Wall clock time and date at job start Fri Apr 10 2020 18:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86801 * 119.99584 * 2 1 4 4 H 1.48504 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47102 * 299.99693 * 3 2 1 6 6 H 1.48496 * 109.46936 * 59.99743 * 3 2 1 7 7 C 1.38950 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99657 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99863 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99923 * 0.02562 * 10 9 7 12 12 C 1.50692 * 119.99859 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47041 * 180.02562 * 12 10 9 14 14 C 1.35370 * 122.58957 * 85.00337 * 13 12 10 15 15 O 1.21584 * 116.77871 * 0.02562 * 14 13 12 16 16 N 1.32364 * 126.43756 * 180.02562 * 14 13 12 17 17 C 1.38676 * 130.51102 * 359.97436 * 16 14 13 18 18 C 1.39025 * 121.35161 * 180.02562 * 17 16 14 19 19 C 1.38076 * 119.88787 * 179.97438 * 18 17 16 20 20 C 1.38299 * 120.92450 * 359.94474 * 19 18 17 21 21 C 1.38829 * 119.71727 * 0.07868 * 20 19 18 22 22 C 1.36541 * 119.13561 * 359.94986 * 21 20 19 23 23 S 1.68030 * 122.59278 * 265.02278 * 13 12 10 24 24 O 1.42097 * 105.54149 * 294.65605 * 23 13 12 25 25 O 1.42099 * 105.53789 * 65.43833 * 23 13 12 26 26 H 0.96992 * 120.00304 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99874 * 0.02562 * 9 7 2 28 28 H 1.09010 * 109.46893 * 60.00401 * 12 10 9 29 29 H 1.08998 * 109.47756 * 300.00700 * 12 10 9 30 30 H 0.97005 * 114.74081 * 179.97438 * 16 14 13 31 31 H 1.07996 * 120.05584 * 359.69795 * 18 17 16 32 32 H 1.08003 * 119.53697 * 179.97438 * 19 18 17 33 33 H 1.07998 * 120.14249 * 180.02562 * 20 19 18 34 34 H 1.07995 * 120.42916 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5579 0.0005 11 8 3.2104 -3.5578 0.0010 12 6 1.2440 -4.8629 0.0011 13 7 2.1961 -5.9764 0.0016 14 6 2.7454 -6.4655 1.1381 15 8 2.4117 -5.9353 2.1801 16 7 3.6099 -7.4639 1.2270 17 6 4.1745 -8.2573 0.2396 18 6 5.0755 -9.2690 0.5518 19 6 5.6190 -10.0413 -0.4556 20 6 5.2794 -9.8252 -1.7787 21 6 4.3811 -8.8175 -2.1029 22 6 3.8469 -8.0562 -1.1032 23 16 2.6909 -6.7448 -1.4084 24 8 1.5280 -7.3761 -1.9262 25 8 3.4141 -5.7658 -2.1417 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3907 -0.0002 28 1 0.6170 -4.9209 -0.8887 29 1 0.6176 -4.9205 0.8912 30 1 3.8950 -7.6750 2.1299 31 1 5.3532 -9.4476 1.5800 32 1 6.3187 -10.8254 -0.2067 33 1 5.7118 -10.4370 -2.5565 34 1 4.1082 -8.6385 -3.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749681396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:46 Heat of formation + Delta-G solvation = -73.726412 kcal Electronic energy + Delta-G solvation = -25487.592222 eV Core-core repulsion = 21514.109720 eV Total energy + Delta-G solvation = -3973.482502 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.061 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.40086 -39.62962 -38.13060 -37.19631 -36.09367 -35.66583 -35.02571 -33.81902 -31.86523 -31.28078 -30.17131 -28.26918 -24.95750 -23.94054 -23.64717 -21.85018 -20.18751 -19.82762 -18.77258 -18.35665 -17.89235 -17.10953 -17.01472 -16.10197 -15.77392 -15.66046 -15.30271 -15.23481 -14.80130 -14.53269 -14.50079 -14.03224 -13.81087 -13.71400 -12.95664 -12.61217 -12.47318 -12.21960 -12.15720 -12.02179 -11.61581 -11.49103 -11.38001 -11.04587 -10.96392 -10.65664 -10.42152 -10.32260 -10.20789 -9.90548 -9.52816 -8.69892 -8.39194 -7.98325 -6.41611 -3.82177 -0.31411 0.35730 0.73217 1.72908 2.52684 2.76584 3.09829 3.12711 3.17777 3.29123 3.37104 3.79080 3.98091 4.12993 4.21384 4.41763 4.61012 4.69824 4.77738 4.88285 5.02513 5.19830 5.23354 5.30604 5.47811 5.54308 5.65421 5.76668 5.87805 6.16448 6.21865 6.27253 6.85897 7.56891 7.63236 8.02880 8.57251 9.16284 9.48735 9.98743 10.75850 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.024885 B = 0.003573 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.891623 B = 7834.449243 C = 8007.339596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.297 4.297 8 H 0.105 0.895 9 N -0.554 5.554 10 C 0.422 3.578 11 O -0.573 6.573 12 C 0.125 3.875 13 N -0.893 5.893 14 C 0.703 3.297 15 O -0.519 6.519 16 N -0.665 5.665 17 C 0.231 3.769 18 C -0.164 4.164 19 C -0.034 4.034 20 C -0.159 4.159 21 C 0.029 3.971 22 C -0.684 4.684 23 S 2.640 3.360 24 O -0.934 6.934 25 O -0.903 6.903 26 H 0.272 0.728 27 H 0.394 0.606 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.433 0.567 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 -22.235 -0.844 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.427 4.427 8 H 0.123 0.877 9 N -0.191 5.191 10 C 0.206 3.794 11 O -0.457 6.457 12 C -0.002 4.002 13 N -0.741 5.741 14 C 0.401 3.599 15 O -0.389 6.389 16 N -0.311 5.311 17 C 0.131 3.869 18 C -0.186 4.186 19 C -0.053 4.053 20 C -0.179 4.179 21 C 0.009 3.991 22 C -0.775 4.775 23 S 2.732 3.268 24 O -0.923 6.923 25 O -0.892 6.892 26 H 0.082 0.918 27 H 0.228 0.772 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.273 0.727 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.663 -21.317 -1.161 22.365 hybrid contribution 0.356 0.363 0.748 0.904 sum 7.019 -20.955 -0.413 22.103 Atomic orbital electron populations 1.69617 1.05927 1.28210 1.50215 1.25286 0.95676 0.99770 0.97119 0.85766 0.79736 0.80940 0.77700 1.19185 1.20667 1.20725 1.19779 0.93504 0.81914 1.47482 0.87678 1.41750 1.09272 1.04326 1.63721 1.19873 0.88768 0.84844 0.85927 1.90565 1.13270 1.86633 1.55191 1.21332 0.89159 0.83568 1.06105 1.55733 1.53423 1.43323 1.21590 1.15106 0.79215 0.79628 0.85901 1.91033 1.59946 1.55999 1.31964 1.42432 1.43757 1.32362 1.12562 1.17395 0.92400 0.90535 0.86592 1.20799 0.99759 0.96977 1.01093 1.21224 0.95460 0.96311 0.92304 1.21386 1.00015 0.99563 0.96980 1.20233 0.90860 0.90400 0.97624 1.29713 1.24958 1.24019 0.98821 1.04304 0.75037 0.74443 0.73005 1.93606 1.48320 1.76717 1.73699 1.93689 1.72443 1.57913 1.65159 0.91804 0.77207 0.86952 0.86017 0.72704 0.84020 0.84344 0.84168 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 3 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 8 H 0.11 3.16 7.16 -52.49 -0.38 2.79 16 9 N -0.55 -14.41 5.29 -10.97 -0.06 -14.47 16 10 C 0.42 10.47 7.84 -10.99 -0.09 10.38 16 11 O -0.57 -16.27 15.95 5.54 0.09 -16.18 16 12 C 0.12 2.35 6.04 -5.19 -0.03 2.32 16 13 N -0.89 -16.13 2.49 -66.88 -0.17 -16.30 16 14 C 0.70 11.86 8.25 -88.50 -0.73 11.13 16 15 O -0.52 -10.14 16.54 5.29 0.09 -10.05 16 16 N -0.66 -8.21 4.98 -14.73 -0.07 -8.28 16 17 C 0.23 2.59 6.73 -83.94 -0.56 2.03 16 18 C -0.16 -1.25 9.83 -39.35 -0.39 -1.64 16 19 C -0.03 -0.22 9.99 -39.62 -0.40 -0.61 16 20 C -0.16 -1.15 10.09 -39.34 -0.40 -1.55 16 21 C 0.03 0.29 9.88 -39.98 -0.40 -0.10 16 22 C -0.68 -8.83 5.81 -39.66 -0.23 -9.06 16 23 S 2.64 44.04 5.41 -107.50 -0.58 43.46 16 24 O -0.93 -15.89 17.98 -57.32 -1.03 -16.92 16 25 O -0.90 -18.50 17.98 -57.32 -1.03 -19.53 16 26 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 28 H 0.11 1.75 8.09 -51.92 -0.42 1.33 16 29 H 0.12 2.03 7.63 -51.93 -0.40 1.63 16 30 H 0.43 3.96 8.31 -40.82 -0.34 3.62 16 31 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.14 0.41 8.06 -52.48 -0.42 -0.02 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -39.00 319.80 -8.38 -47.38 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -2.68 Total: 8.72 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -3.46 Total: 4.81 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 0.43 Total: -62.91 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: -1.89 Total: -62.68 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 44.04 SS G_CDS: -0.58 Total: 43.46 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -39.00 -8.38 -47.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749681396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.345 kcal (2) G-P(sol) polarization free energy of solvation -38.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds