Wall clock time and date at job start Fri Apr 10 2020 18:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 O 1.21283 * 120.00179 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00031 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00442 * 179.97438 * 7 5 4 9 9 C 1.53948 * 113.58331 * 252.71931 * 8 7 5 10 10 C 1.52905 * 86.78448 * 220.66060 * 9 8 7 11 11 C 1.52914 * 121.13761 * 150.61490 * 10 9 8 12 12 C 1.53950 * 86.78004 * 100.82121 * 11 10 9 13 13 N 1.46502 * 113.57794 * 139.33567 * 12 11 10 14 14 C 1.36939 * 120.00012 * 107.27597 * 13 12 11 15 15 H 1.08005 * 119.99441 * 0.02562 * 14 13 12 16 16 C 1.38810 * 119.99989 * 180.02562 * 14 13 12 17 17 N 1.31611 * 120.00247 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99599 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47287 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47117 * 120.00083 * 18 16 14 21 21 H 1.48500 * 109.46935 * 239.99673 * 18 16 14 22 22 C 1.52911 * 121.13785 * 259.17978 * 10 9 8 23 23 C 1.52914 * 88.04128 * 24.89535 * 10 9 8 24 24 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 25 25 C 1.34770 * 120.00256 * 84.99846 * 24 2 1 26 26 N 1.34777 * 119.99883 * 180.02562 * 25 24 2 27 27 O 1.21592 * 120.00149 * 359.97438 * 25 24 2 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 32 32 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 33 33 H 0.97004 * 119.99958 * 359.97438 * 7 5 4 34 34 H 1.09005 * 112.81968 * 23.91040 * 8 7 5 35 35 H 1.08998 * 113.66140 * 335.13318 * 9 8 7 36 36 H 1.08999 * 113.66289 * 106.18841 * 9 8 7 37 37 H 1.08998 * 113.66088 * 215.29698 * 11 10 9 38 38 H 1.09005 * 113.65667 * 346.35147 * 11 10 9 39 39 H 1.08998 * 113.58076 * 270.13067 * 12 11 10 40 40 H 0.96999 * 120.00015 * 287.28162 * 13 12 11 41 41 H 0.96999 * 120.00130 * 180.02562 * 17 16 14 42 42 H 1.09001 * 113.66284 * 13.64325 * 22 10 9 43 43 H 1.08992 * 113.66205 * 144.61565 * 22 10 9 44 44 H 1.08998 * 113.66196 * 220.62521 * 23 10 9 45 45 H 1.09007 * 113.74330 * 89.58724 * 23 10 9 46 46 H 0.97005 * 119.99374 * 264.99912 * 24 2 1 47 47 H 0.96997 * 120.00470 * 359.97438 * 26 25 24 48 48 H 0.97001 * 119.99898 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6148 1.3127 6 8 4.1450 -0.0210 0.4440 7 7 4.2150 -1.1805 2.3342 8 6 5.6750 -1.0775 2.3957 9 6 6.3996 -2.3969 2.0730 10 6 7.3576 -2.0496 3.2130 11 6 8.0504 -3.1446 4.0250 12 6 9.2979 -2.8723 3.1649 13 7 10.5496 -2.8901 3.9260 14 6 11.4198 -3.9384 3.7883 15 1 11.1835 -4.7518 3.1182 16 6 12.6056 -3.9555 4.5098 17 7 12.8933 -2.9645 5.3266 18 14 13.7929 -5.3853 4.3213 19 1 13.2407 -6.3625 3.3490 20 1 15.0999 -4.8816 3.8279 21 1 13.9825 -6.0480 5.6366 22 6 8.7389 -1.4568 2.9321 23 6 6.2415 -1.2000 3.8219 24 7 2.0184 -0.6905 -1.1962 25 6 2.1471 -0.0181 -2.3571 26 7 2.5959 -0.6535 -3.4577 27 8 1.8575 1.1616 -2.4118 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2055 33 1 3.7327 -1.6557 3.0288 34 1 6.0620 -0.2201 1.8450 35 1 5.7969 -3.2849 2.2633 36 1 6.8732 -2.4071 1.0913 37 1 8.1809 -2.8925 5.0773 38 1 7.6238 -4.1364 3.8751 39 1 9.3439 -3.4773 2.2595 40 1 10.7619 -2.1593 4.5275 41 1 13.7220 -2.9763 5.8305 42 1 8.8624 -1.1005 1.9094 43 1 9.0623 -0.7293 3.6765 44 1 6.5890 -0.2541 4.2374 45 1 5.5936 -1.7502 4.5043 46 1 2.2491 -1.6317 -1.1527 47 1 2.8267 -1.5946 -3.4143 48 1 2.6882 -0.1696 -4.2933 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121112288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:53 Heat of formation + Delta-G solvation = -53.578712 kcal Electronic energy + Delta-G solvation = -27115.730769 eV Core-core repulsion = 23205.587012 eV Total energy + Delta-G solvation = -3910.143757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68473 -41.00371 -40.06062 -37.35217 -36.56168 -35.21259 -34.69637 -33.61856 -31.86925 -31.30693 -28.90616 -26.74086 -26.64990 -26.04121 -24.20709 -23.04705 -21.82507 -21.41857 -21.26412 -19.46800 -19.27650 -18.63367 -18.16875 -17.92227 -17.13261 -16.89568 -16.59889 -16.08626 -16.03134 -15.85252 -15.44939 -15.41485 -15.18600 -14.94344 -14.43333 -13.88550 -13.65588 -13.61282 -13.51072 -13.34432 -13.13167 -12.96019 -12.87734 -12.84065 -12.76105 -12.30721 -12.22670 -12.04545 -11.93446 -11.88831 -11.38511 -11.36736 -11.04966 -10.89157 -10.81064 -10.67746 -10.58969 -9.93738 -9.85054 -8.97243 -7.94941 -5.23032 1.46821 1.47691 1.57710 1.74451 2.05293 2.28153 2.31516 2.56154 3.36646 3.52738 3.55335 3.67437 3.70132 3.73789 3.86307 3.90531 4.02031 4.28694 4.30554 4.34688 4.44005 4.57540 4.62154 4.69831 4.76760 4.82524 4.84962 4.88194 4.94594 5.00715 5.07390 5.10796 5.11253 5.17963 5.30661 5.37583 5.45022 5.57619 5.66246 5.70052 5.72173 5.93882 6.08371 6.27727 6.70505 7.16414 7.33100 7.41398 7.73945 8.11183 8.33843 9.28703 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.001936 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.514345 B =14461.780416 C =15058.566093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.170 3.830 3 H 0.052 0.948 4 C -0.138 4.138 5 C 0.502 3.498 6 O -0.581 6.581 7 N -0.706 5.706 8 C 0.131 3.869 9 C -0.115 4.115 10 C -0.092 4.092 11 C -0.136 4.136 12 C 0.146 3.854 13 N -0.730 5.730 14 C -0.241 4.241 15 H 0.076 0.924 16 C -0.080 4.080 17 N -0.971 5.971 18 Si 0.973 3.027 19 H -0.265 1.265 20 H -0.295 1.295 21 H -0.293 1.293 22 C -0.126 4.126 23 C -0.118 4.118 24 N -0.719 5.719 25 C 0.700 3.300 26 N -0.854 5.854 27 O -0.651 6.651 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.418 0.582 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.373 0.627 41 H 0.250 0.750 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.407 0.593 47 H 0.411 0.589 48 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.216 -0.438 -8.937 31.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.064 3.936 3 H 0.071 0.929 4 C -0.178 4.178 5 C 0.290 3.710 6 O -0.460 6.460 7 N -0.358 5.358 8 C 0.026 3.974 9 C -0.154 4.154 10 C -0.093 4.093 11 C -0.177 4.177 12 C 0.037 3.963 13 N -0.367 5.367 14 C -0.373 4.373 15 H 0.094 0.906 16 C -0.272 4.272 17 N -0.622 5.622 18 Si 0.802 3.198 19 H -0.189 1.189 20 H -0.223 1.223 21 H -0.220 1.220 22 C -0.165 4.165 23 C -0.156 4.156 24 N -0.375 5.375 25 C 0.398 3.602 26 N -0.422 5.422 27 O -0.534 6.534 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.256 0.744 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.128 0.872 46 H 0.242 0.758 47 H 0.242 0.758 48 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -29.991 0.767 -9.492 31.466 hybrid contribution 1.601 -0.901 0.168 1.845 sum -28.389 -0.134 -9.325 29.882 Atomic orbital electron populations 1.22135 0.93281 1.03449 1.02460 1.20543 0.94320 0.96103 0.82591 0.92938 1.22092 0.89778 1.05841 1.00070 1.21344 0.91384 0.77373 0.80869 1.90775 1.71460 1.43714 1.40067 1.45914 1.06670 1.56325 1.26856 1.22215 0.79890 0.97857 0.97456 1.23136 0.96534 0.98472 0.97213 1.21915 0.92242 0.97240 0.97883 1.23377 0.97625 0.97886 0.98775 1.21927 0.84616 0.95732 0.94031 1.42630 1.19539 1.24092 1.50487 1.19743 0.98571 0.99508 1.19440 0.90566 1.25590 1.00431 1.01049 1.00123 1.69822 1.25877 1.34172 1.32326 0.85072 0.78621 0.78933 0.77144 1.18920 1.22264 1.22020 1.23087 0.95034 0.97435 1.00898 1.23148 0.96599 1.00185 0.95684 1.44872 1.70659 1.13710 1.08238 1.16223 0.77708 0.84432 0.81868 1.42811 1.72453 1.15581 1.11388 1.90906 1.59952 1.16867 1.85681 0.90085 0.89653 0.94498 0.84211 0.84525 0.74427 0.89632 0.87669 0.92238 0.91645 0.91626 0.91267 0.79551 0.94085 0.91982 0.90997 0.91270 0.87181 0.75784 0.75831 0.75117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.48 71.98 0.68 -0.87 16 2 C 0.17 2.42 2.13 44.99 0.10 2.52 16 3 H 0.05 1.24 7.39 -2.39 -0.02 1.22 16 4 C -0.14 -0.92 5.24 29.85 0.16 -0.77 16 5 C 0.50 8.03 7.69 87.66 0.67 8.70 16 6 O -0.58 -15.98 14.95 -3.04 -0.05 -16.02 16 7 N -0.71 -8.92 5.35 -439.54 -2.35 -11.28 16 8 C 0.13 2.53 4.24 45.63 0.19 2.73 16 9 C -0.11 -2.36 7.64 30.88 0.24 -2.13 16 10 C -0.09 -2.31 1.11 -52.31 -0.06 -2.37 16 11 C -0.14 -4.31 7.64 30.89 0.24 -4.07 16 12 C 0.15 5.72 4.48 45.63 0.20 5.93 16 13 N -0.73 -37.15 5.40 -319.91 -1.73 -38.87 16 14 C -0.24 -13.43 9.97 84.03 0.84 -12.60 16 15 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 16 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 17 N -0.97 -59.93 13.06 21.65 0.28 -59.64 16 18 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 C -0.13 -4.11 7.59 30.89 0.23 -3.87 16 23 C -0.12 -2.25 7.59 30.88 0.23 -2.02 16 24 N -0.72 -10.88 4.22 -457.81 -1.93 -12.82 16 25 C 0.70 15.41 8.80 179.06 1.58 16.99 16 26 N -0.85 -11.34 8.88 -184.75 -1.64 -12.98 16 27 O -0.65 -21.28 16.84 -4.00 -0.07 -21.35 16 28 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.42 2.23 8.73 -92.71 -0.81 1.42 16 34 H 0.09 2.20 7.47 -2.38 -0.02 2.18 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.07 2.73 8.10 -2.39 -0.02 2.71 16 40 H 0.37 20.42 7.92 -92.71 -0.73 19.69 16 41 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.11 1.57 8.12 -2.38 -0.02 1.55 16 46 H 0.41 3.64 8.62 -92.70 -0.80 2.84 16 47 H 0.41 2.66 8.84 -92.71 -0.82 1.84 16 48 H 0.42 5.03 8.93 -92.71 -0.83 4.20 16 Total: -1.00 -85.04 396.63 -2.66 -87.69 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -2.97 Total: 32.96 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.77 Total: 4.02 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -7.37 Total: -135.59 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.11 Total: -37.37 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -85.04 -2.66 -87.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121112288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.113 kcal (2) G-P(sol) polarization free energy of solvation -85.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds