Wall clock time and date at job start Fri Apr 10 2020 18:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.67412 * 2 1 4 4 C 1.53353 * 109.67470 * 239.46355 * 2 1 3 5 5 C 1.52910 * 108.67380 * 172.73751 * 4 2 1 6 6 N 1.45755 * 110.48977 * 50.75618 * 5 4 2 7 7 C 1.33354 * 124.10404 * 340.91993 * 6 5 4 8 8 O 1.21284 * 118.24334 * 182.22304 * 7 6 5 9 9 C 1.50174 * 123.51007 * 2.22575 * 7 6 5 10 10 H 1.09004 * 109.33293 * 102.50011 * 9 7 6 11 11 N 1.46498 * 109.40552 * 222.28590 * 9 7 6 12 12 C 1.34775 * 120.00166 * 275.43441 * 11 9 7 13 13 O 1.21584 * 120.00007 * 359.97438 * 12 11 9 14 14 N 1.34772 * 119.99965 * 179.97438 * 12 11 9 15 15 C 1.46507 * 120.00046 * 179.97438 * 14 12 11 16 16 C 1.53034 * 109.46060 * 204.99876 * 15 14 12 17 17 C 1.53197 * 109.31345 * 178.62822 * 16 15 14 18 18 N 1.46927 * 108.77557 * 54.63366 * 17 16 15 19 19 C 1.36930 * 120.62962 * 126.11563 * 18 17 16 20 20 H 1.07998 * 120.00455 * 331.86989 * 19 18 17 21 21 C 1.38815 * 119.99816 * 151.86413 * 19 18 17 22 22 N 1.31621 * 119.99984 * 343.18964 * 21 19 18 23 23 Si 1.86800 * 120.00122 * 163.18643 * 21 19 18 24 24 H 1.48503 * 109.47174 * 60.00002 * 23 21 19 25 25 H 1.48497 * 109.47073 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47370 * 300.00248 * 23 21 19 27 27 C 1.46931 * 118.73501 * 306.39518 * 18 17 16 28 28 C 1.53038 * 109.44930 * 84.93308 * 15 14 12 29 29 H 1.09003 * 109.47081 * 299.50247 * 1 2 3 30 30 H 1.09004 * 109.47256 * 59.49793 * 1 2 3 31 31 H 1.08999 * 109.47792 * 179.50038 * 1 2 3 32 32 H 1.09000 * 109.59940 * 292.49921 * 4 2 1 33 33 H 1.09002 * 109.59732 * 52.98051 * 4 2 1 34 34 H 1.09001 * 109.30384 * 171.06614 * 5 4 2 35 35 H 1.09005 * 109.30591 * 290.44363 * 5 4 2 36 36 H 0.97003 * 117.94808 * 160.92570 * 6 5 4 37 37 H 0.97003 * 119.99975 * 95.42618 * 11 9 7 38 38 H 0.96996 * 120.00547 * 359.97438 * 14 12 11 39 39 H 1.09007 * 109.45715 * 324.97322 * 15 14 12 40 40 H 1.09000 * 109.50237 * 58.67531 * 16 15 14 41 41 H 1.08996 * 109.52407 * 298.59190 * 16 15 14 42 42 H 1.08998 * 109.58233 * 294.85132 * 17 16 15 43 43 H 1.08991 * 109.58610 * 174.42064 * 17 16 15 44 44 H 0.97002 * 120.00123 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.57915 * 173.39752 * 27 18 17 46 46 H 1.09003 * 109.58727 * 293.81523 * 27 18 17 47 47 H 1.09000 * 109.50124 * 301.33753 * 28 15 14 48 48 H 1.09004 * 109.49546 * 61.39988 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0463 -0.7337 -1.2437 5 6 3.5642 -0.5644 -1.3171 6 7 4.1794 -0.9199 -0.0445 7 6 3.5209 -0.9790 1.1136 8 8 4.1473 -1.2470 2.1170 9 6 2.0453 -0.7315 1.2419 10 1 1.5267 -1.6851 1.3416 11 7 1.7905 0.0873 2.4297 12 6 1.6760 -0.4967 3.6389 13 8 1.7835 -1.7032 3.7440 14 7 1.4421 0.2567 4.7317 15 6 1.3170 -0.3782 6.0461 16 6 0.4754 0.5113 6.9639 17 6 0.3180 -0.1715 8.3262 18 7 1.6523 -0.4902 8.8524 19 6 2.0296 -0.0685 10.0993 20 1 1.6002 0.8294 10.5186 21 6 2.9639 -0.7951 10.8246 22 7 3.2410 -2.0359 10.4841 23 14 3.8279 -0.0119 12.2839 24 1 2.8206 0.3904 13.2981 25 1 4.7706 -0.9898 12.8841 26 1 4.5790 1.1860 11.8299 27 6 2.5763 -1.2648 8.0127 28 6 2.7083 -0.5697 6.6540 29 1 -0.3633 0.5061 0.8944 30 1 -0.3634 0.5216 -0.8855 31 1 -0.3634 -1.0276 -0.0090 32 1 1.7994 -1.7929 -1.1722 33 1 1.5872 -0.3082 -2.1361 34 1 3.9611 -1.2088 -2.1016 35 1 3.8001 0.4732 -1.5538 36 1 5.1271 -1.1264 -0.0396 37 1 1.7044 1.0499 2.3459 38 1 1.3566 1.2192 4.6480 39 1 0.8321 -1.3483 5.9361 40 1 -0.5075 0.6665 6.5190 41 1 0.9716 1.4730 7.0943 42 1 -0.2579 -1.0896 8.2103 43 1 -0.1953 0.4999 9.0144 44 1 3.8936 -2.5439 10.9911 45 1 3.5530 -1.3146 8.4941 46 1 2.1845 -2.2721 7.8713 47 1 3.3148 -1.1840 5.9884 48 1 3.1843 0.4019 6.7867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619658056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:28 Heat of formation + Delta-G solvation = -78.920540 kcal Electronic energy + Delta-G solvation = -28555.365310 eV Core-core repulsion = 24644.122648 eV Total energy + Delta-G solvation = -3911.242661 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92500 -40.67958 -39.03844 -37.93617 -36.23305 -35.80645 -34.14680 -33.46231 -31.74846 -31.21015 -29.92760 -28.37965 -26.79908 -24.59012 -23.90969 -23.58155 -22.70467 -21.71015 -21.07051 -20.57921 -19.22009 -18.63406 -18.36356 -17.65585 -17.51903 -16.87105 -16.31700 -15.96671 -15.73176 -15.50456 -15.37682 -15.34576 -15.15635 -14.86588 -14.67877 -14.36528 -14.11600 -14.02206 -13.70591 -13.21771 -13.19153 -13.00965 -12.67144 -12.64358 -12.56713 -12.30993 -12.13329 -12.08655 -11.87798 -11.82673 -11.72659 -11.53851 -11.44338 -11.26501 -11.15467 -10.57852 -10.22265 -10.03401 -9.76240 -8.71929 -7.87281 -5.34418 1.32063 1.46237 1.50073 1.56641 1.86416 2.12629 2.45409 2.51483 3.23530 3.30956 3.47548 3.61529 3.66521 3.80280 3.88154 3.94529 4.09484 4.27374 4.34514 4.46844 4.49988 4.53742 4.64467 4.66152 4.79614 4.86803 4.87066 4.98890 5.02767 5.04364 5.08960 5.11016 5.13782 5.26486 5.31300 5.38398 5.44791 5.46596 5.61228 5.63416 5.67215 5.85272 5.99547 6.31641 6.38129 7.11605 7.12924 7.23296 7.66052 7.83567 8.37453 9.20015 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.002611 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.673825 B =10720.977601 C =11408.559356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.103 0.897 4 C -0.128 4.128 5 C 0.101 3.899 6 N -0.713 5.713 7 C 0.490 3.510 8 O -0.593 6.593 9 C 0.161 3.839 10 H 0.094 0.906 11 N -0.715 5.715 12 C 0.703 3.297 13 O -0.628 6.628 14 N -0.725 5.725 15 C 0.183 3.817 16 C -0.118 4.118 17 C 0.141 3.859 18 N -0.609 5.609 19 C -0.262 4.262 20 H 0.077 0.923 21 C -0.058 4.058 22 N -0.941 5.941 23 Si 0.972 3.028 24 H -0.269 1.269 25 H -0.298 1.298 26 H -0.277 1.277 27 C 0.186 3.814 28 C -0.130 4.130 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.399 0.601 37 H 0.415 0.585 38 H 0.410 0.590 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.012 0.988 43 H 0.072 0.928 44 H 0.249 0.751 45 H 0.052 0.948 46 H -0.013 1.013 47 H 0.032 0.968 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 11.026 -31.476 33.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.121 0.879 4 C -0.166 4.166 5 C -0.021 4.021 6 N -0.365 5.365 7 C 0.275 3.725 8 O -0.473 6.473 9 C 0.051 3.949 10 H 0.112 0.888 11 N -0.372 5.372 12 C 0.403 3.597 13 O -0.508 6.508 14 N -0.380 5.380 15 C 0.077 3.923 16 C -0.158 4.158 17 C 0.015 3.985 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.094 0.906 21 C -0.252 4.252 22 N -0.587 5.587 23 Si 0.800 3.200 24 H -0.195 1.195 25 H -0.224 1.224 26 H -0.203 1.203 27 C 0.059 3.941 28 C -0.170 4.170 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.234 0.766 37 H 0.252 0.748 38 H 0.247 0.753 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.030 0.970 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.005 0.995 47 H 0.050 0.950 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.924 9.754 -30.788 32.835 hybrid contribution 1.355 0.121 1.175 1.798 sum -4.569 9.875 -29.614 31.549 Atomic orbital electron populations 1.21811 0.92620 1.02415 1.03236 1.21572 0.97814 1.00456 0.90910 0.87879 1.22026 0.94169 1.01735 0.98653 1.21776 0.93958 1.02776 0.83616 1.45653 1.13488 1.69303 1.08027 1.21260 0.91829 0.76331 0.83125 1.90832 1.69105 1.49551 1.37807 1.20776 0.90109 0.97498 0.86488 0.88839 1.44590 1.77494 1.10810 1.04334 1.16140 0.77111 0.85100 0.81373 1.90909 1.58877 1.15172 1.85804 1.45033 1.77132 1.10494 1.05312 1.20484 0.94902 0.96339 0.80550 1.22134 1.00067 0.98601 0.94984 1.21068 0.86405 0.97008 0.93973 1.44329 1.10919 1.63571 1.14437 1.19564 1.22189 1.04505 0.92982 0.90584 1.25946 1.02979 0.95225 1.01095 1.70221 1.36206 1.09061 1.43171 0.85271 0.78297 0.77261 0.79207 1.19480 1.22449 1.20305 1.20407 0.94700 0.90794 0.88177 1.22306 0.97571 1.00152 0.96999 0.92723 0.89407 0.93114 0.91243 0.85510 0.88047 0.89289 0.76563 0.74796 0.75346 0.92773 0.88607 0.90630 0.96950 0.90976 0.94227 0.92953 0.99459 0.94961 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.13 71.98 0.66 -0.39 16 2 C -0.09 -0.74 2.30 -10.65 -0.02 -0.77 16 3 H 0.10 0.53 8.10 -2.39 -0.02 0.51 16 4 C -0.13 -0.53 5.32 30.68 0.16 -0.37 16 5 C 0.10 0.49 7.17 86.49 0.62 1.11 16 6 N -0.71 -11.09 5.45 -467.32 -2.55 -13.63 16 7 C 0.49 12.69 7.44 87.71 0.65 13.34 16 8 O -0.59 -23.66 16.53 -1.33 -0.02 -23.68 16 9 C 0.16 3.34 2.07 44.10 0.09 3.43 16 10 H 0.09 2.44 7.54 -2.38 -0.02 2.42 16 11 N -0.72 -16.20 4.71 -462.10 -2.18 -18.38 16 12 C 0.70 23.72 7.95 179.06 1.42 25.15 16 13 O -0.63 -28.60 15.21 -2.27 -0.03 -28.63 16 14 N -0.72 -21.72 5.08 -457.69 -2.33 -24.05 16 15 C 0.18 6.92 2.42 45.01 0.11 7.03 16 16 C -0.12 -3.85 5.55 30.67 0.17 -3.68 16 17 C 0.14 5.92 6.52 86.36 0.56 6.49 16 18 N -0.61 -32.30 2.99 -699.10 -2.09 -34.39 16 19 C -0.26 -14.89 9.58 84.04 0.81 -14.08 16 20 H 0.08 4.06 7.88 -2.91 -0.02 4.04 16 21 C -0.06 -3.37 4.92 84.86 0.42 -2.95 16 22 N -0.94 -59.51 11.20 21.65 0.24 -59.27 16 23 Si 0.97 46.58 29.59 68.60 2.03 48.61 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 C 0.19 10.22 5.31 86.36 0.46 10.68 16 28 C -0.13 -5.97 5.65 30.67 0.17 -5.80 16 29 H 0.05 0.51 7.97 -2.39 -0.02 0.49 16 30 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.46 8.12 -2.39 -0.02 0.44 16 33 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.09 0.12 8.14 -2.38 -0.02 0.10 16 36 H 0.40 6.15 8.80 -92.71 -0.82 5.33 16 37 H 0.41 5.99 8.60 -92.71 -0.80 5.19 16 38 H 0.41 8.75 8.62 -92.71 -0.80 7.95 16 39 H 0.05 2.37 7.58 -2.38 -0.02 2.36 16 40 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.07 2.81 7.93 -2.39 -0.02 2.79 16 44 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.05 3.22 6.06 -2.39 -0.01 3.21 16 46 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 47 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -91.19 378.46 -2.07 -93.26 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -1.43 Total: 20.98 kcal Atomic # 6 Polarization: 32.91 SS G_CDS: 6.28 Total: 39.19 kcal Atomic # 7 Polarization: -140.83 SS G_CDS: -8.90 Total: -149.72 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.06 Total: -52.31 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -91.19 -2.07 -93.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619658056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.335 kcal (2) G-P(sol) polarization free energy of solvation -91.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds