Wall clock time and date at job start Fri Apr 10 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.67526 * 2 1 4 4 C 1.53350 * 109.66794 * 239.50026 * 2 1 3 5 5 C 1.52920 * 108.67131 * 172.70071 * 4 2 1 6 6 N 1.45752 * 110.49025 * 50.75464 * 5 4 2 7 7 C 1.33355 * 124.10548 * 340.90327 * 6 5 4 8 8 O 1.21277 * 118.25050 * 182.24670 * 7 6 5 9 9 C 1.50175 * 123.50786 * 2.52465 * 7 6 5 10 10 H 1.09002 * 109.40702 * 222.00938 * 9 7 6 11 11 N 1.46504 * 109.40486 * 102.26415 * 9 7 6 12 12 C 1.34778 * 119.99722 * 84.99668 * 11 9 7 13 13 O 1.21587 * 120.00084 * 0.02562 * 12 11 9 14 14 N 1.34780 * 119.99927 * 180.02562 * 12 11 9 15 15 C 1.46494 * 119.99920 * 180.02562 * 14 12 11 16 16 C 1.53043 * 109.46027 * 275.02728 * 15 14 12 17 17 C 1.53190 * 109.31224 * 178.60511 * 16 15 14 18 18 N 1.46917 * 108.76904 * 54.65413 * 17 16 15 19 19 C 1.36941 * 120.63218 * 126.40367 * 18 17 16 20 20 H 1.07994 * 119.99955 * 207.65746 * 19 18 17 21 21 C 1.38812 * 119.99553 * 27.66247 * 19 18 17 22 22 N 1.31617 * 120.00507 * 17.37769 * 21 19 18 23 23 Si 1.86806 * 119.99489 * 197.37687 * 21 19 18 24 24 H 1.48499 * 109.47345 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47225 * 119.99965 * 23 21 19 26 26 H 1.48503 * 109.46800 * 240.00184 * 23 21 19 27 27 C 1.46934 * 118.73963 * 306.38463 * 18 17 16 28 28 C 1.53039 * 109.45853 * 154.97305 * 15 14 12 29 29 H 1.08994 * 109.47343 * 180.50049 * 1 2 3 30 30 H 1.09006 * 109.46708 * 300.49594 * 1 2 3 31 31 H 1.09002 * 109.47117 * 60.49604 * 1 2 3 32 32 H 1.08998 * 109.60280 * 52.94786 * 4 2 1 33 33 H 1.08994 * 109.73924 * 292.53735 * 4 2 1 34 34 H 1.09000 * 109.30444 * 290.44473 * 5 4 2 35 35 H 1.08999 * 109.30574 * 171.06610 * 5 4 2 36 36 H 0.97000 * 117.95374 * 160.92390 * 6 5 4 37 37 H 0.96996 * 119.99647 * 265.00583 * 11 9 7 38 38 H 0.96996 * 119.99442 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.46137 * 34.99760 * 15 14 12 40 40 H 1.09004 * 109.49703 * 298.56983 * 16 15 14 41 41 H 1.08999 * 109.49851 * 58.66460 * 16 15 14 42 42 H 1.09007 * 109.59612 * 294.86368 * 17 16 15 43 43 H 1.09003 * 109.58227 * 174.43862 * 17 16 15 44 44 H 0.96998 * 120.00255 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.58177 * 293.82257 * 27 18 17 46 46 H 1.09003 * 109.58683 * 173.39378 * 27 18 17 47 47 H 1.08994 * 109.49951 * 301.33359 * 28 15 14 48 48 H 1.09000 * 109.49587 * 61.39915 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0462 -0.7329 -1.2442 5 6 3.5641 -0.5628 -1.3181 6 7 4.1799 -0.9186 -0.0459 7 6 3.5220 -0.9781 1.1125 8 8 4.1489 -1.2458 2.1156 9 6 2.0452 -0.7374 1.2406 10 1 1.8525 -0.1311 2.1257 11 7 1.3523 -2.0215 1.3721 12 6 1.2326 -2.6017 2.5827 13 8 1.6993 -2.0592 3.5657 14 7 0.5956 -3.7833 2.7036 15 6 0.4651 -4.4137 4.0195 16 6 1.7251 -5.2279 4.3221 17 6 1.5999 -5.8571 5.7132 18 7 0.3529 -6.6318 5.7711 19 6 0.3653 -7.9465 6.1539 20 1 -0.3961 -8.6215 5.7921 21 6 1.3567 -8.4115 7.0071 22 7 2.0685 -7.5602 7.7148 23 14 1.6803 -10.2457 7.1508 24 1 0.7512 -10.9838 6.2579 25 1 3.0820 -10.5336 6.7542 26 1 1.4644 -10.6778 8.5551 27 6 -0.9080 -5.9689 5.4108 28 6 -0.7545 -5.3382 4.0232 29 1 -0.3634 -1.0276 0.0090 30 1 -0.3633 0.5216 0.8856 31 1 -0.3633 0.5061 -0.8944 32 1 1.5866 -0.3073 -2.1363 33 1 1.7998 -1.7924 -1.1760 34 1 3.7993 0.4749 -1.5544 35 1 3.9611 -1.2066 -2.1030 36 1 5.1277 -1.1247 -0.0414 37 1 0.9798 -2.4540 0.5879 38 1 0.2237 -4.2162 1.9194 39 1 0.3392 -3.6434 4.7804 40 1 1.8381 -6.0143 3.5757 41 1 2.5962 -4.5733 4.2962 42 1 1.5777 -5.0719 6.4690 43 1 2.4486 -6.5168 5.8935 44 1 2.7615 -7.8852 8.3107 45 1 -1.1346 -5.1929 6.1419 46 1 -1.7140 -6.7025 5.3917 47 1 -1.6485 -4.7621 3.7846 48 1 -0.6182 -6.1232 3.2793 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619658057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:30 Heat of formation + Delta-G solvation = -76.242122 kcal Electronic energy + Delta-G solvation = -28701.191328 eV Core-core repulsion = 24790.064811 eV Total energy + Delta-G solvation = -3911.126517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01626 -40.69719 -39.06586 -38.04991 -36.16495 -35.80029 -34.13040 -33.39011 -31.74711 -31.20710 -29.99808 -28.45469 -26.80875 -24.60100 -23.93161 -23.78007 -22.44522 -22.10640 -21.13270 -20.03415 -19.56978 -18.69354 -18.14709 -17.65834 -17.40022 -16.85044 -16.35502 -16.03834 -15.86703 -15.79150 -15.36695 -15.34006 -15.08736 -14.81454 -14.56032 -14.34185 -14.13330 -14.03844 -13.80796 -13.33047 -13.18982 -13.04391 -12.76124 -12.66486 -12.57899 -12.19703 -12.12990 -12.03045 -11.86860 -11.81147 -11.63696 -11.54403 -11.44940 -11.28095 -11.20056 -10.59900 -10.24574 -10.04936 -9.78661 -8.73261 -7.87444 -5.33976 1.18581 1.46512 1.47911 1.59148 1.95175 2.08081 2.39941 2.51326 3.24719 3.31873 3.46555 3.61929 3.65986 3.75300 3.87290 3.88841 4.08872 4.34101 4.41974 4.44773 4.46657 4.54742 4.58327 4.65659 4.79505 4.85196 4.87116 4.99230 5.02722 5.04697 5.08603 5.12933 5.13971 5.27032 5.31124 5.36441 5.44760 5.45180 5.59411 5.63298 5.67577 5.82037 5.96667 6.30613 6.37720 7.09050 7.12117 7.20779 7.62264 7.83480 8.36844 9.19917 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.002711 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.997624 B =10325.747196 C =10880.272121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.105 0.895 4 C -0.131 4.131 5 C 0.100 3.900 6 N -0.710 5.710 7 C 0.493 3.507 8 O -0.596 6.596 9 C 0.161 3.839 10 H 0.086 0.914 11 N -0.712 5.712 12 C 0.695 3.305 13 O -0.623 6.623 14 N -0.722 5.722 15 C 0.182 3.818 16 C -0.130 4.130 17 C 0.185 3.815 18 N -0.609 5.609 19 C -0.259 4.259 20 H 0.078 0.922 21 C -0.059 4.059 22 N -0.940 5.940 23 Si 0.971 3.029 24 H -0.259 1.259 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.141 3.859 28 C -0.118 4.118 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.399 0.601 37 H 0.415 0.585 38 H 0.411 0.589 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.032 0.968 42 H -0.014 1.014 43 H 0.053 0.947 44 H 0.248 0.752 45 H 0.011 0.989 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.028 16.248 -28.985 33.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.123 0.877 4 C -0.168 4.168 5 C -0.022 4.022 6 N -0.361 5.361 7 C 0.278 3.722 8 O -0.475 6.475 9 C 0.052 3.948 10 H 0.104 0.896 11 N -0.372 5.372 12 C 0.395 3.605 13 O -0.502 6.502 14 N -0.377 5.377 15 C 0.076 3.924 16 C -0.170 4.170 17 C 0.058 3.942 18 N -0.333 5.333 19 C -0.389 4.389 20 H 0.095 0.905 21 C -0.253 4.253 22 N -0.587 5.587 23 Si 0.799 3.201 24 H -0.183 1.183 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.015 3.985 28 C -0.157 4.157 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.234 0.766 37 H 0.254 0.746 38 H 0.248 0.752 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.004 0.996 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.029 0.971 46 H 0.090 0.910 47 H 0.114 0.886 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.460 16.616 -27.497 32.436 hybrid contribution 1.064 -1.267 0.525 1.736 sum -3.396 15.350 -26.972 31.219 Atomic orbital electron populations 1.21773 0.92422 1.02836 1.02907 1.21676 0.98099 1.00047 0.91331 0.87667 1.22063 0.94094 1.01707 0.98979 1.21784 0.94139 1.02748 0.83529 1.45634 1.13532 1.68952 1.08020 1.21160 0.91703 0.76387 0.82985 1.90832 1.69232 1.49523 1.37961 1.20785 0.86201 0.85580 1.02253 0.89620 1.44642 1.61192 1.23395 1.07936 1.16260 0.78906 0.81389 0.83979 1.90976 1.54369 1.66036 1.38834 1.45024 1.60772 1.20892 1.11035 1.20494 0.95073 0.93404 0.83379 1.22308 0.97454 0.98224 0.99042 1.20418 0.90080 0.92500 0.91194 1.44370 1.01822 1.08951 1.78121 1.19638 1.12420 0.85734 1.21137 0.90475 1.25925 1.01058 1.01979 0.96371 1.70235 1.25544 1.34823 1.28084 0.85153 0.77479 0.80289 0.77202 1.18277 1.22116 1.22041 1.21074 0.88583 0.95335 0.93528 1.22127 0.96416 0.98256 0.98918 0.91988 0.93572 0.89433 0.85694 0.90909 0.89361 0.88053 0.76592 0.74585 0.75196 0.92890 0.92082 0.94934 0.99615 0.92863 0.94268 0.97103 0.90965 0.88626 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.94 71.98 0.64 -0.31 16 2 C -0.09 -0.78 2.60 -10.60 -0.03 -0.81 16 3 H 0.11 0.71 8.13 -2.39 -0.02 0.69 16 4 C -0.13 -0.39 5.27 30.69 0.16 -0.23 16 5 C 0.10 0.46 7.17 86.49 0.62 1.08 16 6 N -0.71 -10.98 5.45 -467.32 -2.55 -13.53 16 7 C 0.49 12.88 7.24 87.71 0.64 13.51 16 8 O -0.60 -24.19 17.40 -3.02 -0.05 -24.24 16 9 C 0.16 3.38 2.27 44.16 0.10 3.48 16 10 H 0.09 2.39 7.56 -2.39 -0.02 2.37 16 11 N -0.71 -14.96 4.19 -461.81 -1.94 -16.90 16 12 C 0.69 22.51 8.48 179.05 1.52 24.03 16 13 O -0.62 -28.18 15.28 -3.99 -0.06 -28.24 16 14 N -0.72 -20.37 5.08 -457.68 -2.33 -22.69 16 15 C 0.18 6.67 2.42 45.02 0.11 6.78 16 16 C -0.13 -5.78 5.65 30.67 0.17 -5.61 16 17 C 0.18 10.01 5.31 86.36 0.46 10.46 16 18 N -0.61 -31.82 2.99 -699.09 -2.09 -33.91 16 19 C -0.26 -14.52 9.59 84.03 0.81 -13.72 16 20 H 0.08 4.08 7.89 -2.91 -0.02 4.06 16 21 C -0.06 -3.39 4.91 84.86 0.42 -2.98 16 22 N -0.94 -59.09 11.19 21.65 0.24 -58.85 16 23 Si 0.97 46.15 29.59 68.60 2.03 48.18 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 27 C 0.14 5.79 6.52 86.36 0.56 6.35 16 28 C -0.12 -3.70 5.55 30.67 0.17 -3.53 16 29 H 0.06 0.40 6.78 -2.39 -0.02 0.39 16 30 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.07 0.26 6.95 -2.39 -0.02 0.25 16 34 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.40 6.16 8.80 -92.71 -0.82 5.35 16 37 H 0.42 5.16 6.61 -92.71 -0.61 4.55 16 38 H 0.41 7.89 8.62 -92.71 -0.80 7.09 16 39 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 40 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 42 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 43 H 0.05 3.24 6.04 -2.39 -0.01 3.22 16 44 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 47 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -91.34 375.15 -1.63 -92.97 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -1.24 Total: 18.70 kcal Atomic # 6 Polarization: 32.17 SS G_CDS: 6.35 Total: 38.52 kcal Atomic # 7 Polarization: -137.22 SS G_CDS: -8.66 Total: -145.88 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.11 Total: -52.48 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -91.34 -1.63 -92.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619658057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.728 kcal (2) G-P(sol) polarization free energy of solvation -91.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds