Wall clock time and date at job start Fri Apr 10 2020 18:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.67526 * 2 1 4 4 C 1.53350 * 109.66794 * 239.50026 * 2 1 3 5 5 C 1.52920 * 108.67131 * 172.70071 * 4 2 1 6 6 N 1.45752 * 110.49025 * 50.75464 * 5 4 2 7 7 C 1.33355 * 124.10548 * 340.90327 * 6 5 4 8 8 O 1.21277 * 118.25050 * 182.24670 * 7 6 5 9 9 C 1.50175 * 123.50786 * 2.52465 * 7 6 5 10 10 H 1.09002 * 109.40702 * 222.00938 * 9 7 6 11 11 N 1.46504 * 109.40486 * 102.26415 * 9 7 6 12 12 C 1.34778 * 119.99722 * 84.99668 * 11 9 7 13 13 O 1.21587 * 120.00084 * 0.02562 * 12 11 9 14 14 N 1.34780 * 119.99927 * 180.02562 * 12 11 9 15 15 C 1.46494 * 119.99920 * 180.02562 * 14 12 11 16 16 C 1.53043 * 109.46027 * 275.02728 * 15 14 12 17 17 C 1.53190 * 109.31224 * 178.60511 * 16 15 14 18 18 N 1.46917 * 108.76904 * 54.65413 * 17 16 15 19 19 C 1.36941 * 120.63218 * 126.40367 * 18 17 16 20 20 H 1.07994 * 119.99955 * 207.65746 * 19 18 17 21 21 C 1.38812 * 119.99553 * 27.66247 * 19 18 17 22 22 N 1.31617 * 120.00507 * 17.37769 * 21 19 18 23 23 Si 1.86806 * 119.99489 * 197.37687 * 21 19 18 24 24 H 1.48499 * 109.47345 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47225 * 119.99965 * 23 21 19 26 26 H 1.48503 * 109.46800 * 240.00184 * 23 21 19 27 27 C 1.46934 * 118.73963 * 306.38463 * 18 17 16 28 28 C 1.53039 * 109.45853 * 154.97305 * 15 14 12 29 29 H 1.08994 * 109.47343 * 180.50049 * 1 2 3 30 30 H 1.09006 * 109.46708 * 300.49594 * 1 2 3 31 31 H 1.09002 * 109.47117 * 60.49604 * 1 2 3 32 32 H 1.08998 * 109.60280 * 52.94786 * 4 2 1 33 33 H 1.08994 * 109.73924 * 292.53735 * 4 2 1 34 34 H 1.09000 * 109.30444 * 290.44473 * 5 4 2 35 35 H 1.08999 * 109.30574 * 171.06610 * 5 4 2 36 36 H 0.97000 * 117.95374 * 160.92390 * 6 5 4 37 37 H 0.96996 * 119.99647 * 265.00583 * 11 9 7 38 38 H 0.96996 * 119.99442 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.46137 * 34.99760 * 15 14 12 40 40 H 1.09004 * 109.49703 * 298.56983 * 16 15 14 41 41 H 1.08999 * 109.49851 * 58.66460 * 16 15 14 42 42 H 1.09007 * 109.59612 * 294.86368 * 17 16 15 43 43 H 1.09003 * 109.58227 * 174.43862 * 17 16 15 44 44 H 0.96998 * 120.00255 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.58177 * 293.82257 * 27 18 17 46 46 H 1.09003 * 109.58683 * 173.39378 * 27 18 17 47 47 H 1.08994 * 109.49951 * 301.33359 * 28 15 14 48 48 H 1.09000 * 109.49587 * 61.39915 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0462 -0.7329 -1.2442 5 6 3.5641 -0.5628 -1.3181 6 7 4.1799 -0.9186 -0.0459 7 6 3.5220 -0.9781 1.1125 8 8 4.1489 -1.2458 2.1156 9 6 2.0452 -0.7374 1.2406 10 1 1.8525 -0.1311 2.1257 11 7 1.3523 -2.0215 1.3721 12 6 1.2326 -2.6017 2.5827 13 8 1.6993 -2.0592 3.5657 14 7 0.5956 -3.7833 2.7036 15 6 0.4651 -4.4137 4.0195 16 6 1.7251 -5.2279 4.3221 17 6 1.5999 -5.8571 5.7132 18 7 0.3529 -6.6318 5.7711 19 6 0.3653 -7.9465 6.1539 20 1 -0.3961 -8.6215 5.7921 21 6 1.3567 -8.4115 7.0071 22 7 2.0685 -7.5602 7.7148 23 14 1.6803 -10.2457 7.1508 24 1 0.7512 -10.9838 6.2579 25 1 3.0820 -10.5336 6.7542 26 1 1.4644 -10.6778 8.5551 27 6 -0.9080 -5.9689 5.4108 28 6 -0.7545 -5.3382 4.0232 29 1 -0.3634 -1.0276 0.0090 30 1 -0.3633 0.5216 0.8856 31 1 -0.3633 0.5061 -0.8944 32 1 1.5866 -0.3073 -2.1363 33 1 1.7998 -1.7924 -1.1760 34 1 3.7993 0.4749 -1.5544 35 1 3.9611 -1.2066 -2.1030 36 1 5.1277 -1.1247 -0.0414 37 1 0.9798 -2.4540 0.5879 38 1 0.2237 -4.2162 1.9194 39 1 0.3392 -3.6434 4.7804 40 1 1.8381 -6.0143 3.5757 41 1 2.5962 -4.5733 4.2962 42 1 1.5777 -5.0719 6.4690 43 1 2.4486 -6.5168 5.8935 44 1 2.7615 -7.8852 8.3107 45 1 -1.1346 -5.1929 6.1419 46 1 -1.7140 -6.7025 5.3917 47 1 -1.6485 -4.7621 3.7846 48 1 -0.6182 -6.1232 3.2793 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619658057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:31 Heat of formation + Delta-G solvation = -45.624245 kcal Electronic energy + Delta-G solvation = -28699.863637 eV Core-core repulsion = 24790.064811 eV Total energy + Delta-G solvation = -3909.798826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07757 -39.43272 -37.49387 -37.09459 -35.11562 -34.24867 -32.89527 -31.88489 -30.00904 -29.66310 -29.15717 -27.63673 -24.91340 -23.97884 -22.23132 -22.08969 -21.79791 -20.76011 -19.47910 -19.23986 -18.28671 -17.34679 -16.84480 -16.63700 -16.28389 -15.53942 -15.01054 -14.96416 -14.64990 -14.55971 -14.01025 -13.87702 -13.68090 -13.60390 -13.41286 -13.08602 -12.93169 -12.85521 -12.47968 -12.33172 -12.25415 -11.70228 -11.44094 -11.36325 -11.11503 -11.05260 -10.86706 -10.68991 -10.34204 -10.26779 -10.15573 -10.01497 -9.88044 -9.68380 -9.46783 -9.31241 -9.05173 -8.56042 -8.32650 -6.62616 -5.72273 -3.15021 2.22231 2.95866 3.08765 3.41344 3.48603 3.50281 3.50854 4.08139 4.16123 4.18176 4.33132 4.40632 4.54417 4.77081 4.88761 4.98345 5.17058 5.25557 5.26636 5.34207 5.38117 5.46631 5.51721 5.52880 5.66477 5.73582 5.81329 5.91373 6.16988 6.30453 6.31808 6.43883 6.54443 6.54889 6.66339 6.72129 6.83627 6.98546 7.01306 7.08156 7.16676 7.48150 7.77402 7.85788 8.08415 8.18746 8.51076 8.85190 9.26986 9.90716 10.47452 11.36076 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.002711 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.997624 B =10325.747196 C =10880.272121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 H 0.093 0.907 4 C -0.135 4.135 5 C 0.111 3.889 6 N -0.725 5.725 7 C 0.499 3.501 8 O -0.519 6.519 9 C 0.163 3.837 10 H 0.119 0.881 11 N -0.736 5.736 12 C 0.699 3.301 13 O -0.566 6.566 14 N -0.739 5.739 15 C 0.170 3.830 16 C -0.147 4.147 17 C 0.174 3.826 18 N -0.593 5.593 19 C -0.254 4.254 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.149 3.851 28 C -0.138 4.138 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.398 0.602 37 H 0.394 0.606 38 H 0.388 0.612 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.021 0.979 43 H 0.089 0.911 44 H 0.253 0.747 45 H 0.020 0.980 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.887 16.379 -24.223 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.112 0.888 4 C -0.172 4.172 5 C -0.014 4.014 6 N -0.380 5.380 7 C 0.283 3.717 8 O -0.392 6.392 9 C 0.054 3.946 10 H 0.137 0.863 11 N -0.396 5.396 12 C 0.399 3.601 13 O -0.440 6.440 14 N -0.392 5.392 15 C 0.066 3.934 16 C -0.187 4.187 17 C 0.048 3.952 18 N -0.316 5.316 19 C -0.383 4.383 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.022 3.978 28 C -0.178 4.178 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.233 0.767 37 H 0.229 0.771 38 H 0.221 0.779 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.250 16.736 -22.558 28.179 hybrid contribution 0.390 -1.414 -0.888 1.715 sum -1.860 15.322 -23.446 28.070 Atomic orbital electron populations 1.21768 0.93342 1.02595 1.02414 1.21669 0.97509 1.00015 0.93182 0.88843 1.21991 0.94621 1.01713 0.98918 1.21351 0.93690 1.00833 0.85520 1.45574 1.13415 1.71345 1.07627 1.20761 0.90923 0.77200 0.82855 1.90863 1.67636 1.45588 1.35088 1.20704 0.87136 0.86063 1.00722 0.86318 1.44956 1.62217 1.23459 1.08929 1.16010 0.79431 0.81334 0.83307 1.90998 1.52170 1.64531 1.36340 1.45490 1.60906 1.21297 1.11537 1.20905 0.96042 0.94244 0.82197 1.22572 0.96328 0.98318 1.01518 1.20761 0.90665 0.94102 0.89702 1.44131 1.00435 1.09105 1.77915 1.19206 1.12575 0.84521 1.22014 0.91631 1.25058 1.00813 0.97603 0.96240 1.70052 1.24717 1.32742 1.26880 0.86246 0.77839 0.85468 0.77338 1.20306 1.21601 1.21756 1.20835 0.90296 0.95263 0.91444 1.22340 0.95838 0.98157 1.01427 0.92154 0.91884 0.92034 0.89280 0.90939 0.91576 0.90553 0.76695 0.77087 0.77941 0.90045 0.92955 0.92678 0.96103 0.89317 0.93639 0.96179 0.92394 0.92708 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.94 37.16 0.33 -0.39 16 2 C -0.10 -0.59 2.60 -90.31 -0.23 -0.83 16 3 H 0.09 0.46 8.13 -51.93 -0.42 0.03 16 4 C -0.13 -0.51 5.27 -26.59 -0.14 -0.65 16 5 C 0.11 0.47 7.17 -4.49 -0.03 0.44 16 6 N -0.72 -6.10 5.45 -61.39 -0.33 -6.44 16 7 C 0.50 6.39 7.24 -11.87 -0.09 6.31 16 8 O -0.52 -9.81 17.40 5.56 0.10 -9.71 16 9 C 0.16 1.73 2.27 -69.21 -0.16 1.57 16 10 H 0.12 1.54 7.56 -51.93 -0.39 1.15 16 11 N -0.74 -8.11 4.19 -59.94 -0.25 -8.36 16 12 C 0.70 11.25 8.48 -86.91 -0.74 10.51 16 13 O -0.57 -12.07 15.28 5.29 0.08 -11.99 16 14 N -0.74 -10.92 5.08 -58.64 -0.30 -11.22 16 15 C 0.17 3.13 2.42 -67.89 -0.16 2.96 16 16 C -0.15 -3.17 5.65 -26.61 -0.15 -3.32 16 17 C 0.17 4.46 5.31 -3.72 -0.02 4.44 16 18 N -0.59 -15.26 2.99 -172.32 -0.52 -15.78 16 19 C -0.25 -7.08 9.59 -15.06 -0.14 -7.23 16 20 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -27.06 11.19 55.49 0.62 -26.44 16 23 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C 0.15 3.14 6.52 -3.70 -0.02 3.12 16 28 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 29 H 0.06 0.31 6.78 -51.93 -0.35 -0.04 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.30 6.95 -51.93 -0.36 -0.06 16 34 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.40 3.22 8.80 -40.82 -0.36 2.86 16 37 H 0.39 3.02 6.61 -40.82 -0.27 2.75 16 38 H 0.39 4.39 8.62 -40.82 -0.35 4.03 16 39 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 2.53 6.04 -51.93 -0.31 2.22 16 44 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -37.78 375.15 -9.60 -47.38 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -7.83 Total: 5.39 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: -1.79 Total: 14.41 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -0.78 Total: -68.23 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.18 Total: -21.70 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.78 -9.60 -47.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619658057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.755 kcal (2) G-P(sol) polarization free energy of solvation -37.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds