Wall clock time and date at job start Fri Apr 10 2020 18:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.67412 * 2 1 4 4 C 1.53353 * 109.67470 * 239.46355 * 2 1 3 5 5 C 1.52910 * 108.67380 * 172.73751 * 4 2 1 6 6 N 1.45755 * 110.48977 * 50.75618 * 5 4 2 7 7 C 1.33354 * 124.10404 * 340.91993 * 6 5 4 8 8 O 1.21284 * 118.24334 * 182.22304 * 7 6 5 9 9 C 1.50174 * 123.51007 * 2.22575 * 7 6 5 10 10 H 1.09004 * 109.33293 * 102.50011 * 9 7 6 11 11 N 1.46498 * 109.40552 * 222.28590 * 9 7 6 12 12 C 1.34775 * 120.00166 * 275.43441 * 11 9 7 13 13 O 1.21584 * 120.00007 * 359.97438 * 12 11 9 14 14 N 1.34772 * 119.99965 * 179.97438 * 12 11 9 15 15 C 1.46507 * 120.00046 * 179.97438 * 14 12 11 16 16 C 1.53034 * 109.46060 * 204.99876 * 15 14 12 17 17 C 1.53197 * 109.31345 * 178.62822 * 16 15 14 18 18 N 1.46927 * 108.77557 * 54.63366 * 17 16 15 19 19 C 1.36930 * 120.62962 * 126.11563 * 18 17 16 20 20 H 1.07998 * 120.00455 * 331.86989 * 19 18 17 21 21 C 1.38815 * 119.99816 * 151.86413 * 19 18 17 22 22 N 1.31621 * 119.99984 * 343.18964 * 21 19 18 23 23 Si 1.86800 * 120.00122 * 163.18643 * 21 19 18 24 24 H 1.48503 * 109.47174 * 60.00002 * 23 21 19 25 25 H 1.48497 * 109.47073 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47370 * 300.00248 * 23 21 19 27 27 C 1.46931 * 118.73501 * 306.39518 * 18 17 16 28 28 C 1.53038 * 109.44930 * 84.93308 * 15 14 12 29 29 H 1.09003 * 109.47081 * 299.50247 * 1 2 3 30 30 H 1.09004 * 109.47256 * 59.49793 * 1 2 3 31 31 H 1.08999 * 109.47792 * 179.50038 * 1 2 3 32 32 H 1.09000 * 109.59940 * 292.49921 * 4 2 1 33 33 H 1.09002 * 109.59732 * 52.98051 * 4 2 1 34 34 H 1.09001 * 109.30384 * 171.06614 * 5 4 2 35 35 H 1.09005 * 109.30591 * 290.44363 * 5 4 2 36 36 H 0.97003 * 117.94808 * 160.92570 * 6 5 4 37 37 H 0.97003 * 119.99975 * 95.42618 * 11 9 7 38 38 H 0.96996 * 120.00547 * 359.97438 * 14 12 11 39 39 H 1.09007 * 109.45715 * 324.97322 * 15 14 12 40 40 H 1.09000 * 109.50237 * 58.67531 * 16 15 14 41 41 H 1.08996 * 109.52407 * 298.59190 * 16 15 14 42 42 H 1.08998 * 109.58233 * 294.85132 * 17 16 15 43 43 H 1.08991 * 109.58610 * 174.42064 * 17 16 15 44 44 H 0.97002 * 120.00123 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.57915 * 173.39752 * 27 18 17 46 46 H 1.09003 * 109.58727 * 293.81523 * 27 18 17 47 47 H 1.09000 * 109.50124 * 301.33753 * 28 15 14 48 48 H 1.09004 * 109.49546 * 61.39988 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0463 -0.7337 -1.2437 5 6 3.5642 -0.5644 -1.3171 6 7 4.1794 -0.9199 -0.0445 7 6 3.5209 -0.9790 1.1136 8 8 4.1473 -1.2470 2.1170 9 6 2.0453 -0.7315 1.2419 10 1 1.5267 -1.6851 1.3416 11 7 1.7905 0.0873 2.4297 12 6 1.6760 -0.4967 3.6389 13 8 1.7835 -1.7032 3.7440 14 7 1.4421 0.2567 4.7317 15 6 1.3170 -0.3782 6.0461 16 6 0.4754 0.5113 6.9639 17 6 0.3180 -0.1715 8.3262 18 7 1.6523 -0.4902 8.8524 19 6 2.0296 -0.0685 10.0993 20 1 1.6002 0.8294 10.5186 21 6 2.9639 -0.7951 10.8246 22 7 3.2410 -2.0359 10.4841 23 14 3.8279 -0.0119 12.2839 24 1 2.8206 0.3904 13.2981 25 1 4.7706 -0.9898 12.8841 26 1 4.5790 1.1860 11.8299 27 6 2.5763 -1.2648 8.0127 28 6 2.7083 -0.5697 6.6540 29 1 -0.3633 0.5061 0.8944 30 1 -0.3634 0.5216 -0.8855 31 1 -0.3634 -1.0276 -0.0090 32 1 1.7994 -1.7929 -1.1722 33 1 1.5872 -0.3082 -2.1361 34 1 3.9611 -1.2088 -2.1016 35 1 3.8001 0.4732 -1.5538 36 1 5.1271 -1.1264 -0.0396 37 1 1.7044 1.0499 2.3459 38 1 1.3566 1.2192 4.6480 39 1 0.8321 -1.3483 5.9361 40 1 -0.5075 0.6665 6.5190 41 1 0.9716 1.4730 7.0943 42 1 -0.2579 -1.0896 8.2103 43 1 -0.1953 0.4999 9.0144 44 1 3.8936 -2.5439 10.9911 45 1 3.5530 -1.3146 8.4941 46 1 2.1845 -2.2721 7.8713 47 1 3.3148 -1.1840 5.9884 48 1 3.1843 0.4019 6.7867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619658056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:29 Heat of formation + Delta-G solvation = -47.830275 kcal Electronic energy + Delta-G solvation = -28554.017135 eV Core-core repulsion = 24644.122648 eV Total energy + Delta-G solvation = -3909.894486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.97504 -39.40116 -37.38409 -37.08111 -35.17313 -34.19554 -32.96837 -31.87792 -29.96957 -29.61531 -29.11534 -27.53699 -24.91344 -23.81269 -22.18099 -22.08376 -21.78315 -20.44237 -19.83196 -19.32040 -17.91451 -17.59156 -16.78103 -16.70640 -16.41152 -15.30088 -14.91491 -14.68356 -14.66721 -14.51203 -14.13217 -13.91911 -13.67411 -13.57460 -13.37694 -13.22645 -12.89882 -12.66643 -12.45135 -12.25187 -12.13751 -11.77748 -11.39250 -11.35586 -11.21815 -11.01510 -10.84446 -10.65093 -10.30525 -10.22597 -10.16096 -9.98415 -9.83775 -9.65140 -9.43800 -9.30433 -9.01705 -8.51409 -8.28798 -6.59111 -5.70028 -3.13309 2.34880 2.89172 3.08653 3.43848 3.49705 3.50776 3.58991 4.07676 4.16133 4.21147 4.33694 4.50376 4.56406 4.80410 4.85940 4.97005 5.17589 5.26450 5.29537 5.37401 5.41349 5.45250 5.49986 5.56112 5.68407 5.77613 5.82149 5.95086 6.20923 6.32824 6.33938 6.48590 6.58298 6.59741 6.71324 6.75106 6.88420 7.04427 7.05501 7.09899 7.21424 7.51502 7.79811 7.87496 8.10862 8.25814 8.53980 8.92342 9.29445 9.93044 10.50284 11.38435 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.002611 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.673825 B =10720.977601 C =11408.559356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.130 4.130 5 C 0.110 3.890 6 N -0.727 5.727 7 C 0.496 3.504 8 O -0.518 6.518 9 C 0.164 3.836 10 H 0.119 0.881 11 N -0.735 5.735 12 C 0.708 3.292 13 O -0.573 6.573 14 N -0.739 5.739 15 C 0.171 3.829 16 C -0.138 4.138 17 C 0.149 3.851 18 N -0.593 5.593 19 C -0.255 4.255 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.175 3.825 28 C -0.147 4.147 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.395 0.605 38 H 0.388 0.612 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.020 0.980 43 H 0.057 0.943 44 H 0.254 0.746 45 H 0.088 0.912 46 H 0.020 0.980 47 H 0.056 0.944 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 7.539 -28.682 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.168 4.168 5 C -0.015 4.015 6 N -0.382 5.382 7 C 0.280 3.720 8 O -0.391 6.391 9 C 0.054 3.946 10 H 0.136 0.864 11 N -0.392 5.392 12 C 0.408 3.592 13 O -0.449 6.449 14 N -0.392 5.392 15 C 0.067 3.933 16 C -0.178 4.178 17 C 0.022 3.978 18 N -0.315 5.315 19 C -0.384 4.384 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.048 3.952 28 C -0.187 4.187 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.229 0.771 38 H 0.221 0.779 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.039 0.961 47 H 0.074 0.926 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.514 6.159 -27.870 28.897 hybrid contribution 0.949 1.244 0.450 1.628 sum -3.565 7.403 -27.420 28.625 Atomic orbital electron populations 1.21813 0.93334 1.02760 1.02392 1.21549 0.97411 1.00042 0.93018 0.89847 1.21946 0.94405 1.02125 0.98352 1.21363 0.93759 1.00800 0.85546 1.45593 1.13366 1.71598 1.07615 1.20848 0.91064 0.77155 0.82963 1.90861 1.67533 1.45727 1.35002 1.20568 0.91431 0.97664 0.84986 0.86381 1.44818 1.79132 1.09713 1.05551 1.15883 0.77564 0.85714 0.80054 1.90938 1.56657 1.12483 1.84821 1.45461 1.77387 1.09551 1.06842 1.20885 0.97266 0.96438 0.78729 1.22346 0.98137 0.99437 0.97896 1.20831 0.88740 0.96655 0.91571 1.44093 1.09052 1.63708 1.14696 1.19117 1.22472 1.04394 0.92455 0.91778 1.25068 1.01862 0.94829 0.97876 1.70031 1.35417 1.07421 1.41591 0.86376 0.79538 0.78423 0.82437 1.20922 1.21657 1.21092 1.20755 0.96499 0.91565 0.86358 1.22569 0.95410 1.01175 0.99590 0.91884 0.92010 0.92065 0.90375 0.89081 0.90464 0.91725 0.76684 0.77120 0.77933 0.90141 0.92745 0.91993 0.96191 0.92416 0.93548 0.89398 0.96146 0.92570 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.13 37.16 0.34 -0.41 16 2 C -0.10 -0.57 2.30 -90.40 -0.21 -0.78 16 3 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 4 C -0.13 -0.51 5.32 -26.59 -0.14 -0.65 16 5 C 0.11 0.47 7.17 -4.49 -0.03 0.43 16 6 N -0.73 -6.10 5.45 -61.39 -0.33 -6.43 16 7 C 0.50 6.35 7.44 -11.87 -0.09 6.26 16 8 O -0.52 -9.75 16.53 3.76 0.06 -9.69 16 9 C 0.16 1.73 2.07 -69.30 -0.14 1.58 16 10 H 0.12 1.46 7.54 -51.93 -0.39 1.07 16 11 N -0.74 -8.60 4.71 -60.03 -0.28 -8.89 16 12 C 0.71 11.80 7.95 -86.92 -0.69 11.11 16 13 O -0.57 -12.37 15.21 3.50 0.05 -12.32 16 14 N -0.74 -11.43 5.08 -58.63 -0.30 -11.73 16 15 C 0.17 3.23 2.42 -67.89 -0.16 3.06 16 16 C -0.14 -2.41 5.55 -26.61 -0.15 -2.56 16 17 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 18 N -0.59 -15.45 2.99 -172.32 -0.52 -15.96 16 19 C -0.25 -7.19 9.58 -15.06 -0.14 -7.33 16 20 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 21 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -27.28 11.20 55.49 0.62 -26.66 16 23 Si 0.90 22.32 29.59 -169.99 -5.03 17.29 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.17 4.53 5.31 -3.71 -0.02 4.51 16 28 C -0.15 -3.25 5.65 -26.62 -0.15 -3.40 16 29 H 0.06 0.38 7.97 -51.93 -0.41 -0.04 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.40 3.19 8.80 -40.82 -0.36 2.83 16 37 H 0.39 3.31 8.60 -40.82 -0.35 2.96 16 38 H 0.39 4.68 8.62 -40.82 -0.35 4.33 16 39 H 0.08 1.71 7.58 -51.93 -0.39 1.31 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.09 2.54 6.06 -51.93 -0.31 2.22 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -38.15 378.46 -9.75 -47.90 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -8.03 Total: 5.80 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: -1.70 Total: 14.99 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -0.81 Total: -69.67 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.12 Total: -22.01 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.15 -9.75 -47.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619658056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.065 kcal (2) G-P(sol) polarization free energy of solvation -38.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds