219 1.219 27 C 0.022 3.978 28 C -0.163 4.163 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.235 0.765 37 H 0.252 0.748 38 H 0.246 0.754 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.021 0.979 44 H 0.064 0.936 45 H 0.026 0.974 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.542 6.903 31.207 31.998 hybrid contribution 1.231 -0.774 0.873 1.697 sum 2.773 6.129 32.080 32.778 Atomic orbital electron populations 1.21813 0.92777 1.02397 1.03165 1.21566 0.97694 1.00503 0.91048 0.87908 1.22017 0.94250 1.01747 0.98582 1.21770 0.93866 1.02795 0.83680 1.45637 1.13521 1.69234 1.07995 1.21188 0.91686 0.76339 0.83158 1.90812 1.69038 1.49584 1.37732 1.20775 0.90297 0.97474 0.86355 0.88766 1.44599 1.77409 1.10759 1.04465 1.16092 0.77073 0.85079 0.81265 1.90898 1.59043 1.14887 1.85779 1.45021 1.77205 1.10471 1.05374 1.20423 0.95126 0.96047 0.80526 1.22147 1.00015 0.98849 0.95018 1.20814 0.86555 0.96244 0.93260 1.44423 1.13825 1.61315 1.14484 1.20275 0.94799 1.44216 0.89296 0.93305 1.27279 0.94957 1.02664 1.02186 1.70848 1.27981 1.24215 1.35252 0.82775 0.75712 0.74350 0.72548 1.20045 1.20787 1.21921 1.21000 0.93712 0.92313 0.90751 1.22227 0.97347 1.00547 0.96202 0.93093 0.89451 0.92885 0.91218 0.85596 0.87976 0.89306 0.76471 0.74826 0.75407 0.92513 0.90922 0.89570 0.92325 0.97857 0.93633 0.97417 0.93039 0.91947 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.12 71.98 0.66 -0.41 16 2 C -0.09 -0.71 2.30 -10.66 -0.02 -0.73 16 3 H 0.10 0.49 8.10 -2.38 -0.02 0.47 16 4 C -0.13 -0.46 5.32 30.68 0.16 -0.29 16 5 C 0.10 0.40 7.17 86.49 0.62 1.02 16 6 N -0.71 -10.07 5.45 -467.32 -2.55 -12.61 16 7 C 0.49 11.93 7.44 87.71 0.65 12.59 16 8 O -0.59 -22.18 16.58 -2.14 -0.04 -22.22 16 9 C 0.16 3.17 2.07 44.11 0.09 3.26 16 10 H 0.09 2.36 7.52 -2.39 -0.02 2.34 16 11 N -0.72 -15.63 4.70 -462.11 -2.17 -17.81 16 12 C 0.70 22.92 7.96 179.05 1.43 24.35 16 13 O -0.63 -27.18 15.24 -3.10 -0.05 -27.22 16 14 N -0.73 -21.44 5.08 -457.68 -2.33 -23.77 16 15 C 0.18 6.88 2.41 45.02 0.11 6.99 16 16 C -0.12 -4.43 5.55 30.67 0.17 -4.26 16 17 C 0.16 7.64 4.69 86.36 0.41 8.04 16 18 N -0.62 -32.79 2.85 -698.25 -1.99 -34.77 16 19 C -0.36 -20.74 9.49 84.04 0.80 -19.94 16 20 H 0.05 2.87 7.94 -2.91 -0.02 2.84 16 21 C -0.07 -4.34 4.68 84.86 0.40 -3.94 16 22 N -0.94 -58.37 12.40 21.65 0.27 -58.10 16 23 Si 1.12 51.82 29.99 68.60 2.06 53.88 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 C 0.15 7.13 6.54 86.51 0.57 7.70 16 28 C -0.12 -5.10 5.67 30.82 0.17 -4.92 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.05 0.51 7.97 -2.39 -0.02 0.49 16 32 H 0.07 0.41 8.12 -2.39 -0.02 0.39 16 33 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.40 5.50 8.80 -92.71 -0.82 4.69 16 37 H 0.41 5.83 8.60 -92.71 -0.80 5.04 16 38 H 0.41 8.92 8.62 -92.71 -0.80 8.12 16 39 H 0.06 2.43 7.58 -2.38 -0.02 2.41 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 42 H 0.06 3.14 6.29 -2.39 -0.02 3.12 16 43 H 0.00 0.17 7.86 -2.39 -0.02 0.16 16 44 H 0.25 16.17 6.71 -92.71 -0.62 15.55 16 45 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 46 H 0.05 2.47 7.93 -2.39 -0.02 2.45 16 47 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 48 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -88.27 377.51 -1.86 -90.13 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -1.28 Total: 23.05 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 6.20 Total: 29.44 kcal Atomic # 7 Polarization: -138.30 SS G_CDS: -8.76 Total: -147.06 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.08 Total: -49.44 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.06 Total: 53.88 kcal Total: -88.27 -1.86 -90.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619658054.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.392 kcal (2) G-P(sol) polarization free energy of solvation -88.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds