Wall clock time and date at job start Fri Apr 10 2020 18:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47054 * 125.40972 * 2 1 4 4 C 1.54106 * 103.86040 * 180.22836 * 3 2 1 5 5 H 1.09001 * 110.54275 * 118.36414 * 4 3 2 6 6 C 1.50697 * 110.55392 * 241.17596 * 4 3 2 7 7 O 1.21284 * 119.99770 * 95.89610 * 6 4 3 8 8 N 1.34780 * 120.00104 * 275.90360 * 6 4 3 9 9 C 1.46495 * 120.00031 * 179.97438 * 8 6 4 10 10 C 1.52995 * 109.47437 * 175.97779 * 9 8 6 11 11 N 1.46509 * 109.46954 * 305.25169 * 10 9 8 12 12 C 1.36926 * 120.00002 * 300.07258 * 11 10 9 13 13 H 1.08007 * 120.00096 * 354.07119 * 12 11 10 14 14 C 1.38817 * 120.00220 * 174.07300 * 12 11 10 15 15 N 1.31614 * 119.99533 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00021 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.46965 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46766 * 119.99776 * 16 14 12 19 19 H 1.48496 * 109.47044 * 240.00133 * 16 14 12 20 20 C 1.52996 * 109.47637 * 185.25129 * 10 9 8 21 21 C 1.53001 * 109.47255 * 180.02562 * 20 10 9 22 22 C 1.53003 * 109.47227 * 59.99434 * 21 20 10 23 23 C 1.52996 * 109.47465 * 300.00437 * 22 21 20 24 24 C 1.53001 * 109.47255 * 59.99580 * 23 22 21 25 25 N 1.47059 * 103.86213 * 359.77480 * 4 3 2 26 26 C 1.33942 * 109.17732 * 359.97438 * 25 4 3 27 27 O 1.21591 * 123.04252 * 180.02562 * 26 25 4 28 28 H 1.09004 * 109.47166 * 180.21123 * 1 2 3 29 29 H 1.09006 * 109.47164 * 300.20585 * 1 2 3 30 30 H 1.08997 * 109.47694 * 60.21004 * 1 2 3 31 31 H 1.08998 * 110.74134 * 61.54508 * 3 2 1 32 32 H 1.08995 * 110.47844 * 298.78873 * 3 2 1 33 33 H 0.97000 * 119.99638 * 359.97438 * 8 6 4 34 34 H 1.08994 * 109.47415 * 295.97953 * 9 8 6 35 35 H 1.09002 * 109.46836 * 55.98030 * 9 8 6 36 36 H 0.97006 * 119.99478 * 120.07625 * 11 10 9 37 37 H 0.97008 * 119.99904 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.46927 * 299.99768 * 20 10 9 39 39 H 1.08995 * 109.47344 * 59.99608 * 20 10 9 40 40 H 1.08999 * 109.46734 * 299.99605 * 21 20 10 41 41 H 1.08996 * 109.47250 * 179.97438 * 21 20 10 42 42 H 1.08998 * 109.47014 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.46755 * 60.00044 * 22 21 20 44 44 H 1.09002 * 109.46814 * 299.99572 * 23 22 21 45 45 H 1.08995 * 109.47344 * 180.02562 * 23 22 21 46 46 H 1.08995 * 109.46737 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.46734 * 60.00395 * 24 23 22 48 48 H 0.96998 * 125.40930 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 -0.0060 5 1 4.2813 0.9451 -0.9051 6 6 4.4964 1.0681 1.2288 7 8 4.5491 0.3368 2.1950 8 7 5.1048 2.2703 1.2597 9 6 5.8295 2.6939 2.4602 10 6 6.5055 4.0414 2.1991 11 7 7.3502 3.9409 1.0062 12 6 8.3807 3.0400 0.9709 13 1 8.6317 2.4716 1.8544 14 6 9.1030 2.8571 -0.2003 15 7 8.7969 3.5494 -1.2770 16 14 10.5094 1.6285 -0.2482 17 1 10.6490 0.9840 1.0822 18 1 10.2261 0.5916 -1.2728 19 1 11.7705 2.3330 -0.5923 20 6 7.3682 4.4213 3.4042 21 6 8.0437 5.7691 3.1433 22 6 6.9746 6.8413 2.9229 23 6 6.1120 6.4613 1.7178 24 6 5.4365 5.1135 1.9787 25 7 3.5537 -0.8249 -0.0031 26 6 2.2411 -1.0917 0.0040 27 8 1.7945 -2.2226 0.0082 28 1 -0.3634 -1.0277 0.0038 29 1 -0.3634 0.5171 0.8882 30 1 -0.3634 0.5105 -0.8918 31 1 2.1449 1.7946 0.8962 32 1 2.1372 1.7942 -0.8949 33 1 5.0628 2.8550 0.4868 34 1 5.1305 2.7931 3.2906 35 1 6.5863 1.9500 2.7092 36 1 7.1793 4.5127 0.2415 37 1 9.3018 3.4219 -2.0954 38 1 6.7398 4.4961 4.2917 39 1 8.1295 3.6573 3.5615 40 1 8.6720 5.6947 2.2557 41 1 8.6579 6.0400 4.0020 42 1 7.4559 7.8013 2.7365 43 1 6.3462 6.9156 3.8104 44 1 6.7403 6.3870 0.8302 45 1 5.3507 7.2253 1.5605 46 1 4.8223 4.8427 1.1200 47 1 4.8081 5.1879 2.8663 48 1 4.2620 -1.4876 -0.0059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115665235.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:41 Heat of formation + Delta-G solvation = -45.374052 kcal Electronic energy + Delta-G solvation = -29198.645375 eV Core-core repulsion = 25288.857399 eV Total energy + Delta-G solvation = -3909.787977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.30762 -39.44646 -38.38657 -36.17715 -34.59392 -34.09217 -33.36531 -31.35363 -30.34602 -29.58142 -28.56230 -27.34989 -25.44199 -23.85550 -23.56032 -22.20528 -20.67994 -20.56141 -20.12162 -18.46269 -17.78391 -17.51213 -17.17969 -16.39319 -15.74068 -15.38792 -15.18577 -14.79164 -14.47168 -14.25919 -14.05321 -14.02694 -13.74998 -13.66618 -13.55630 -13.15976 -12.92356 -12.68402 -12.44109 -12.29454 -11.99588 -11.89413 -11.78478 -11.65312 -11.17724 -10.95211 -10.83971 -10.65356 -10.29156 -10.22793 -10.14083 -10.03666 -9.83183 -9.69867 -9.38128 -9.21502 -8.98104 -8.65253 -8.56498 -7.08490 -5.88175 -3.16890 2.42261 2.84084 3.03296 3.36184 3.42721 3.44884 3.45724 3.93317 4.24790 4.50257 4.71390 4.76030 5.03375 5.11445 5.16073 5.17400 5.19017 5.26772 5.43254 5.46636 5.53907 5.54918 5.64230 5.72666 5.79272 5.87571 5.94377 6.02159 6.07257 6.10128 6.21012 6.35652 6.42073 6.49911 6.54856 6.69058 6.70463 6.71981 6.87903 6.96129 7.07819 7.08327 7.39301 7.65398 7.88057 8.29974 8.49027 8.57916 9.43261 9.95164 10.31791 11.33672 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.004138 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.768927 B = 6764.227554 C = 8292.777827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.638 5.638 3 C 0.109 3.891 4 C 0.102 3.898 5 H 0.118 0.882 6 C 0.499 3.501 7 O -0.539 6.539 8 N -0.690 5.690 9 C 0.117 3.883 10 C 0.191 3.809 11 N -0.709 5.709 12 C -0.229 4.229 13 H 0.069 0.931 14 C -0.007 4.007 15 N -0.931 5.931 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.293 1.293 19 H -0.293 1.293 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.114 4.114 25 N -0.712 5.712 26 C 0.706 3.294 27 O -0.589 6.589 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.404 0.596 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.385 0.615 37 H 0.254 0.746 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.699 4.861 2.889 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.378 5.378 3 C -0.016 4.016 4 C -0.008 4.008 5 H 0.136 0.864 6 C 0.282 3.718 7 O -0.416 6.416 8 N -0.341 5.341 9 C -0.009 4.009 10 C 0.099 3.901 11 N -0.351 5.351 12 C -0.361 4.361 13 H 0.087 0.913 14 C -0.203 4.203 15 N -0.579 5.579 16 Si 0.730 3.270 17 H -0.207 1.207 18 H -0.220 1.220 19 H -0.220 1.220 20 C -0.157 4.157 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.153 4.153 24 C -0.152 4.152 25 N -0.373 5.373 26 C 0.406 3.594 27 O -0.468 6.468 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.239 0.761 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.220 0.780 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -12.941 3.644 3.600 13.918 hybrid contribution 1.365 -0.363 -0.683 1.569 sum -11.576 3.281 2.917 12.381 Atomic orbital electron populations 1.21393 0.75623 1.03932 1.01246 1.46970 1.06336 1.05709 1.78750 1.22249 0.86464 0.88958 1.03893 1.21885 0.96890 0.83053 0.98971 0.86386 1.20498 0.80247 0.82235 0.88845 1.90712 1.61361 1.53217 1.36289 1.45706 1.51859 1.17689 1.18807 1.21880 0.94828 0.98748 0.85489 1.19827 0.90117 0.90524 0.89656 1.42444 1.33985 1.44967 1.13720 1.19110 1.06865 1.14377 0.95700 0.91312 1.24642 0.99954 0.99882 0.95824 1.69644 1.42873 1.43969 1.01430 0.86258 0.82465 0.80985 0.77336 1.20652 1.22023 1.22002 1.21825 0.99253 0.97671 0.96963 1.21372 0.97543 0.93948 1.01842 1.21479 0.97636 0.98271 0.97691 1.21469 0.98650 0.95952 0.99229 1.21698 0.97362 0.95226 1.00881 1.44815 1.06803 1.06457 1.79203 1.15796 0.81766 0.84571 0.77248 1.90939 1.75945 1.20940 1.58930 0.89609 0.92178 0.92057 0.89701 0.88836 0.76071 0.93140 0.91356 0.78016 0.93648 0.93654 0.91825 0.90051 0.93705 0.92993 0.93152 0.90841 0.93184 0.92379 0.92219 0.72344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.07 11.21 59.85 0.67 1.74 16 2 N -0.64 -7.74 3.36 -186.73 -0.63 -8.37 16 3 C 0.11 1.07 7.32 -3.16 -0.02 1.05 16 4 C 0.10 1.27 4.17 -68.20 -0.28 0.99 16 5 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 6 C 0.50 7.80 6.93 -10.99 -0.08 7.72 16 7 O -0.54 -10.61 16.60 5.55 0.09 -10.52 16 8 N -0.69 -10.33 5.14 -60.30 -0.31 -10.64 16 9 C 0.12 1.91 4.32 -4.05 -0.02 1.90 16 10 C 0.19 3.04 0.40 -131.82 -0.05 2.99 16 11 N -0.71 -14.07 3.56 -47.23 -0.17 -14.24 16 12 C -0.23 -5.44 8.72 -15.06 -0.13 -5.58 16 13 H 0.07 1.68 6.75 -52.48 -0.35 1.33 16 14 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 15 N -0.93 -24.97 13.07 55.49 0.73 -24.24 16 16 Si 0.90 21.22 29.55 -169.99 -5.02 16.20 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 C -0.12 -1.85 4.56 -26.73 -0.12 -1.97 16 21 C -0.11 -1.68 5.77 -26.73 -0.15 -1.83 16 22 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 23 C -0.12 -1.53 5.75 -26.73 -0.15 -1.68 16 24 C -0.11 -1.49 4.65 -26.73 -0.12 -1.62 16 25 N -0.71 -10.26 5.63 -59.33 -0.33 -10.59 16 26 C 0.71 11.14 8.60 -88.40 -0.76 10.37 16 27 O -0.59 -11.35 17.29 5.29 0.09 -11.26 16 28 H 0.09 0.86 7.52 -51.93 -0.39 0.47 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.79 7.72 -51.93 -0.40 0.39 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 5.60 7.27 -40.82 -0.30 5.30 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.33 7.58 -51.93 -0.39 0.94 16 36 H 0.38 8.23 6.53 -40.82 -0.27 7.97 16 37 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 1.13 7.16 -51.93 -0.37 0.76 16 40 H 0.08 1.51 7.60 -51.93 -0.39 1.11 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.14 6.86 -51.93 -0.36 0.79 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.71 7.11 -51.93 -0.37 0.34 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.43 6.11 8.96 -40.82 -0.37 5.75 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -31.97 378.31 -9.08 -41.06 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -7.75 Total: 14.74 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: -1.48 Total: 12.15 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -0.71 Total: -68.08 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.18 Total: -21.77 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.97 -9.08 -41.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115665235.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.316 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds