Wall clock time and date at job start Fri Apr 10 2020 18:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 175.00153 * 4 2 1 6 6 H 1.09001 * 109.46784 * 304.99833 * 5 4 2 7 7 C 1.52995 * 109.47332 * 184.99950 * 5 4 2 8 8 N 1.46493 * 109.47195 * 64.99647 * 5 4 2 9 9 C 1.34784 * 120.00284 * 205.00274 * 8 5 4 10 10 O 1.21532 * 119.99661 * 359.97438 * 9 8 5 11 11 C 1.47998 * 119.99935 * 180.02562 * 9 8 5 12 12 N 1.34188 * 126.70282 * 0.02562 * 11 9 8 13 13 N 1.28986 * 107.25375 * 180.02562 * 12 11 9 14 14 N 1.28719 * 108.98521 * 0.02562 * 13 12 11 15 15 C 1.46507 * 125.31687 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47100 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.46995 * 119.97759 * 15 14 13 18 18 C 1.53000 * 109.47080 * 239.97873 * 15 14 13 19 19 N 1.28868 * 109.36085 * 359.72810 * 14 13 12 20 20 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 2 1 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 30 30 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 32 32 H 1.09006 * 109.47383 * 294.99883 * 4 2 1 33 33 H 1.09007 * 109.47501 * 54.99867 * 4 2 1 34 34 H 1.08998 * 109.47243 * 179.97438 * 7 5 4 35 35 H 1.09001 * 109.47091 * 299.99695 * 7 5 4 36 36 H 1.09004 * 109.47260 * 59.99584 * 7 5 4 37 37 H 0.97007 * 119.99888 * 25.00459 * 8 5 4 38 38 H 1.08998 * 109.47010 * 60.00045 * 16 15 14 39 39 H 1.08998 * 109.47081 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47058 * 300.00066 * 16 15 14 41 41 H 1.09001 * 109.47009 * 60.00312 * 17 15 14 42 42 H 1.08998 * 109.47010 * 179.97438 * 17 15 14 43 43 H 1.08998 * 109.47234 * 300.00027 * 17 15 14 44 44 H 1.09001 * 109.47258 * 59.99824 * 18 15 14 45 45 H 1.09004 * 109.47089 * 180.02562 * 18 15 14 46 46 H 1.09007 * 109.46970 * 300.00105 * 18 15 14 47 47 H 0.97000 * 120.00040 * 94.99981 * 20 2 1 48 48 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3341 -0.1824 9 6 5.3748 -0.9910 0.2734 10 8 5.9876 -0.0839 -0.2545 11 6 5.9699 -1.7197 1.4159 12 7 5.4167 -2.7369 2.0941 13 7 6.2550 -3.0869 3.0098 14 7 7.2980 -2.3366 2.9316 15 6 8.4724 -2.4254 3.8030 16 6 8.2678 -3.5482 4.8219 17 6 9.7129 -2.7230 2.9582 18 6 8.6630 -1.0976 4.5388 19 7 7.1499 -1.4986 1.9639 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0074 2.3757 22 1 1.8919 1.0404 2.4243 23 6 2.6123 -0.6617 3.5090 24 7 2.7431 -0.0037 4.6414 25 14 3.0578 -2.4738 3.4249 26 1 1.8628 -3.2929 3.7507 27 1 3.5267 -2.8052 2.0554 28 1 4.1381 -2.7639 4.4016 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 5.1508 -1.1477 -2.6701 35 1 3.7723 -2.2741 -2.6698 36 1 3.6264 -0.6887 -3.4657 37 1 3.6647 -2.0585 0.2386 38 1 8.1320 -4.4942 4.2977 39 1 9.1417 -3.6146 5.4699 40 1 7.3841 -3.3361 5.4237 41 1 9.8586 -1.9229 2.2324 42 1 10.5867 -2.7886 3.6064 43 1 9.5771 -3.6689 2.4340 44 1 7.7793 -0.8855 5.1406 45 1 9.5371 -1.1634 5.1868 46 1 8.8088 -0.2975 3.8129 47 1 2.2490 -1.6317 1.1527 48 1 3.0706 -0.4598 5.4323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134403320.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:09 Heat of formation + Delta-G solvation = 121.237453 kcal Electronic energy + Delta-G solvation = -29944.069396 eV Core-core repulsion = 26073.798988 eV Total energy + Delta-G solvation = -3870.270408 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.201 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.08361 -39.48176 -37.64271 -36.93369 -34.35337 -33.26316 -32.54452 -31.97481 -30.71181 -29.04432 -27.82112 -27.74544 -26.42716 -25.09186 -24.26385 -23.27544 -21.43929 -20.69975 -20.45074 -19.77929 -17.76884 -17.50437 -17.13038 -16.58887 -16.11686 -14.90531 -14.68461 -14.51599 -14.43580 -14.13139 -14.06628 -13.76150 -13.30339 -13.06500 -13.02166 -12.75728 -12.60613 -12.56753 -12.35695 -12.07845 -12.06061 -11.98286 -11.97303 -11.75441 -11.71127 -11.45774 -11.16311 -11.10430 -10.82723 -10.68680 -10.49933 -10.18953 -10.06651 -10.04304 -9.86144 -9.47239 -9.25653 -8.72160 -8.48225 -7.17224 -5.66339 -3.04437 1.37713 1.85519 1.91020 3.18839 3.52018 3.60128 3.65654 3.73685 4.07095 4.32502 4.42454 4.45385 4.75338 4.84812 4.99501 5.15978 5.19389 5.26491 5.27929 5.32976 5.35211 5.44162 5.47800 5.53042 5.61452 5.64408 5.71755 5.77252 5.84246 5.86751 5.89737 5.94140 6.05242 6.07726 6.17835 6.26254 6.34640 6.38807 6.43569 6.48729 6.79421 6.88329 7.03956 7.79979 8.05716 8.42849 8.48195 8.61382 9.26924 9.99822 10.17678 11.48850 Molecular weight = 324.20amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.005429 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.854407 B = 5156.044658 C = 6429.759533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.174 3.826 3 H 0.056 0.944 4 C -0.136 4.136 5 C 0.149 3.851 6 H 0.092 0.908 7 C -0.164 4.164 8 N -0.681 5.681 9 C 0.627 3.373 10 O -0.525 6.525 11 C 0.132 3.868 12 N -0.244 5.244 13 N -0.064 5.064 14 N -0.128 5.128 15 C 0.177 3.823 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.162 4.162 19 N -0.250 5.250 20 N -0.742 5.742 21 C -0.239 4.239 22 H 0.086 0.914 23 C -0.002 4.002 24 N -0.936 5.936 25 Si 0.882 3.118 26 H -0.304 1.304 27 H -0.228 1.228 28 H -0.293 1.293 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.408 0.592 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.356 0.644 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.878 -7.353 -7.208 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 H 0.074 0.926 4 C -0.175 4.175 5 C 0.045 3.955 6 H 0.110 0.890 7 C -0.222 4.222 8 N -0.335 5.335 9 C 0.408 3.592 10 O -0.398 6.398 11 C -0.151 4.151 12 N -0.119 5.119 13 N -0.057 5.057 14 N -0.042 5.042 15 C 0.096 3.904 16 C -0.211 4.211 17 C -0.215 4.215 18 C -0.220 4.220 19 N -0.103 5.103 20 N -0.387 5.387 21 C -0.368 4.368 22 H 0.104 0.896 23 C -0.197 4.197 24 N -0.584 5.584 25 Si 0.716 3.284 26 H -0.233 1.233 27 H -0.155 1.155 28 H -0.220 1.220 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.247 0.753 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.190 0.810 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.383 -6.922 -6.954 15.028 hybrid contribution -0.144 -1.222 0.356 1.281 sum 11.239 -8.144 -6.598 15.368 Atomic orbital electron populations 1.22396 0.98809 1.00781 1.00427 1.20258 0.91948 0.95988 0.85349 0.92554 1.22267 0.93488 1.01856 0.99890 1.20984 0.92816 0.97504 0.84170 0.89032 1.22221 1.01956 1.01027 0.96995 1.45862 1.16536 1.37458 1.33660 1.15941 0.81749 0.81756 0.79793 1.90770 1.61838 1.29197 1.57979 1.25260 0.90230 0.98459 1.01167 1.77089 1.18493 1.12748 1.03583 1.78913 0.92388 1.15824 1.18582 1.50615 1.14759 1.18665 1.20152 1.21417 0.80312 0.99722 0.88921 1.22092 1.04200 0.96855 0.97969 1.22221 0.95132 1.03503 1.00642 1.22265 1.03951 0.94585 1.01208 1.74867 1.19298 1.14407 1.01747 1.42849 1.79581 1.09008 1.07230 1.18988 1.36941 0.95384 0.85526 0.89590 1.24751 1.01336 0.98140 0.95510 1.69754 1.52669 1.35632 1.00360 0.87031 0.76136 0.85591 0.79610 1.23284 1.15542 1.21995 0.94244 0.93666 0.92424 0.91586 0.89989 0.92218 0.92598 0.91556 0.75278 0.90681 0.89323 0.90384 0.90297 0.89245 0.91488 0.90934 0.89274 0.90229 0.81045 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.49 37.16 0.35 -2.40 16 2 C 0.17 3.17 2.89 -67.93 -0.20 2.98 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C -0.14 -1.92 4.43 -26.74 -0.12 -2.04 16 5 C 0.15 2.30 2.57 -67.94 -0.17 2.13 16 6 H 0.09 1.57 7.58 -51.93 -0.39 1.17 16 7 C -0.16 -2.04 9.48 37.15 0.35 -1.68 16 8 N -0.68 -12.47 3.80 -54.71 -0.21 -12.68 16 9 C 0.63 13.12 7.80 -12.26 -0.10 13.02 16 10 O -0.52 -11.78 16.76 5.34 0.09 -11.69 16 11 C 0.13 2.80 8.14 -156.25 -1.27 1.53 16 12 N -0.24 -5.20 6.28 32.10 0.20 -5.00 16 13 N -0.06 -1.27 11.28 60.35 0.68 -0.59 16 14 N -0.13 -2.23 3.72 0.53 0.00 -2.23 16 15 C 0.18 2.14 1.30 -131.82 -0.17 1.97 16 16 C -0.15 -1.55 7.90 37.16 0.29 -1.26 16 17 C -0.16 -1.43 8.66 37.16 0.32 -1.11 16 18 C -0.16 -1.84 8.66 37.16 0.32 -1.52 16 19 N -0.25 -4.94 11.85 32.11 0.38 -4.56 16 20 N -0.74 -16.74 3.65 -53.43 -0.19 -16.93 16 21 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 22 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 23 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 24 N -0.94 -30.21 13.97 55.49 0.78 -29.44 16 25 Si 0.88 22.78 23.98 -169.99 -4.08 18.70 16 26 H -0.30 -8.12 7.11 56.52 0.40 -7.71 16 27 H -0.23 -5.19 3.16 56.52 0.18 -5.01 16 28 H -0.29 -7.89 6.63 56.52 0.37 -7.52 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.41 7.55 4.91 -40.82 -0.20 7.35 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 47 H 0.36 7.79 3.78 -40.82 -0.15 7.64 16 48 H 0.25 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -36.22 378.54 -5.45 -41.66 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -8.16 Total: 12.45 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -0.64 Total: 4.60 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: 1.64 Total: -71.43 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.08 Total: 18.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.22 -5.45 -41.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134403320.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.899 kcal (2) G-P(sol) polarization free energy of solvation -36.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds