Wall clock time and date at job start Fri Apr 10 2020 18:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47054 * 125.40972 * 2 1 4 4 C 1.54106 * 103.86040 * 180.22836 * 3 2 1 5 5 H 1.09001 * 110.54275 * 118.36414 * 4 3 2 6 6 C 1.50697 * 110.55392 * 241.17596 * 4 3 2 7 7 O 1.21284 * 119.99770 * 95.89610 * 6 4 3 8 8 N 1.34780 * 120.00104 * 275.90360 * 6 4 3 9 9 C 1.46495 * 120.00031 * 179.97438 * 8 6 4 10 10 C 1.52995 * 109.47437 * 175.97779 * 9 8 6 11 11 N 1.46509 * 109.46954 * 305.25169 * 10 9 8 12 12 C 1.36926 * 120.00002 * 300.07258 * 11 10 9 13 13 H 1.08007 * 120.00096 * 354.07119 * 12 11 10 14 14 C 1.38817 * 120.00220 * 174.07300 * 12 11 10 15 15 N 1.31614 * 119.99533 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00021 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.46965 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46766 * 119.99776 * 16 14 12 19 19 H 1.48496 * 109.47044 * 240.00133 * 16 14 12 20 20 C 1.52996 * 109.47637 * 185.25129 * 10 9 8 21 21 C 1.53001 * 109.47255 * 180.02562 * 20 10 9 22 22 C 1.53003 * 109.47227 * 59.99434 * 21 20 10 23 23 C 1.52996 * 109.47465 * 300.00437 * 22 21 20 24 24 C 1.53001 * 109.47255 * 59.99580 * 23 22 21 25 25 N 1.47059 * 103.86213 * 359.77480 * 4 3 2 26 26 C 1.33942 * 109.17732 * 359.97438 * 25 4 3 27 27 O 1.21591 * 123.04252 * 180.02562 * 26 25 4 28 28 H 1.09004 * 109.47166 * 180.21123 * 1 2 3 29 29 H 1.09006 * 109.47164 * 300.20585 * 1 2 3 30 30 H 1.08997 * 109.47694 * 60.21004 * 1 2 3 31 31 H 1.08998 * 110.74134 * 61.54508 * 3 2 1 32 32 H 1.08995 * 110.47844 * 298.78873 * 3 2 1 33 33 H 0.97000 * 119.99638 * 359.97438 * 8 6 4 34 34 H 1.08994 * 109.47415 * 295.97953 * 9 8 6 35 35 H 1.09002 * 109.46836 * 55.98030 * 9 8 6 36 36 H 0.97006 * 119.99478 * 120.07625 * 11 10 9 37 37 H 0.97008 * 119.99904 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.46927 * 299.99768 * 20 10 9 39 39 H 1.08995 * 109.47344 * 59.99608 * 20 10 9 40 40 H 1.08999 * 109.46734 * 299.99605 * 21 20 10 41 41 H 1.08996 * 109.47250 * 179.97438 * 21 20 10 42 42 H 1.08998 * 109.47014 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.46755 * 60.00044 * 22 21 20 44 44 H 1.09002 * 109.46814 * 299.99572 * 23 22 21 45 45 H 1.08995 * 109.47344 * 180.02562 * 23 22 21 46 46 H 1.08995 * 109.46737 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.46734 * 60.00395 * 24 23 22 48 48 H 0.96998 * 125.40930 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 -0.0060 5 1 4.2813 0.9451 -0.9051 6 6 4.4964 1.0681 1.2288 7 8 4.5491 0.3368 2.1950 8 7 5.1048 2.2703 1.2597 9 6 5.8295 2.6939 2.4602 10 6 6.5055 4.0414 2.1991 11 7 7.3502 3.9409 1.0062 12 6 8.3807 3.0400 0.9709 13 1 8.6317 2.4716 1.8544 14 6 9.1030 2.8571 -0.2003 15 7 8.7969 3.5494 -1.2770 16 14 10.5094 1.6285 -0.2482 17 1 10.6490 0.9840 1.0822 18 1 10.2261 0.5916 -1.2728 19 1 11.7705 2.3330 -0.5923 20 6 7.3682 4.4213 3.4042 21 6 8.0437 5.7691 3.1433 22 6 6.9746 6.8413 2.9229 23 6 6.1120 6.4613 1.7178 24 6 5.4365 5.1135 1.9787 25 7 3.5537 -0.8249 -0.0031 26 6 2.2411 -1.0917 0.0040 27 8 1.7945 -2.2226 0.0082 28 1 -0.3634 -1.0277 0.0038 29 1 -0.3634 0.5171 0.8882 30 1 -0.3634 0.5105 -0.8918 31 1 2.1449 1.7946 0.8962 32 1 2.1372 1.7942 -0.8949 33 1 5.0628 2.8550 0.4868 34 1 5.1305 2.7931 3.2906 35 1 6.5863 1.9500 2.7092 36 1 7.1793 4.5127 0.2415 37 1 9.3018 3.4219 -2.0954 38 1 6.7398 4.4961 4.2917 39 1 8.1295 3.6573 3.5615 40 1 8.6720 5.6947 2.2557 41 1 8.6579 6.0400 4.0020 42 1 7.4559 7.8013 2.7365 43 1 6.3462 6.9156 3.8104 44 1 6.7403 6.3870 0.8302 45 1 5.3507 7.2253 1.5605 46 1 4.8223 4.8427 1.1200 47 1 4.8081 5.1879 2.8663 48 1 4.2620 -1.4876 -0.0059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115665235.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:40 Heat of formation + Delta-G solvation = -69.122640 kcal Electronic energy + Delta-G solvation = -29199.675192 eV Core-core repulsion = 25288.857399 eV Total energy + Delta-G solvation = -3910.817793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.39143 -40.73486 -39.67463 -37.38382 -35.88666 -35.11298 -35.01954 -32.86139 -31.51909 -30.81580 -29.94489 -28.23608 -26.61600 -25.66147 -24.58330 -23.39283 -21.85297 -21.60033 -21.38472 -19.79390 -19.09488 -18.81318 -18.59266 -17.47710 -16.97971 -16.69950 -16.44142 -16.14648 -15.80037 -15.57786 -15.33800 -15.18995 -15.05185 -14.90906 -14.51178 -14.43263 -14.28597 -13.79649 -13.36753 -13.31214 -13.25326 -13.15539 -12.90767 -12.88059 -12.83394 -12.56339 -12.44943 -12.00896 -11.87808 -11.65708 -11.56048 -11.32127 -11.17841 -11.09813 -10.74053 -10.65037 -10.38049 -9.90281 -9.58253 -8.86474 -7.86180 -5.08722 1.36799 1.43109 1.49416 1.52901 1.70663 1.88477 2.28385 2.59715 2.92004 3.30586 3.47529 3.66975 3.86067 3.91223 3.96333 4.07944 4.15443 4.18358 4.43940 4.49388 4.52801 4.57376 4.70298 4.74004 4.80567 4.81493 4.86470 4.87444 4.94051 4.97019 5.01575 5.12844 5.22905 5.27568 5.48787 5.53436 5.55719 5.60380 5.62836 5.64009 5.73116 5.83488 5.97357 6.33166 6.37842 6.65402 7.27065 7.42301 7.47812 8.20718 8.47346 9.35990 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.004138 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.768927 B = 6764.227554 C = 8292.777827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.635 5.635 3 C 0.112 3.888 4 C 0.105 3.895 5 H 0.141 0.859 6 C 0.499 3.501 7 O -0.584 6.584 8 N -0.682 5.682 9 C 0.123 3.877 10 C 0.189 3.811 11 N -0.707 5.707 12 C -0.202 4.202 13 H 0.058 0.942 14 C -0.057 4.057 15 N -0.955 5.955 16 Si 0.936 3.064 17 H -0.282 1.282 18 H -0.301 1.301 19 H -0.300 1.300 20 C -0.117 4.117 21 C -0.107 4.107 22 C -0.109 4.109 23 C -0.113 4.113 24 C -0.107 4.107 25 N -0.718 5.718 26 C 0.693 3.307 27 O -0.635 6.635 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.412 0.588 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.379 0.621 37 H 0.246 0.754 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.979 7.198 3.335 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.373 5.373 3 C -0.011 4.011 4 C -0.005 4.005 5 H 0.158 0.842 6 C 0.283 3.717 7 O -0.464 6.464 8 N -0.332 5.332 9 C -0.003 4.003 10 C 0.099 3.901 11 N -0.347 5.347 12 C -0.335 4.335 13 H 0.076 0.924 14 C -0.250 4.250 15 N -0.606 5.606 16 Si 0.770 3.230 17 H -0.208 1.208 18 H -0.229 1.229 19 H -0.228 1.228 20 C -0.157 4.157 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.145 4.145 25 N -0.377 5.377 26 C 0.393 3.607 27 O -0.518 6.518 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.154 0.846 33 H 0.249 0.751 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.214 0.786 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.103 0.897 48 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -15.243 6.043 4.069 16.894 hybrid contribution 2.074 -1.052 -0.684 2.424 sum -13.168 4.991 3.385 14.484 Atomic orbital electron populations 1.21653 0.73786 1.03570 1.03709 1.47192 1.07430 1.05292 1.77425 1.22519 0.83857 0.88151 1.06552 1.22061 0.98692 0.81944 0.97776 0.84192 1.21080 0.79717 0.81627 0.89270 1.90697 1.63064 1.54397 1.38275 1.45643 1.51152 1.17799 1.18641 1.21731 0.94370 0.97540 0.86707 1.20042 0.90494 0.91543 0.88040 1.42454 1.33588 1.43810 1.14897 1.19173 1.06651 1.13109 0.94522 0.92428 1.25009 1.01944 1.01728 0.96308 1.69717 1.43871 1.45563 1.01497 0.85622 0.81010 0.79682 0.76716 1.20753 1.22879 1.22801 1.21816 0.98885 0.97081 0.97902 1.21311 0.98035 0.94708 1.00399 1.21461 0.97108 0.97438 0.98631 1.21443 0.98872 0.96760 0.97980 1.21682 0.96429 0.93754 1.02651 1.44915 1.06544 1.07473 1.78746 1.16129 0.82326 0.84880 0.77345 1.90891 1.76763 1.22997 1.61117 0.91438 0.90240 0.88977 0.88546 0.84580 0.75091 0.91487 0.95215 0.78633 0.94486 0.90989 0.94751 0.93988 0.92750 0.92346 0.90870 0.93699 0.90492 0.91064 0.89714 0.72811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.73 11.21 127.77 1.43 3.17 16 2 N -0.63 -13.95 3.36 -863.43 -2.90 -16.85 16 3 C 0.11 1.80 7.32 86.65 0.63 2.43 16 4 C 0.11 2.39 4.17 44.51 0.19 2.57 16 5 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 6 C 0.50 14.94 6.93 87.66 0.61 15.55 16 7 O -0.58 -22.95 16.60 -3.04 -0.05 -23.00 16 8 N -0.68 -19.20 5.14 -463.08 -2.38 -21.58 16 9 C 0.12 3.87 4.32 86.38 0.37 4.25 16 10 C 0.19 5.72 0.40 3.60 0.00 5.72 16 11 N -0.71 -27.73 3.56 -303.34 -1.08 -28.80 16 12 C -0.20 -9.68 8.72 84.04 0.73 -8.95 16 13 H 0.06 2.89 6.75 -2.91 -0.02 2.87 16 14 C -0.06 -2.95 5.50 84.86 0.47 -2.49 16 15 N -0.95 -51.78 13.07 21.65 0.28 -51.49 16 16 Si 0.94 44.49 29.55 68.60 2.03 46.52 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 20 C -0.12 -3.54 4.56 30.59 0.14 -3.40 16 21 C -0.11 -3.13 5.77 30.60 0.18 -2.96 16 22 C -0.11 -2.51 5.92 30.59 0.18 -2.33 16 23 C -0.11 -2.62 5.75 30.59 0.18 -2.44 16 24 C -0.11 -2.42 4.65 30.60 0.14 -2.28 16 25 N -0.72 -20.39 5.63 -460.33 -2.59 -22.98 16 26 C 0.69 21.55 8.60 179.57 1.55 23.10 16 27 O -0.64 -25.00 17.29 -4.00 -0.07 -25.07 16 28 H 0.07 1.30 7.52 -2.38 -0.02 1.28 16 29 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 1.39 7.72 -2.39 -0.02 1.37 16 32 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.41 10.36 7.27 -92.71 -0.67 9.69 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 35 H 0.03 1.17 7.58 -2.39 -0.02 1.15 16 36 H 0.38 16.03 6.53 -92.70 -0.61 15.42 16 37 H 0.25 13.36 8.31 -92.70 -0.77 12.58 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.03 1.22 7.16 -2.39 -0.02 1.20 16 40 H 0.04 1.56 7.60 -2.39 -0.02 1.54 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.45 7.11 -2.39 -0.02 1.43 16 47 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.43 12.42 8.96 -92.71 -0.83 11.59 16 Total: -1.00 -72.79 378.31 -1.08 -73.87 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -1.12 Total: 37.44 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: 6.80 Total: 31.95 kcal Atomic # 7 Polarization: -133.05 SS G_CDS: -8.66 Total: -141.71 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -0.12 Total: -48.06 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -72.79 -1.08 -73.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115665235.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.744 kcal (2) G-P(sol) polarization free energy of solvation -72.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds