Wall clock time and date at job start Fri Apr 10 2020 18:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 175.00153 * 4 2 1 6 6 H 1.09001 * 109.46784 * 304.99833 * 5 4 2 7 7 C 1.52995 * 109.47332 * 184.99950 * 5 4 2 8 8 N 1.46493 * 109.47195 * 64.99647 * 5 4 2 9 9 C 1.34784 * 120.00284 * 205.00274 * 8 5 4 10 10 O 1.21286 * 119.99403 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00046 * 180.02562 * 9 8 5 12 12 O 1.42892 * 109.46780 * 179.97438 * 11 9 8 13 13 C 1.42899 * 114.00061 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.47609 * 179.97438 * 13 12 11 15 15 C 1.35315 * 126.12300 * 359.69419 * 14 13 12 16 16 C 1.39867 * 107.91961 * 179.90310 * 15 14 13 17 17 N 1.30833 * 108.20221 * 0.36582 * 16 15 14 18 18 N 1.34942 * 126.13045 * 180.02562 * 14 13 12 19 19 C 1.46501 * 126.03511 * 359.93421 * 18 14 13 20 20 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 2 1 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 30 30 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 31 31 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47383 * 294.99883 * 4 2 1 33 33 H 1.09007 * 109.47501 * 54.99867 * 4 2 1 34 34 H 1.09001 * 109.47091 * 299.99695 * 7 5 4 35 35 H 1.09004 * 109.47260 * 59.99584 * 7 5 4 36 36 H 1.08998 * 109.47243 * 179.97438 * 7 5 4 37 37 H 0.97007 * 119.99888 * 25.00459 * 8 5 4 38 38 H 1.08996 * 109.46744 * 299.99667 * 11 9 8 39 39 H 1.09001 * 109.47188 * 60.00179 * 11 9 8 40 40 H 1.08996 * 109.47329 * 300.00476 * 13 12 11 41 41 H 1.09001 * 109.46834 * 60.00356 * 13 12 11 42 42 H 1.08004 * 126.04241 * 0.03026 * 15 14 13 43 43 H 1.08004 * 125.90268 * 180.13684 * 16 15 14 44 44 H 1.09001 * 109.46813 * 90.01264 * 19 18 14 45 45 H 1.09005 * 109.47239 * 210.00467 * 19 18 14 46 46 H 1.08993 * 109.47427 * 330.00587 * 19 18 14 47 47 H 0.97000 * 120.00040 * 94.99981 * 20 2 1 48 48 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3341 -0.1824 9 6 5.3748 -0.9910 0.2734 10 8 5.9863 -0.0857 -0.2534 11 6 5.9807 -1.7330 1.4368 12 8 7.2691 -1.1889 1.7296 13 6 7.9336 -1.8245 2.8234 14 6 9.2757 -1.1748 3.0422 15 6 9.7937 -0.1524 2.3230 16 6 11.0529 0.1507 2.8510 17 7 11.2860 -0.6659 3.8463 18 7 10.1788 -1.5126 3.9863 19 6 10.0275 -2.5762 4.9823 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0074 2.3757 22 1 1.8919 1.0404 2.4243 23 6 2.6123 -0.6617 3.5090 24 7 2.7431 -0.0037 4.6414 25 14 3.0578 -2.4738 3.4249 26 1 1.8628 -3.2929 3.7507 27 1 3.5267 -2.8052 2.0554 28 1 4.1381 -2.7639 4.4016 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 3.7723 -2.2741 -2.6698 35 1 3.6264 -0.6887 -3.4657 36 1 5.1508 -1.1477 -2.6701 37 1 3.6647 -2.0585 0.2386 38 1 5.3355 -1.6298 2.3092 39 1 6.0816 -2.7880 1.1820 40 1 7.3290 -1.7227 3.7246 41 1 8.0746 -2.8816 2.5980 42 1 9.3179 0.3436 1.4898 43 1 11.7195 0.9227 2.4960 44 1 10.4195 -3.5100 4.5790 45 1 10.5787 -2.3104 5.8844 46 1 8.9720 -2.6997 5.2246 47 1 2.2490 -1.6317 1.1527 48 1 3.0706 -0.4598 5.4323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134717643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:24 Heat of formation + Delta-G solvation = 21.643459 kcal Electronic energy + Delta-G solvation = -28648.282319 eV Core-core repulsion = 24741.400440 eV Total energy + Delta-G solvation = -3906.881879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18147 -39.60972 -37.77223 -36.71077 -34.32947 -33.36783 -32.42411 -31.43250 -30.88842 -29.23340 -27.66358 -26.78910 -26.44608 -25.66114 -23.42946 -21.52103 -20.98494 -20.60977 -19.97895 -19.65445 -17.65914 -17.31142 -16.82332 -16.44786 -16.13341 -15.70301 -15.40495 -14.84553 -14.50358 -14.45550 -14.20779 -13.91522 -13.58275 -13.43863 -13.21235 -12.87459 -12.78352 -12.70775 -12.54067 -12.42836 -12.24903 -12.09328 -11.95165 -11.79212 -11.57523 -11.15434 -10.99941 -10.83483 -10.67944 -10.60719 -10.36326 -10.06533 -9.83060 -9.69104 -9.34562 -9.21193 -9.08309 -8.58339 -8.42860 -7.33899 -5.85676 -3.19853 1.83632 2.33050 2.92257 2.92643 3.01915 3.15826 3.19557 3.24528 4.05097 4.39422 4.50686 4.65674 4.90525 4.96981 5.00543 5.10091 5.14830 5.19594 5.23217 5.24984 5.28857 5.31000 5.43460 5.50417 5.55075 5.70786 5.72140 5.82077 5.83711 5.85691 6.00871 6.10819 6.24101 6.26860 6.29142 6.36394 6.44558 6.74385 6.74535 6.86250 6.93053 6.96876 7.07949 7.71102 7.89069 7.93269 8.32635 8.67247 9.09612 9.81005 10.01429 11.33415 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.003883 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.852036 B = 7208.616943 C = 8540.264325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.174 3.826 3 H 0.058 0.942 4 C -0.136 4.136 5 C 0.150 3.850 6 H 0.089 0.911 7 C -0.163 4.163 8 N -0.704 5.704 9 C 0.530 3.470 10 O -0.529 6.529 11 C 0.042 3.958 12 O -0.345 6.345 13 C 0.126 3.874 14 C 0.079 3.921 15 C -0.239 4.239 16 C 0.044 3.956 17 N -0.298 5.298 18 N -0.374 5.374 19 C 0.098 3.902 20 N -0.742 5.742 21 C -0.229 4.229 22 H 0.091 0.909 23 C 0.001 3.999 24 N -0.931 5.931 25 Si 0.876 3.124 26 H -0.285 1.285 27 H -0.283 1.283 28 H -0.291 1.291 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.397 0.603 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.157 0.843 43 H 0.185 0.815 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.353 0.647 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 -8.082 -7.850 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 H 0.076 0.924 4 C -0.175 4.175 5 C 0.046 3.954 6 H 0.107 0.893 7 C -0.221 4.221 8 N -0.359 5.359 9 C 0.315 3.685 10 O -0.405 6.405 11 C -0.038 4.038 12 O -0.262 6.262 13 C 0.047 3.953 14 C -0.048 4.048 15 C -0.268 4.268 16 C -0.142 4.142 17 N -0.120 5.120 18 N -0.159 5.159 19 C -0.043 4.043 20 N -0.386 5.386 21 C -0.360 4.360 22 H 0.109 0.891 23 C -0.194 4.194 24 N -0.579 5.579 25 Si 0.709 3.291 26 H -0.212 1.212 27 H -0.211 1.211 28 H -0.217 1.217 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.235 0.765 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.174 0.826 43 H 0.201 0.799 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.187 0.813 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.642 -7.546 -7.136 13.511 hybrid contribution -0.761 -1.754 0.063 1.913 sum 7.881 -9.300 -7.073 14.094 Atomic orbital electron populations 1.22391 0.98735 1.00752 1.00546 1.20265 0.91878 0.96073 0.85255 0.92412 1.22252 0.93954 1.01537 0.99725 1.20861 0.92440 0.97584 0.84535 0.89329 1.22210 1.01954 1.00739 0.97206 1.45998 1.17633 1.37891 1.34382 1.19755 0.81593 0.83737 0.83389 1.90670 1.61458 1.29791 1.58586 1.22427 0.85760 0.97002 0.98618 1.87956 1.29639 1.58754 1.49891 1.20605 0.88531 0.94865 0.91250 1.20510 0.92786 0.98725 0.92761 1.21377 0.96857 1.02273 1.06286 1.23895 0.97127 0.98786 0.94361 1.77327 1.07019 1.06203 1.21437 1.48347 1.12778 1.28463 1.26286 1.21868 1.03543 0.87831 0.91074 1.42832 1.79580 1.08853 1.07358 1.19103 1.35891 0.95633 0.85330 0.89117 1.24655 1.02236 0.96719 0.95759 1.69678 1.52890 1.35034 1.00342 0.86866 0.78435 0.87950 0.75850 1.21214 1.21084 1.21741 0.92368 0.94154 0.93724 0.91860 0.90213 0.92888 0.91850 0.92248 0.76510 0.89577 0.90866 0.90979 0.91521 0.82556 0.79855 0.90797 0.89125 0.89555 0.81332 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.49 37.16 0.35 -2.25 16 2 C 0.17 3.00 2.89 -67.93 -0.20 2.80 16 3 H 0.06 1.09 8.08 -51.93 -0.42 0.68 16 4 C -0.14 -1.82 4.43 -26.74 -0.12 -1.94 16 5 C 0.15 2.22 2.57 -67.94 -0.17 2.04 16 6 H 0.09 1.52 7.58 -51.93 -0.39 1.12 16 7 C -0.16 -1.98 9.48 37.15 0.35 -1.63 16 8 N -0.70 -11.63 3.80 -53.81 -0.20 -11.83 16 9 C 0.53 10.02 7.87 -10.98 -0.09 9.94 16 10 O -0.53 -11.60 16.16 -14.36 -0.23 -11.83 16 11 C 0.04 0.72 5.98 36.01 0.22 0.93 16 12 O -0.35 -6.13 9.17 -55.14 -0.51 -6.63 16 13 C 0.13 1.82 5.90 36.01 0.21 2.03 16 14 C 0.08 1.20 6.91 -82.26 -0.57 0.63 16 15 C -0.24 -3.73 10.14 -40.01 -0.41 -4.13 16 16 C 0.04 0.61 12.03 -17.37 -0.21 0.40 16 17 N -0.30 -4.49 12.58 30.62 0.39 -4.10 16 18 N -0.37 -5.22 4.01 -63.88 -0.26 -5.47 16 19 C 0.10 0.92 11.27 59.85 0.67 1.59 16 20 N -0.74 -15.37 3.65 -53.43 -0.19 -15.57 16 21 C -0.23 -5.95 10.41 -15.06 -0.16 -6.11 16 22 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 23 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 24 N -0.93 -27.77 13.97 55.49 0.78 -26.99 16 25 Si 0.88 19.29 25.12 -169.99 -4.27 15.02 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -5.17 4.59 56.52 0.26 -4.91 16 28 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 6.31 5.10 -40.82 -0.21 6.10 16 38 H 0.09 1.62 4.98 -51.93 -0.26 1.37 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.16 2.52 7.85 -52.48 -0.41 2.11 16 43 H 0.18 1.89 8.06 -52.48 -0.42 1.46 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.69 7.79 -51.93 -0.40 0.29 16 47 H 0.35 6.92 3.78 -40.82 -0.15 6.77 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -33.96 387.58 -6.74 -40.69 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -7.87 Total: 16.64 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.20 Total: 4.25 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: 0.50 Total: -63.97 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.74 Total: -18.47 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.27 Total: 15.02 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.96 -6.74 -40.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134717643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.336 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds