Wall clock time and date at job start Fri Apr 10 2020 18:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.58084 * 2 1 4 4 C 1.53188 * 109.58395 * 120.41853 * 2 1 3 5 5 C 1.53040 * 109.30976 * 174.42612 * 4 2 1 6 6 C 1.53037 * 109.53765 * 298.63586 * 5 4 2 7 7 H 1.09010 * 109.52635 * 181.33322 * 6 5 4 8 8 N 1.46504 * 109.49997 * 301.41160 * 6 5 4 9 9 C 1.34781 * 120.00153 * 200.46817 * 8 6 5 10 10 O 1.21274 * 119.99575 * 5.02055 * 9 8 6 11 11 C 1.50693 * 119.99717 * 185.01946 * 9 8 6 12 12 N 1.46907 * 109.47159 * 184.33868 * 11 9 8 13 13 C 1.47180 * 111.00183 * 163.00232 * 12 11 9 14 14 C 1.52986 * 108.73199 * 54.36855 * 13 12 11 15 15 N 1.46016 * 110.03303 * 50.30676 * 14 13 12 16 16 C 1.33710 * 122.92916 * 341.80591 * 15 14 13 17 17 O 1.21281 * 118.62975 * 181.70889 * 16 15 14 18 18 C 1.46897 * 110.99734 * 285.89640 * 12 11 9 19 19 C 1.53189 * 109.31301 * 61.36940 * 6 5 4 20 20 N 1.46922 * 109.58735 * 239.71379 * 2 1 3 21 21 C 1.36933 * 120.63409 * 6.62431 * 20 2 1 22 22 H 1.08005 * 119.99886 * 323.26654 * 21 20 2 23 23 C 1.38813 * 120.00179 * 143.26665 * 21 20 2 24 24 N 1.31621 * 119.99969 * 171.25881 * 23 21 20 25 25 Si 1.86794 * 119.99866 * 351.25832 * 23 21 20 26 26 H 1.48509 * 109.47087 * 86.09353 * 25 23 21 27 27 H 1.48501 * 109.47161 * 206.09129 * 25 23 21 28 28 H 1.48501 * 109.47367 * 326.09288 * 25 23 21 29 29 H 1.08997 * 109.46972 * 180.28753 * 1 2 3 30 30 H 1.08996 * 109.47659 * 300.28577 * 1 2 3 31 31 H 1.09000 * 109.47191 * 60.29300 * 1 2 3 32 32 H 1.08998 * 109.50348 * 294.37895 * 4 2 1 33 33 H 1.09002 * 109.49769 * 54.47414 * 4 2 1 34 34 H 1.09003 * 109.46228 * 178.61504 * 5 4 2 35 35 H 1.08999 * 109.46344 * 58.66119 * 5 4 2 36 36 H 0.96997 * 119.99414 * 20.47351 * 8 6 5 37 37 H 1.08998 * 109.47475 * 64.34439 * 11 9 8 38 38 H 1.09001 * 109.47212 * 304.33955 * 11 9 8 39 39 H 1.09000 * 109.59568 * 174.14081 * 13 12 11 40 40 H 1.09000 * 109.59850 * 294.59894 * 13 12 11 41 41 H 1.08998 * 109.37978 * 170.46641 * 14 13 12 42 42 H 1.08993 * 109.37616 * 290.11914 * 14 13 12 43 43 H 0.96997 * 118.53735 * 161.79625 * 15 14 13 44 44 H 1.08997 * 109.38975 * 47.09039 * 18 12 11 45 45 H 1.09003 * 109.38301 * 166.76990 * 18 12 11 46 46 H 1.09002 * 109.59132 * 65.15196 * 19 6 5 47 47 H 1.09005 * 109.58749 * 185.58086 * 19 6 5 48 48 H 0.96993 * 119.99834 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7307 1.2446 5 6 3.5674 -0.8492 1.1692 6 6 3.9569 -1.6654 -0.0653 7 1 5.0412 -1.7698 -0.1059 8 7 3.3406 -2.9924 0.0114 9 6 3.8437 -4.0119 -0.7124 10 8 4.8596 -3.8552 -1.3560 11 6 3.1439 -5.3465 -0.7218 12 7 3.9390 -6.3109 -1.4938 13 6 3.5223 -7.6919 -1.2015 14 6 2.0158 -7.8113 -1.4394 15 7 1.6725 -7.2726 -2.7524 16 6 2.4801 -6.4557 -3.4367 17 8 2.1032 -6.0288 -4.5075 18 6 3.8354 -6.0447 -2.9347 19 6 3.4651 -0.9452 -1.3247 20 7 2.0226 -0.6981 -1.1953 21 6 1.1538 -1.1101 -2.1703 22 1 0.1768 -1.4830 -1.9005 23 6 1.5290 -1.0486 -3.5053 24 7 0.7699 -1.6002 -4.4283 25 14 3.1110 -0.1828 -3.9920 26 1 4.2475 -1.1331 -3.8879 27 1 2.9991 0.3037 -5.3906 28 1 3.3443 0.9692 -3.0844 29 1 -0.3633 -1.0276 0.0052 30 1 -0.3634 0.5182 0.8873 31 1 -0.3633 0.5093 -0.8926 32 1 1.7659 -0.1693 2.1367 33 1 1.6029 -1.7268 1.2894 34 1 3.9378 -1.3470 2.0654 35 1 4.0061 0.1462 1.0996 36 1 2.5705 -3.1370 0.5831 37 1 2.1605 -5.2379 -1.1791 38 1 3.0313 -5.7049 0.3014 39 1 4.0520 -8.3806 -1.8597 40 1 3.7481 -7.9296 -0.1620 41 1 1.7241 -8.8605 -1.3917 42 1 1.4828 -7.2542 -0.6690 43 1 0.8206 -7.5183 -3.1458 44 1 3.9814 -4.9801 -3.1174 45 1 4.6035 -6.6094 -3.4631 46 1 3.9904 0.0039 -1.4316 47 1 3.6519 -1.5691 -2.1989 48 1 1.0322 -1.5575 -5.3611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071739084.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:13 Heat of formation + Delta-G solvation = -26.796049 kcal Electronic energy + Delta-G solvation = -30315.368840 eV Core-core repulsion = 26406.386466 eV Total energy + Delta-G solvation = -3908.982374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.70697 -39.44895 -37.87593 -36.90877 -34.30291 -33.94484 -32.67757 -31.05436 -30.68217 -29.84773 -28.55246 -26.33644 -25.06233 -24.66841 -22.95677 -22.59683 -21.04379 -20.32033 -19.12316 -18.91400 -17.32595 -17.20379 -16.45159 -16.25522 -15.68061 -15.66510 -15.18446 -15.03162 -14.72484 -14.49769 -14.07714 -13.88953 -13.63866 -13.45141 -13.29311 -12.95098 -12.88224 -12.72652 -12.43341 -12.07157 -11.82549 -11.63186 -11.57266 -11.45568 -11.41505 -11.22712 -10.94257 -10.52488 -10.37538 -10.27159 -10.25260 -9.93291 -9.61602 -9.41210 -9.34316 -9.09135 -8.58984 -8.38990 -8.31436 -6.72654 -5.83542 -3.32784 2.79351 3.10062 3.12526 3.44190 3.46838 3.54140 3.57932 4.02149 4.46495 4.62314 4.74637 4.76881 4.91048 4.94506 5.10669 5.21518 5.23010 5.28826 5.31462 5.36063 5.46451 5.51612 5.53621 5.58379 5.80031 5.90637 5.95511 6.02148 6.14322 6.26069 6.26954 6.33367 6.42024 6.50321 6.51990 6.55972 6.73171 6.76425 6.88067 6.99329 7.06116 7.09775 7.32502 8.00417 8.14172 8.33369 8.45631 8.73720 9.02533 9.81355 10.21079 11.31145 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.005576 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.466465 B = 5020.022719 C = 5944.131575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.169 3.831 3 H 0.028 0.972 4 C -0.131 4.131 5 C -0.118 4.118 6 C 0.131 3.869 7 H 0.078 0.922 8 N -0.704 5.704 9 C 0.519 3.481 10 O -0.532 6.532 11 C 0.028 3.972 12 N -0.506 5.506 13 C 0.037 3.963 14 C 0.073 3.927 15 N -0.729 5.729 16 C 0.484 3.516 17 O -0.531 6.531 18 C 0.042 3.958 19 C 0.110 3.890 20 N -0.598 5.598 21 C -0.264 4.264 22 H 0.084 0.916 23 C 0.033 3.967 24 N -0.907 5.907 25 Si 0.887 3.113 26 H -0.283 1.283 27 H -0.306 1.306 28 H -0.272 1.272 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.395 0.605 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.398 0.602 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.031 0.969 47 H 0.079 0.921 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 -10.599 14.329 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.063 3.937 3 H 0.046 0.954 4 C -0.170 4.170 5 C -0.156 4.156 6 C 0.025 3.975 7 H 0.096 0.904 8 N -0.356 5.356 9 C 0.304 3.696 10 O -0.408 6.408 11 C -0.104 4.104 12 N -0.229 5.229 13 C -0.092 4.092 14 C -0.054 4.054 15 N -0.384 5.384 16 C 0.269 3.731 17 O -0.405 6.405 18 C -0.089 4.089 19 C -0.016 4.016 20 N -0.322 5.322 21 C -0.392 4.392 22 H 0.101 0.899 23 C -0.168 4.168 24 N -0.549 5.549 25 Si 0.718 3.282 26 H -0.210 1.210 27 H -0.234 1.234 28 H -0.197 1.197 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.230 0.770 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.234 0.766 44 H 0.144 0.856 45 H 0.130 0.870 46 H 0.049 0.951 47 H 0.097 0.903 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.729 -10.133 13.309 17.383 hybrid contribution -0.813 0.096 -0.460 0.939 sum 3.917 -10.037 12.849 16.768 Atomic orbital electron populations 1.21768 0.95356 1.01594 1.00357 1.20484 0.93520 0.93367 0.86298 0.95400 1.22063 0.94905 1.00987 0.99077 1.21676 0.97207 1.00096 0.96629 1.21436 0.96977 0.82066 0.97053 0.90449 1.45753 1.33865 1.09220 1.46748 1.20165 0.84807 0.85268 0.79372 1.90663 1.24334 1.83484 1.42299 1.22090 0.96259 0.91963 1.00044 1.62175 1.53634 1.01465 1.05617 1.22653 0.92292 0.90485 1.03727 1.22109 0.98283 0.99797 0.85180 1.45614 1.22386 1.50152 1.20240 1.21364 0.88465 0.77927 0.85299 1.90836 1.74411 1.52794 1.22472 1.22545 0.92477 1.06233 0.87606 1.21856 0.86161 0.96997 0.96635 1.44300 1.01463 1.65626 1.20851 1.18700 0.98662 1.37369 0.84481 0.89880 1.25463 0.97288 0.98080 0.95924 1.69713 1.38348 1.45901 1.00909 0.86937 0.84330 0.80546 0.76409 1.21001 1.23440 1.19738 0.92778 0.94386 0.91680 0.92489 0.92338 0.92443 0.91042 0.77008 0.90751 0.88097 0.89278 0.88312 0.90160 0.91494 0.76610 0.85638 0.87034 0.95113 0.90280 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.01 37.16 0.30 -2.07 16 2 C 0.17 3.13 3.50 -67.60 -0.24 2.90 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -1.88 5.21 -26.61 -0.14 -2.02 16 5 C -0.12 -1.65 5.57 -26.69 -0.15 -1.80 16 6 C 0.13 2.28 2.80 -67.81 -0.19 2.09 16 7 H 0.08 1.37 7.65 -51.92 -0.40 0.97 16 8 N -0.70 -11.43 4.93 -53.69 -0.26 -11.70 16 9 C 0.52 9.06 7.37 -10.99 -0.08 8.98 16 10 O -0.53 -11.21 14.63 5.56 0.08 -11.13 16 11 C 0.03 0.37 4.30 -4.98 -0.02 0.35 16 12 N -0.51 -6.62 4.66 -237.56 -1.11 -7.73 16 13 C 0.04 0.32 5.97 -3.68 -0.02 0.29 16 14 C 0.07 0.60 6.49 -4.31 -0.03 0.57 16 15 N -0.73 -9.25 5.36 -61.06 -0.33 -9.57 16 16 C 0.48 8.39 6.97 -11.68 -0.08 8.31 16 17 O -0.53 -12.17 17.82 5.56 0.10 -12.07 16 18 C 0.04 0.68 5.53 -5.19 -0.03 0.65 16 19 C 0.11 2.42 3.70 -3.71 -0.01 2.41 16 20 N -0.60 -13.53 2.61 -164.77 -0.43 -13.96 16 21 C -0.26 -7.16 8.87 -15.06 -0.13 -7.30 16 22 H 0.08 2.41 6.67 -52.48 -0.35 2.06 16 23 C 0.03 0.97 5.38 -17.43 -0.09 0.88 16 24 N -0.91 -28.89 13.97 55.49 0.78 -28.11 16 25 Si 0.89 23.91 24.28 -169.99 -4.13 19.78 16 26 H -0.28 -7.72 6.54 56.52 0.37 -7.36 16 27 H -0.31 -8.44 7.11 56.52 0.40 -8.04 16 28 H -0.27 -7.06 6.46 56.52 0.37 -6.70 16 29 H 0.05 0.99 7.42 -51.93 -0.39 0.61 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.83 6.43 -51.93 -0.33 0.49 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.40 5.55 6.80 -40.82 -0.28 5.28 16 37 H 0.07 1.13 6.53 -51.93 -0.34 0.79 16 38 H 0.10 0.97 7.98 -51.93 -0.41 0.56 16 39 H 0.09 0.70 8.08 -51.93 -0.42 0.29 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.52 7.24 -51.93 -0.38 0.15 16 43 H 0.40 4.83 8.84 -40.82 -0.36 4.47 16 44 H 0.13 2.56 6.42 -51.93 -0.33 2.23 16 45 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 46 H 0.03 0.69 6.78 -51.93 -0.35 0.34 16 47 H 0.08 2.05 4.72 -51.93 -0.25 1.80 16 48 H 0.26 8.19 8.31 -40.82 -0.34 7.85 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -37.07 360.69 -8.35 -45.42 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.57 Total: 9.38 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -0.92 Total: 14.24 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -1.35 Total: -71.07 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.18 Total: -23.19 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -4.13 Total: 19.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.07 -8.35 -45.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071739084.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.629 kcal (2) G-P(sol) polarization free energy of solvation -37.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds