Wall clock time and date at job start Fri Apr 10 2020 18:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46763 * 2 1 4 4 N 1.46496 * 109.47520 * 239.99845 * 2 1 3 5 5 C 1.34773 * 119.99973 * 84.99489 * 4 2 1 6 6 N 1.34784 * 119.99935 * 180.02562 * 5 4 2 7 7 O 1.21588 * 120.00151 * 359.73121 * 5 4 2 8 8 C 1.50704 * 109.47253 * 119.99155 * 2 1 3 9 9 O 1.21290 * 119.99499 * 119.99857 * 8 2 1 10 10 N 1.34774 * 120.00459 * 300.00678 * 8 2 1 11 11 C 1.48122 * 127.83953 * 0.02562 * 10 8 2 12 12 C 1.54333 * 104.69002 * 219.74634 * 11 10 8 13 13 H 1.08992 * 111.85164 * 214.56897 * 12 11 10 14 14 C 1.54159 * 108.86076 * 89.56656 * 12 11 10 15 15 C 1.55767 * 103.88539 * 222.53019 * 14 12 11 16 16 C 1.54844 * 102.31453 * 39.34436 * 15 14 12 17 17 C 1.54156 * 104.32371 * 321.13610 * 16 15 14 18 18 C 1.52998 * 111.82409 * 261.23896 * 17 16 15 19 19 N 1.46500 * 109.47339 * 299.26467 * 18 17 16 20 20 C 1.36940 * 120.00594 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99285 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00251 * 179.97438 * 20 19 18 23 23 N 1.31610 * 119.99842 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99875 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47023 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47198 * 120.00167 * 24 22 20 27 27 H 1.48496 * 109.46858 * 240.00232 * 24 22 20 28 28 C 1.48115 * 127.84686 * 179.70165 * 10 8 2 29 29 H 1.08999 * 109.47375 * 60.00752 * 1 2 3 30 30 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47274 * 300.00214 * 1 2 3 32 32 H 0.97004 * 120.00009 * 265.00338 * 4 2 1 33 33 H 0.96999 * 120.00044 * 179.72863 * 6 5 4 34 34 H 0.97005 * 119.99846 * 359.72693 * 6 5 4 35 35 H 1.08996 * 110.39516 * 338.54733 * 11 10 8 36 36 H 1.08998 * 110.39331 * 100.94864 * 11 10 8 37 37 H 1.09005 * 110.46155 * 342.50024 * 14 12 11 38 38 H 1.08998 * 110.46201 * 105.07310 * 14 12 11 39 39 H 1.09001 * 111.54121 * 280.90833 * 15 14 12 40 40 H 1.09000 * 110.53311 * 157.32428 * 15 14 12 41 41 H 1.08995 * 110.46591 * 202.41957 * 16 15 14 42 42 H 1.09002 * 110.46000 * 79.84217 * 16 15 14 43 43 H 1.09002 * 109.46936 * 59.26148 * 18 17 16 44 44 H 1.08998 * 109.47662 * 179.25951 * 18 17 16 45 45 H 0.97002 * 120.00097 * 359.97438 * 19 18 17 46 46 H 0.97007 * 119.99836 * 180.02562 * 23 22 20 47 47 H 1.08996 * 110.39486 * 259.05894 * 28 10 8 48 48 H 1.09005 * 110.38664 * 21.45012 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 7 2.5959 -0.6538 -3.4576 7 8 1.8531 1.1602 -2.4130 8 6 2.0323 -0.7102 1.2306 9 8 2.7296 -1.6964 1.1193 10 7 1.7067 -0.2498 2.4547 11 6 0.8732 0.9278 2.7904 12 6 1.5827 1.5782 3.9969 13 1 0.8721 2.0189 4.6961 14 6 2.6126 2.6008 3.4775 15 6 3.8629 2.3611 4.3751 16 6 3.8813 0.8187 4.5105 17 6 2.3957 0.4298 4.6452 18 6 1.9977 0.2015 6.1048 19 7 2.7966 -0.8920 6.6635 20 6 2.6145 -1.2776 7.9648 21 1 1.8816 -0.7757 8.5791 22 6 3.3712 -2.3141 8.4940 23 7 4.2639 -2.9260 7.7452 24 14 3.1222 -2.8404 10.2689 25 1 2.0677 -2.0000 10.8912 26 1 2.7078 -4.2658 10.3091 27 1 4.3937 -2.6733 11.0177 28 6 2.0956 -0.8100 3.7694 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2491 -1.6318 -1.1525 33 1 2.6848 -0.1710 -4.2942 34 1 2.8301 -1.5941 -3.4131 35 1 0.8398 1.6214 1.9504 36 1 -0.1337 0.6143 3.0657 37 1 2.8308 2.4208 2.4248 38 1 2.2472 3.6173 3.6234 39 1 3.7513 2.8332 5.3512 40 1 4.7650 2.7160 3.8768 41 1 4.4355 0.5208 5.4005 42 1 4.3151 0.3632 3.6202 43 1 2.1772 1.1117 6.6770 44 1 0.9403 -0.0577 6.1568 45 1 3.4546 -1.3431 6.1117 46 1 4.7924 -3.6506 8.1149 47 1 1.2748 -1.3882 4.1938 48 1 2.9863 -1.4304 3.6694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112326122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:18 Heat of formation + Delta-G solvation = -81.498300 kcal Electronic energy + Delta-G solvation = -28932.534003 eV Core-core repulsion = 25021.179562 eV Total energy + Delta-G solvation = -3911.354442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.97340 -40.97035 -39.70083 -36.53658 -36.05188 -35.58746 -34.69584 -33.43087 -31.67447 -31.05896 -30.25708 -27.35381 -26.52988 -25.84757 -24.63984 -23.63268 -22.03679 -21.35969 -20.73953 -19.95346 -19.55396 -19.01491 -18.21810 -17.61984 -17.12859 -16.59583 -16.58094 -16.35357 -15.86416 -15.83180 -15.68414 -15.17294 -15.00391 -14.98280 -14.78095 -14.58388 -14.16982 -13.83637 -13.66427 -13.31362 -13.15176 -12.98981 -12.84733 -12.65517 -12.63416 -12.11003 -12.02722 -11.89052 -11.78241 -11.65506 -11.52879 -11.52037 -11.46374 -11.36596 -10.99835 -10.91081 -10.72373 -10.15651 -9.76063 -8.95535 -7.92529 -5.20587 1.43011 1.47866 1.48241 1.50034 1.58366 2.08733 2.16833 2.57164 3.19805 3.41421 3.43291 3.54030 3.61863 3.64320 4.00783 4.06679 4.15696 4.25163 4.27282 4.31768 4.42416 4.44020 4.59157 4.65785 4.67954 4.70955 4.71781 4.77487 4.93140 4.96349 5.00381 5.08046 5.14306 5.17639 5.24993 5.30547 5.32919 5.41396 5.45558 5.53348 5.54423 5.80044 6.01988 6.29280 6.47702 6.92086 7.00062 7.35872 7.59052 8.13264 8.34802 9.31305 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.002963 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.159322 B = 9446.635978 C =10070.083816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.114 0.886 4 N -0.727 5.727 5 C 0.706 3.294 6 N -0.847 5.847 7 O -0.635 6.635 8 C 0.526 3.474 9 O -0.581 6.581 10 N -0.607 5.607 11 C 0.097 3.903 12 C -0.091 4.091 13 H 0.119 0.881 14 C -0.106 4.106 15 C -0.118 4.118 16 C -0.110 4.110 17 C -0.068 4.068 18 C 0.173 3.827 19 N -0.743 5.743 20 C -0.236 4.236 21 H 0.079 0.921 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.971 3.029 25 H -0.263 1.263 26 H -0.297 1.297 27 H -0.297 1.297 28 C 0.127 3.873 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.410 0.590 33 H 0.423 0.577 34 H 0.413 0.587 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.029 0.971 44 H 0.030 0.970 45 H 0.372 0.628 46 H 0.249 0.751 47 H 0.067 0.933 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 10.850 -19.842 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.132 0.868 4 N -0.385 5.385 5 C 0.404 3.596 6 N -0.416 5.416 7 O -0.516 6.516 8 C 0.315 3.685 9 O -0.462 6.462 10 N -0.339 5.339 11 C -0.024 4.024 12 C -0.111 4.111 13 H 0.137 0.863 14 C -0.143 4.143 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.069 4.069 18 C 0.047 3.953 19 N -0.386 5.386 20 C -0.368 4.368 21 H 0.097 0.903 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.801 3.199 25 H -0.187 1.187 26 H -0.224 1.224 27 H -0.224 1.224 28 C 0.004 3.996 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.247 0.753 33 H 0.257 0.743 34 H 0.243 0.757 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.204 0.796 46 H 0.057 0.943 47 H 0.085 0.915 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.056 11.283 -19.734 24.469 hybrid contribution 1.111 -1.953 0.762 2.372 sum -7.945 9.330 -18.972 22.586 Atomic orbital electron populations 1.22237 0.90998 1.03522 1.04757 1.20480 0.96747 0.96922 0.81146 0.86835 1.44785 1.71230 1.14594 1.07848 1.16008 0.77922 0.84420 0.81217 1.42773 1.71882 1.15870 1.11055 1.90934 1.59257 1.16036 1.85399 1.20658 0.79572 0.84116 0.84131 1.90702 1.40374 1.28664 1.86413 1.48863 1.50756 1.30190 1.04122 1.22977 0.94577 0.86448 0.98398 1.22822 0.97475 0.94278 0.96487 0.86283 1.22542 0.93850 0.99424 0.98513 1.22614 0.98957 0.93689 1.00284 1.22296 0.95100 0.97611 0.99830 1.22206 0.96006 0.94678 0.94006 1.20730 0.93864 0.90271 0.90444 1.42607 1.45542 1.39625 1.10789 1.19678 1.15757 1.12050 0.89342 0.90289 1.25547 0.99497 0.99913 1.02114 1.69840 1.28132 1.27108 1.37208 0.85100 0.77143 0.77440 0.80253 1.18710 1.22407 1.22408 1.22243 0.99598 0.95817 0.81946 0.90676 0.91908 0.88586 0.75316 0.74312 0.75703 0.87065 0.88361 0.91476 0.88904 0.91092 0.91512 0.93737 0.93732 0.95307 0.95218 0.79578 0.94259 0.91488 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.23 71.98 0.66 -1.77 16 2 C 0.16 3.21 2.31 44.25 0.10 3.32 16 3 H 0.11 2.37 7.39 -2.39 -0.02 2.35 16 4 N -0.73 -14.48 4.96 -461.41 -2.29 -16.77 16 5 C 0.71 14.55 8.80 179.05 1.58 16.12 16 6 N -0.85 -9.86 8.88 -184.74 -1.64 -11.50 16 7 O -0.63 -17.77 16.84 -3.99 -0.07 -17.84 16 8 C 0.53 14.25 7.33 87.66 0.64 14.89 16 9 O -0.58 -20.59 16.10 -3.06 -0.05 -20.64 16 10 N -0.61 -15.27 3.30 -807.51 -2.66 -17.94 16 11 C 0.10 1.61 4.53 86.52 0.39 2.00 16 12 C -0.09 -1.77 3.55 -9.29 -0.03 -1.81 16 13 H 0.12 1.90 7.88 -2.39 -0.02 1.88 16 14 C -0.11 -1.91 6.30 31.94 0.20 -1.71 16 15 C -0.12 -2.84 6.95 32.18 0.22 -2.62 16 16 C -0.11 -3.57 5.60 31.62 0.18 -3.40 16 17 C -0.07 -2.01 0.61 -50.54 -0.03 -2.05 16 18 C 0.17 6.40 5.14 86.38 0.44 6.84 16 19 N -0.74 -36.82 4.91 -343.45 -1.69 -38.51 16 20 C -0.24 -12.98 9.99 84.03 0.84 -12.14 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 23 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 24 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 25 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 28 C 0.13 4.15 5.51 86.66 0.48 4.63 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.12 5.34 -2.39 -0.01 1.10 16 32 H 0.41 7.73 7.80 -92.71 -0.72 7.01 16 33 H 0.42 3.78 8.93 -92.71 -0.83 2.95 16 34 H 0.41 2.66 8.84 -92.70 -0.82 1.84 16 35 H 0.11 1.28 6.11 -2.39 -0.01 1.26 16 36 H 0.10 1.28 8.02 -2.39 -0.02 1.26 16 37 H 0.07 1.21 7.58 -2.38 -0.02 1.20 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.04 1.76 7.14 -2.39 -0.02 1.75 16 42 H 0.04 1.54 7.66 -2.39 -0.02 1.52 16 43 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.37 20.22 6.87 -92.71 -0.64 19.59 16 46 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 47 H 0.07 2.31 7.96 -2.39 -0.02 2.29 16 48 H 0.05 1.87 7.51 -2.38 -0.02 1.85 16 Total: -1.00 -77.92 378.46 -1.93 -79.86 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -1.99 Total: 36.89 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 6.14 Total: 18.25 kcal Atomic # 7 Polarization: -136.89 SS G_CDS: -8.00 Total: -144.89 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -0.12 Total: -38.47 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -77.92 -1.93 -79.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112326122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.643 kcal (2) G-P(sol) polarization free energy of solvation -77.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds