Wall clock time and date at job start Fri Apr 10 2020 18:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46763 * 2 1 4 4 N 1.46496 * 109.47520 * 239.99845 * 2 1 3 5 5 C 1.34773 * 119.99973 * 84.99489 * 4 2 1 6 6 N 1.34784 * 119.99935 * 180.02562 * 5 4 2 7 7 O 1.21588 * 120.00151 * 359.73121 * 5 4 2 8 8 C 1.50704 * 109.47253 * 119.99155 * 2 1 3 9 9 O 1.21290 * 119.99499 * 119.99857 * 8 2 1 10 10 N 1.34774 * 120.00459 * 300.00678 * 8 2 1 11 11 C 1.48122 * 127.83953 * 0.02562 * 10 8 2 12 12 C 1.54333 * 104.69002 * 219.74634 * 11 10 8 13 13 H 1.08992 * 111.85164 * 214.56897 * 12 11 10 14 14 C 1.54159 * 108.86076 * 89.56656 * 12 11 10 15 15 C 1.55767 * 103.88539 * 222.53019 * 14 12 11 16 16 C 1.54844 * 102.31453 * 39.34436 * 15 14 12 17 17 C 1.54156 * 104.32371 * 321.13610 * 16 15 14 18 18 C 1.52998 * 111.82409 * 261.23896 * 17 16 15 19 19 N 1.46500 * 109.47339 * 299.26467 * 18 17 16 20 20 C 1.36940 * 120.00594 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99285 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00251 * 179.97438 * 20 19 18 23 23 N 1.31610 * 119.99842 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99875 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47023 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47198 * 120.00167 * 24 22 20 27 27 H 1.48496 * 109.46858 * 240.00232 * 24 22 20 28 28 C 1.48115 * 127.84686 * 179.70165 * 10 8 2 29 29 H 1.08999 * 109.47375 * 60.00752 * 1 2 3 30 30 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47274 * 300.00214 * 1 2 3 32 32 H 0.97004 * 120.00009 * 265.00338 * 4 2 1 33 33 H 0.96999 * 120.00044 * 179.72863 * 6 5 4 34 34 H 0.97005 * 119.99846 * 359.72693 * 6 5 4 35 35 H 1.08996 * 110.39516 * 338.54733 * 11 10 8 36 36 H 1.08998 * 110.39331 * 100.94864 * 11 10 8 37 37 H 1.09005 * 110.46155 * 342.50024 * 14 12 11 38 38 H 1.08998 * 110.46201 * 105.07310 * 14 12 11 39 39 H 1.09001 * 111.54121 * 280.90833 * 15 14 12 40 40 H 1.09000 * 110.53311 * 157.32428 * 15 14 12 41 41 H 1.08995 * 110.46591 * 202.41957 * 16 15 14 42 42 H 1.09002 * 110.46000 * 79.84217 * 16 15 14 43 43 H 1.09002 * 109.46936 * 59.26148 * 18 17 16 44 44 H 1.08998 * 109.47662 * 179.25951 * 18 17 16 45 45 H 0.97002 * 120.00097 * 359.97438 * 19 18 17 46 46 H 0.97007 * 119.99836 * 180.02562 * 23 22 20 47 47 H 1.08996 * 110.39486 * 259.05894 * 28 10 8 48 48 H 1.09005 * 110.38664 * 21.45012 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 7 2.5959 -0.6538 -3.4576 7 8 1.8531 1.1602 -2.4130 8 6 2.0323 -0.7102 1.2306 9 8 2.7296 -1.6964 1.1193 10 7 1.7067 -0.2498 2.4547 11 6 0.8732 0.9278 2.7904 12 6 1.5827 1.5782 3.9969 13 1 0.8721 2.0189 4.6961 14 6 2.6126 2.6008 3.4775 15 6 3.8629 2.3611 4.3751 16 6 3.8813 0.8187 4.5105 17 6 2.3957 0.4298 4.6452 18 6 1.9977 0.2015 6.1048 19 7 2.7966 -0.8920 6.6635 20 6 2.6145 -1.2776 7.9648 21 1 1.8816 -0.7757 8.5791 22 6 3.3712 -2.3141 8.4940 23 7 4.2639 -2.9260 7.7452 24 14 3.1222 -2.8404 10.2689 25 1 2.0677 -2.0000 10.8912 26 1 2.7078 -4.2658 10.3091 27 1 4.3937 -2.6733 11.0177 28 6 2.0956 -0.8100 3.7694 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2491 -1.6318 -1.1525 33 1 2.6848 -0.1710 -4.2942 34 1 2.8301 -1.5941 -3.4131 35 1 0.8398 1.6214 1.9504 36 1 -0.1337 0.6143 3.0657 37 1 2.8308 2.4208 2.4248 38 1 2.2472 3.6173 3.6234 39 1 3.7513 2.8332 5.3512 40 1 4.7650 2.7160 3.8768 41 1 4.4355 0.5208 5.4005 42 1 4.3151 0.3632 3.6202 43 1 2.1772 1.1117 6.6770 44 1 0.9403 -0.0577 6.1568 45 1 3.4546 -1.3431 6.1117 46 1 4.7924 -3.6506 8.1149 47 1 1.2748 -1.3882 4.1938 48 1 2.9863 -1.4304 3.6694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112326122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:19 Heat of formation + Delta-G solvation = -54.262332 kcal Electronic energy + Delta-G solvation = -28931.352963 eV Core-core repulsion = 25021.179562 eV Total energy + Delta-G solvation = -3910.173401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91266 -40.03060 -38.59296 -35.17410 -34.93759 -34.21614 -33.93657 -31.71409 -30.63780 -29.89500 -28.95443 -25.92939 -25.47181 -24.52553 -23.26443 -22.26960 -21.18849 -20.29639 -19.75490 -18.81786 -18.47388 -17.57404 -17.06352 -16.49683 -16.01439 -15.71030 -15.37661 -14.85404 -14.82213 -14.68837 -14.46802 -14.13733 -13.86568 -13.67911 -13.29694 -13.09819 -12.82909 -12.77596 -12.65978 -12.29984 -11.95144 -11.83136 -11.43893 -11.16519 -10.89115 -10.85155 -10.69689 -10.57978 -10.56353 -10.50166 -10.44608 -10.18801 -9.99990 -9.94418 -9.85939 -9.65578 -9.33400 -8.89176 -8.64269 -6.92230 -5.76334 -3.05272 2.40291 2.51266 2.93802 3.08622 3.43218 3.48736 3.51117 4.17347 4.23501 4.46214 4.57655 4.66107 4.72707 4.81985 4.90546 5.19551 5.31391 5.32638 5.38188 5.42487 5.50055 5.54507 5.60393 5.64537 5.68879 5.76401 5.87278 5.89715 5.95091 6.03309 6.11828 6.14769 6.21181 6.23518 6.35448 6.42318 6.50130 6.55118 6.63409 6.71516 6.75854 6.80633 7.52255 7.68921 7.70385 8.04057 8.35244 8.42003 9.53618 10.10820 10.45302 11.46272 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.002963 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.159322 B = 9446.635978 C =10070.083816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.113 0.887 4 N -0.727 5.727 5 C 0.710 3.290 6 N -0.866 5.866 7 O -0.597 6.597 8 C 0.529 3.471 9 O -0.538 6.538 10 N -0.611 5.611 11 C 0.100 3.900 12 C -0.100 4.100 13 H 0.097 0.903 14 C -0.115 4.115 15 C -0.121 4.121 16 C -0.112 4.112 17 C -0.073 4.073 18 C 0.173 3.827 19 N -0.731 5.731 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.121 3.879 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.407 0.593 33 H 0.415 0.585 34 H 0.398 0.602 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.024 0.976 44 H 0.021 0.979 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.078 0.922 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.843 8.664 -19.047 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.130 0.870 4 N -0.385 5.385 5 C 0.408 3.592 6 N -0.434 5.434 7 O -0.475 6.475 8 C 0.317 3.683 9 O -0.416 6.416 10 N -0.345 5.345 11 C -0.023 4.023 12 C -0.119 4.119 13 H 0.115 0.885 14 C -0.152 4.152 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.074 4.074 18 C 0.045 3.955 19 N -0.375 5.375 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.001 4.001 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.243 0.757 33 H 0.247 0.753 34 H 0.226 0.774 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.096 0.904 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.793 9.064 -18.917 22.049 hybrid contribution 0.391 -1.267 0.546 1.434 sum -6.402 7.797 -18.371 20.959 Atomic orbital electron populations 1.22273 0.92965 1.03258 1.03854 1.20495 0.95445 0.97603 0.82509 0.86957 1.44787 1.71258 1.14493 1.07965 1.15849 0.77941 0.84809 0.80576 1.42936 1.73435 1.15174 1.11870 1.90965 1.57433 1.14405 1.84745 1.20082 0.80344 0.84571 0.83341 1.90722 1.38465 1.26613 1.85767 1.48857 1.50706 1.29568 1.05337 1.22674 0.94442 0.87328 0.97883 1.22779 0.97444 0.95747 0.95978 0.88499 1.22553 0.95515 0.98079 0.99065 1.22620 0.97151 0.96652 0.99451 1.22403 0.95118 0.94951 1.02456 1.22346 0.95742 0.93288 0.96064 1.20569 0.94376 0.92069 0.88440 1.42379 1.45173 1.38406 1.11559 1.19239 1.16773 1.12900 0.88132 0.91175 1.24732 0.99004 0.99068 0.98097 1.69668 1.26590 1.26257 1.35431 0.86143 0.77206 0.78134 0.84841 1.20601 1.21926 1.21927 1.22555 1.01793 0.95787 0.79919 0.90765 0.91816 0.90414 0.75685 0.75303 0.77361 0.90036 0.90624 0.91755 0.91861 0.91174 0.92160 0.89858 0.92233 0.95783 0.96159 0.78093 0.93553 0.90389 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.23 37.16 0.34 -1.16 16 2 C 0.15 1.65 2.31 -69.08 -0.16 1.49 16 3 H 0.11 1.30 7.39 -51.93 -0.38 0.91 16 4 N -0.73 -7.62 4.96 -59.81 -0.30 -7.92 16 5 C 0.71 7.79 8.80 -86.91 -0.77 7.02 16 6 N -0.87 -5.73 8.88 27.64 0.25 -5.49 16 7 O -0.60 -8.76 16.84 5.29 0.09 -8.67 16 8 C 0.53 7.29 7.33 -10.98 -0.08 7.21 16 9 O -0.54 -9.25 16.10 5.55 0.09 -9.16 16 10 N -0.61 -7.99 3.30 -169.17 -0.56 -8.55 16 11 C 0.10 1.00 4.53 -2.45 -0.01 0.99 16 12 C -0.10 -1.13 3.55 -88.30 -0.31 -1.45 16 13 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 14 C -0.11 -1.24 6.30 -24.65 -0.16 -1.39 16 15 C -0.12 -1.55 6.95 -24.28 -0.17 -1.72 16 16 C -0.11 -1.75 5.60 -25.15 -0.14 -1.89 16 17 C -0.07 -1.10 0.61 -151.98 -0.09 -1.19 16 18 C 0.17 3.24 5.14 -4.04 -0.02 3.22 16 19 N -0.73 -17.63 4.91 -59.91 -0.29 -17.92 16 20 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 24 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 C 0.12 1.93 5.51 -2.24 -0.01 1.92 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.60 5.34 -51.93 -0.28 0.33 16 32 H 0.41 3.95 7.80 -40.82 -0.32 3.63 16 33 H 0.41 2.21 8.93 -40.82 -0.36 1.84 16 34 H 0.40 1.62 8.84 -40.82 -0.36 1.26 16 35 H 0.08 0.67 6.11 -51.93 -0.32 0.35 16 36 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 37 H 0.06 0.70 7.58 -51.93 -0.39 0.31 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.55 7.14 -51.93 -0.37 1.18 16 42 H 0.06 0.97 7.66 -51.93 -0.40 0.57 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.38 9.90 6.87 -40.82 -0.28 9.62 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.08 1.31 7.96 -51.93 -0.41 0.90 16 48 H 0.09 1.62 7.51 -51.93 -0.39 1.23 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -34.37 378.46 -8.74 -43.12 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -7.60 Total: 12.97 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.82 Total: 5.92 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -0.18 Total: -67.07 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.18 Total: -17.83 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.37 -8.74 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112326122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.146 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds