Wall clock time and date at job start Fri Apr 10 2020 18:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 175.00153 * 4 2 1 6 6 H 1.09001 * 109.46784 * 304.99833 * 5 4 2 7 7 C 1.52995 * 109.47332 * 184.99950 * 5 4 2 8 8 N 1.46493 * 109.47195 * 64.99647 * 5 4 2 9 9 C 1.34784 * 120.00284 * 205.00274 * 8 5 4 10 10 O 1.21532 * 119.99661 * 359.97438 * 9 8 5 11 11 C 1.47998 * 119.99935 * 180.02562 * 9 8 5 12 12 N 1.34188 * 126.70282 * 0.02562 * 11 9 8 13 13 N 1.28986 * 107.25375 * 180.02562 * 12 11 9 14 14 N 1.28719 * 108.98521 * 0.02562 * 13 12 11 15 15 C 1.46507 * 125.31687 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47100 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.46995 * 119.97759 * 15 14 13 18 18 C 1.53000 * 109.47080 * 239.97873 * 15 14 13 19 19 N 1.28868 * 109.36085 * 359.72810 * 14 13 12 20 20 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 2 1 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 30 30 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 32 32 H 1.09006 * 109.47383 * 294.99883 * 4 2 1 33 33 H 1.09007 * 109.47501 * 54.99867 * 4 2 1 34 34 H 1.08998 * 109.47243 * 179.97438 * 7 5 4 35 35 H 1.09001 * 109.47091 * 299.99695 * 7 5 4 36 36 H 1.09004 * 109.47260 * 59.99584 * 7 5 4 37 37 H 0.97007 * 119.99888 * 25.00459 * 8 5 4 38 38 H 1.08998 * 109.47010 * 60.00045 * 16 15 14 39 39 H 1.08998 * 109.47081 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47058 * 300.00066 * 16 15 14 41 41 H 1.09001 * 109.47009 * 60.00312 * 17 15 14 42 42 H 1.08998 * 109.47010 * 179.97438 * 17 15 14 43 43 H 1.08998 * 109.47234 * 300.00027 * 17 15 14 44 44 H 1.09001 * 109.47258 * 59.99824 * 18 15 14 45 45 H 1.09004 * 109.47089 * 180.02562 * 18 15 14 46 46 H 1.09007 * 109.46970 * 300.00105 * 18 15 14 47 47 H 0.97000 * 120.00040 * 94.99981 * 20 2 1 48 48 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3341 -0.1824 9 6 5.3748 -0.9910 0.2734 10 8 5.9876 -0.0839 -0.2545 11 6 5.9699 -1.7197 1.4159 12 7 5.4167 -2.7369 2.0941 13 7 6.2550 -3.0869 3.0098 14 7 7.2980 -2.3366 2.9316 15 6 8.4724 -2.4254 3.8030 16 6 8.2678 -3.5482 4.8219 17 6 9.7129 -2.7230 2.9582 18 6 8.6630 -1.0976 4.5388 19 7 7.1499 -1.4986 1.9639 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0074 2.3757 22 1 1.8919 1.0404 2.4243 23 6 2.6123 -0.6617 3.5090 24 7 2.7431 -0.0037 4.6414 25 14 3.0578 -2.4738 3.4249 26 1 1.8628 -3.2929 3.7507 27 1 3.5267 -2.8052 2.0554 28 1 4.1381 -2.7639 4.4016 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 5.1508 -1.1477 -2.6701 35 1 3.7723 -2.2741 -2.6698 36 1 3.6264 -0.6887 -3.4657 37 1 3.6647 -2.0585 0.2386 38 1 8.1320 -4.4942 4.2977 39 1 9.1417 -3.6146 5.4699 40 1 7.3841 -3.3361 5.4237 41 1 9.8586 -1.9229 2.2324 42 1 10.5867 -2.7886 3.6064 43 1 9.5771 -3.6689 2.4340 44 1 7.7793 -0.8855 5.1406 45 1 9.5371 -1.1634 5.1868 46 1 8.8088 -0.2975 3.8129 47 1 2.2490 -1.6317 1.1527 48 1 3.0706 -0.4598 5.4323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134403320.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:08 Heat of formation + Delta-G solvation = 94.262264 kcal Electronic energy + Delta-G solvation = -29945.239128 eV Core-core repulsion = 26073.798988 eV Total energy + Delta-G solvation = -3871.440140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.57981 -40.99649 -38.73736 -38.46097 -36.01954 -34.73722 -34.25567 -33.66663 -32.29059 -30.74386 -28.68695 -28.57907 -27.62498 -26.50573 -25.68865 -25.33715 -22.86094 -22.07864 -21.87204 -21.27510 -19.60690 -19.14456 -18.61511 -17.77719 -17.57704 -16.69302 -16.26089 -15.99024 -15.72076 -15.63248 -15.20609 -15.18658 -14.87976 -14.43583 -14.25520 -14.17150 -14.03549 -13.63788 -13.40254 -13.37944 -13.32041 -13.28512 -13.12249 -12.92018 -12.84605 -12.68495 -12.58788 -12.45572 -12.24702 -12.16967 -11.99370 -11.83963 -11.73760 -11.55157 -11.51303 -11.40507 -11.20026 -10.47845 -10.13214 -9.22296 -7.99187 -5.31930 -0.12096 0.25268 0.68658 1.42179 1.55469 1.57520 1.77457 2.04654 2.50071 2.92028 3.00370 3.32832 3.43846 3.52441 3.58363 3.69048 3.79762 4.07146 4.11189 4.28193 4.32926 4.37635 4.46495 4.52976 4.54732 4.56772 4.63862 4.65025 4.66463 4.82136 4.86969 4.88806 4.94980 5.04073 5.05432 5.10463 5.13642 5.14392 5.17474 5.36345 5.37664 5.50372 5.62925 5.79973 6.20087 6.27650 6.89612 7.06660 7.11210 7.88531 8.04704 9.19011 Molecular weight = 324.20amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.005429 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.854407 B = 5156.044658 C = 6429.759533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.035 0.965 4 C -0.122 4.122 5 C 0.141 3.859 6 H 0.070 0.930 7 C -0.153 4.153 8 N -0.674 5.674 9 C 0.620 3.380 10 O -0.550 6.550 11 C 0.111 3.889 12 N -0.267 5.267 13 N -0.075 5.075 14 N -0.110 5.110 15 C 0.154 3.846 16 C -0.149 4.149 17 C -0.148 4.148 18 C -0.159 4.159 19 N -0.259 5.259 20 N -0.741 5.741 21 C -0.209 4.209 22 H 0.048 0.952 23 C -0.070 4.070 24 N -0.989 5.989 25 Si 0.942 3.058 26 H -0.312 1.312 27 H -0.187 1.187 28 H -0.311 1.311 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.407 0.593 38 H 0.075 0.925 39 H 0.134 0.866 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.133 0.867 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.137 0.863 46 H 0.064 0.936 47 H 0.362 0.638 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.762 -9.361 -9.458 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.054 0.946 4 C -0.160 4.160 5 C 0.038 3.962 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.327 5.327 9 C 0.400 3.600 10 O -0.426 6.426 11 C -0.172 4.172 12 N -0.141 5.141 13 N -0.067 5.067 14 N -0.027 5.027 15 C 0.076 3.924 16 C -0.207 4.207 17 C -0.207 4.207 18 C -0.217 4.217 19 N -0.113 5.113 20 N -0.387 5.387 21 C -0.340 4.340 22 H 0.066 0.934 23 C -0.261 4.261 24 N -0.640 5.640 25 Si 0.775 3.225 26 H -0.242 1.242 27 H -0.112 1.112 28 H -0.240 1.240 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.246 0.754 38 H 0.094 0.906 39 H 0.153 0.847 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.151 0.849 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.155 0.845 46 H 0.083 0.917 47 H 0.197 0.803 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.225 -8.946 -9.292 17.772 hybrid contribution -0.362 -0.459 1.076 1.225 sum 11.863 -9.405 -8.216 17.225 Atomic orbital electron populations 1.22260 0.97011 1.01556 1.00698 1.20567 0.93132 0.95237 0.85562 0.94648 1.22223 0.92120 1.02801 0.98862 1.21279 0.93806 0.96425 0.84706 0.91206 1.22132 1.00919 1.02219 0.95812 1.46001 1.15548 1.37108 1.33999 1.16107 0.82447 0.81626 0.79810 1.90739 1.62647 1.30343 1.58888 1.25466 0.90931 0.98949 1.01846 1.76838 1.19737 1.13275 1.04255 1.78798 0.93089 1.16630 1.18206 1.51279 1.15129 1.16930 1.19352 1.22260 0.79794 1.00902 0.89424 1.22170 1.05141 0.95816 0.97599 1.22257 0.94803 1.02872 1.00729 1.22320 1.04648 0.93718 1.01030 1.74827 1.19085 1.15036 1.02396 1.42841 1.79705 1.09212 1.06907 1.18897 1.33857 0.93895 0.87377 0.93372 1.25469 1.02835 1.02472 0.95299 1.69935 1.55423 1.37439 1.01228 0.86119 0.74638 0.80295 0.81442 1.24240 1.11181 1.23972 0.90418 0.92577 0.95772 0.89576 0.85693 0.93967 0.90911 0.88543 0.75394 0.90596 0.84740 0.93022 0.91612 0.84854 0.91423 0.93911 0.84455 0.91722 0.80336 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 9.49 71.98 0.68 -4.18 16 2 C 0.16 5.67 2.89 44.99 0.13 5.80 16 3 H 0.04 1.39 8.08 -2.39 -0.02 1.37 16 4 C -0.12 -2.96 4.43 30.59 0.14 -2.83 16 5 C 0.14 4.03 2.57 44.99 0.12 4.15 16 6 H 0.07 2.33 7.58 -2.39 -0.02 2.32 16 7 C -0.15 -3.29 9.48 71.98 0.68 -2.60 16 8 N -0.67 -24.01 3.80 -445.28 -1.69 -25.70 16 9 C 0.62 26.13 7.80 86.83 0.68 26.81 16 10 O -0.55 -25.20 16.76 -3.82 -0.06 -25.26 16 11 C 0.11 4.77 8.14 137.15 1.12 5.89 16 12 N -0.27 -11.37 6.28 -52.37 -0.33 -11.70 16 13 N -0.07 -2.97 11.28 37.02 0.42 -2.55 16 14 N -0.11 -3.84 3.72 -152.25 -0.57 -4.41 16 15 C 0.15 3.53 1.30 3.60 0.00 3.54 16 16 C -0.15 -2.74 7.90 71.98 0.57 -2.17 16 17 C -0.15 -2.33 8.66 71.98 0.62 -1.70 16 18 C -0.16 -3.46 8.66 71.98 0.62 -2.84 16 19 N -0.26 -10.41 11.85 -52.32 -0.62 -11.03 16 20 N -0.74 -33.18 3.65 -322.95 -1.18 -34.36 16 21 C -0.21 -12.11 10.41 84.03 0.87 -11.23 16 22 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 23 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 24 N -0.99 -66.97 13.97 21.65 0.30 -66.67 16 25 Si 0.94 48.84 23.98 68.60 1.65 50.48 16 26 H -0.31 -16.48 7.11 99.48 0.71 -15.77 16 27 H -0.19 -8.29 3.16 99.48 0.31 -7.97 16 28 H -0.31 -17.06 6.63 99.48 0.66 -16.40 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.41 14.40 4.91 -92.70 -0.46 13.94 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.36 15.37 3.78 -92.71 -0.35 15.02 16 48 H 0.25 16.30 8.31 -92.71 -0.77 15.53 16 Total: -1.00 -86.24 378.54 4.33 -81.91 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -0.29 Total: 34.53 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.70 Total: 14.76 kcal Atomic # 7 Polarization: -152.76 SS G_CDS: -3.66 Total: -156.42 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.06 Total: -25.26 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.65 Total: 50.48 kcal Total: -86.24 4.33 -81.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134403320.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.175 kcal (2) G-P(sol) polarization free energy of solvation -86.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds