Wall clock time and date at job start Fri Apr 10 2020 18:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46871 * 2 1 4 4 C 1.53008 * 109.47057 * 119.99279 * 2 1 3 5 5 C 1.52995 * 109.47006 * 184.99852 * 4 2 1 6 6 H 1.08991 * 109.47339 * 305.00068 * 5 4 2 7 7 C 1.53001 * 109.46802 * 184.99819 * 5 4 2 8 8 N 1.46502 * 109.46833 * 65.00515 * 5 4 2 9 9 C 1.34776 * 119.99716 * 205.00024 * 8 5 4 10 10 O 1.21287 * 120.00163 * 359.97438 * 9 8 5 11 11 C 1.50705 * 119.99914 * 180.02562 * 9 8 5 12 12 O 1.42905 * 109.46857 * 180.02562 * 11 9 8 13 13 C 1.42899 * 113.99754 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47364 * 179.97438 * 13 12 11 15 15 C 1.35325 * 126.12378 * 0.02562 * 14 13 12 16 16 C 1.39868 * 107.91737 * 180.24396 * 15 14 13 17 17 N 1.30842 * 108.20327 * 359.55203 * 16 15 14 18 18 N 1.34941 * 126.13067 * 180.02562 * 14 13 12 19 19 C 1.46498 * 126.04014 * 359.97438 * 18 14 13 20 20 N 1.46491 * 109.47105 * 239.99014 * 2 1 3 21 21 C 1.36949 * 119.99756 * 85.00319 * 20 2 1 22 22 H 1.08000 * 119.99714 * 359.97438 * 21 20 2 23 23 C 1.38808 * 119.99724 * 179.97438 * 21 20 2 24 24 N 1.31625 * 119.99636 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00471 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47155 * 89.99728 * 25 23 21 27 27 H 1.48497 * 109.47380 * 209.99771 * 25 23 21 28 28 H 1.48501 * 109.47229 * 329.99898 * 25 23 21 29 29 H 1.08999 * 109.46648 * 300.00641 * 1 2 3 30 30 H 1.08996 * 109.46976 * 60.00725 * 1 2 3 31 31 H 1.09004 * 109.46631 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46597 * 65.00117 * 4 2 1 33 33 H 1.09002 * 109.47039 * 304.99981 * 4 2 1 34 34 H 1.08996 * 109.46938 * 60.00424 * 7 5 4 35 35 H 1.08999 * 109.46628 * 180.02562 * 7 5 4 36 36 H 1.08991 * 109.47377 * 300.00226 * 7 5 4 37 37 H 0.96997 * 120.00216 * 24.99550 * 8 5 4 38 38 H 1.08988 * 109.47321 * 59.99642 * 11 9 8 39 39 H 1.08998 * 109.46614 * 299.99204 * 11 9 8 40 40 H 1.09003 * 109.47231 * 59.99422 * 13 12 11 41 41 H 1.08998 * 109.47207 * 300.00116 * 13 12 11 42 42 H 1.08002 * 126.03725 * 359.97438 * 15 14 13 43 43 H 1.08007 * 125.89524 * 179.73435 * 16 15 14 44 44 H 1.08994 * 109.47427 * 90.00207 * 19 18 14 45 45 H 1.08999 * 109.47247 * 210.00793 * 19 18 14 46 46 H 1.09007 * 109.46720 * 330.00755 * 19 18 14 47 47 H 0.96997 * 120.00325 * 264.99957 * 20 2 1 48 48 H 0.96996 * 119.99979 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7211 1.2494 5 6 3.5649 -0.6132 1.3138 6 1 3.9954 -0.9922 0.3871 7 6 4.0851 -1.4380 2.4927 8 7 3.9480 0.7895 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9360 0.4340 0.5740 11 6 5.5555 2.6565 1.2710 12 8 6.8768 2.8574 0.7651 13 6 7.3496 4.2000 0.8916 14 6 8.7447 4.2964 0.3301 15 6 9.4574 3.2829 -0.2142 16 6 10.7000 3.7922 -0.6053 17 7 10.7285 5.0677 -0.3154 18 7 9.5072 5.4086 0.2800 19 6 9.1247 6.7382 0.7618 20 7 2.0184 -0.6908 -1.1960 21 6 2.1492 -0.0077 -2.3757 22 1 1.8920 1.0401 -2.4244 23 6 2.6124 -0.6621 -3.5088 24 7 2.7377 -0.0058 -4.6429 25 14 3.0566 -2.4746 -3.4248 26 1 1.8595 -3.2930 -3.7447 27 1 4.1324 -2.7666 -4.4059 28 1 3.5311 -2.8051 -2.0570 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7714 1.2058 33 1 1.6055 -0.2615 2.1371 34 1 3.8001 -2.4816 2.3598 35 1 5.1714 -1.3607 2.5389 36 1 3.6546 -1.0590 3.4195 37 1 3.3285 1.4130 1.9028 38 1 5.5299 2.9075 2.3312 39 1 4.8584 3.2956 0.7292 40 1 7.3614 4.4835 1.9440 41 1 6.6893 4.8710 0.3421 42 1 9.1269 2.2605 -0.3229 43 1 11.4970 3.2302 -1.0695 44 1 9.4173 6.8441 1.8064 45 1 9.6270 7.4994 0.1648 46 1 8.0452 6.8603 0.6727 47 1 2.2491 -1.6319 -1.1523 48 1 3.0610 -0.4631 -5.4348 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134717645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:31 Heat of formation + Delta-G solvation = 12.527313 kcal Electronic energy + Delta-G solvation = -27674.561210 eV Core-core repulsion = 23767.284025 eV Total energy + Delta-G solvation = -3907.277185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31132 -39.72965 -37.91921 -36.75756 -34.54609 -33.50891 -32.20905 -31.55619 -30.87761 -29.24159 -27.86593 -26.92221 -26.42711 -25.85639 -23.30297 -21.60078 -21.11266 -20.45426 -20.03019 -19.82780 -17.76747 -17.37674 -16.94825 -16.66590 -16.27275 -15.71581 -15.58014 -14.81249 -14.64499 -14.46295 -14.17225 -13.95635 -13.69394 -13.59834 -13.26589 -12.92789 -12.88979 -12.63239 -12.58813 -12.50962 -12.32937 -12.07101 -11.98382 -11.76352 -11.68542 -11.22189 -10.90899 -10.79434 -10.66296 -10.48782 -10.26380 -10.11745 -9.94792 -9.53131 -9.52376 -9.35456 -8.87820 -8.79671 -8.55795 -7.21285 -5.70911 -3.05961 1.69996 2.18104 2.81118 2.84918 2.93813 3.44035 3.47035 3.52687 3.84041 4.35052 4.46839 4.66180 4.72965 4.80878 4.86132 4.93284 4.97456 5.02533 5.03218 5.11572 5.15785 5.24835 5.31159 5.52480 5.58725 5.60243 5.71315 5.75754 5.81112 5.86679 5.99660 6.15519 6.17353 6.24647 6.30960 6.41765 6.53424 6.62390 6.68024 6.74936 6.82190 6.90462 6.97933 7.58759 7.71131 8.03430 8.47816 8.49150 9.26275 9.99369 10.18046 11.47675 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003021 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.940822 B = 9265.943652 C =10347.494818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.054 0.946 4 C -0.134 4.134 5 C 0.145 3.855 6 H 0.101 0.899 7 C -0.162 4.162 8 N -0.716 5.716 9 C 0.516 3.484 10 O -0.511 6.511 11 C 0.046 3.954 12 O -0.347 6.347 13 C 0.131 3.869 14 C 0.072 3.928 15 C -0.236 4.236 16 C 0.045 3.955 17 N -0.297 5.297 18 N -0.375 5.375 19 C 0.100 3.900 20 N -0.745 5.745 21 C -0.239 4.239 22 H 0.087 0.913 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.883 3.117 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.395 0.605 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.157 0.843 43 H 0.185 0.815 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 10.176 19.216 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.041 3.959 6 H 0.119 0.881 7 C -0.220 4.220 8 N -0.370 5.370 9 C 0.300 3.700 10 O -0.384 6.384 11 C -0.034 4.034 12 O -0.264 6.264 13 C 0.052 3.948 14 C -0.054 4.054 15 C -0.265 4.265 16 C -0.140 4.140 17 N -0.118 5.118 18 N -0.160 5.160 19 C -0.042 4.042 20 N -0.389 5.389 21 C -0.369 4.369 22 H 0.105 0.895 23 C -0.189 4.189 24 N -0.582 5.582 25 Si 0.713 3.287 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.202 1.202 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.229 0.771 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.175 0.825 43 H 0.202 0.798 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.257 10.836 18.574 22.696 hybrid contribution -0.702 -1.452 0.173 1.622 sum 6.555 9.385 18.747 21.966 Atomic orbital electron populations 1.22430 0.99020 1.00851 1.00288 1.20190 0.91739 0.95791 0.85540 0.92838 1.22225 0.93756 1.02198 0.99141 1.21000 0.95008 0.80156 0.99735 0.88140 1.22194 1.01715 1.00063 0.98067 1.45798 1.16207 1.11645 1.63305 1.19971 0.82300 0.89118 0.78616 1.90758 1.50731 1.55952 1.41008 1.22245 0.85679 0.95878 0.99589 1.88035 1.29620 1.25773 1.82924 1.20567 0.89523 0.85558 0.99133 1.20493 0.94408 0.88106 1.02435 1.21429 0.94716 1.01245 1.09118 1.23937 0.98453 0.91827 0.99827 1.77357 1.00828 1.15898 1.17749 1.48355 1.11510 1.07856 1.48289 1.21846 1.01380 0.80706 1.00260 1.42774 1.79581 1.09362 1.07140 1.18983 1.36974 0.95405 0.85567 0.89502 1.24638 1.01271 0.97440 0.95600 1.69694 1.52710 1.35566 1.00268 0.86568 0.77942 0.86917 0.77231 1.21331 1.21786 1.20213 0.94399 0.92421 0.93627 0.90695 0.91524 0.91825 0.92355 0.92918 0.77137 0.90404 0.89807 0.91435 0.91154 0.82488 0.79771 0.90808 0.89154 0.89678 0.80745 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.49 37.16 0.35 -2.32 16 2 C 0.18 3.09 2.84 -67.93 -0.19 2.90 16 3 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 4 C -0.13 -1.82 4.29 -26.73 -0.11 -1.93 16 5 C 0.14 2.14 2.52 -67.93 -0.17 1.97 16 6 H 0.10 1.99 7.05 -51.93 -0.37 1.62 16 7 C -0.16 -2.01 9.48 37.16 0.35 -1.66 16 8 N -0.72 -9.34 4.45 -53.81 -0.24 -9.58 16 9 C 0.52 8.02 7.87 -10.98 -0.09 7.93 16 10 O -0.51 -10.72 16.16 -14.36 -0.23 -10.95 16 11 C 0.05 0.52 6.42 36.01 0.23 0.75 16 12 O -0.35 -4.78 9.17 -55.14 -0.51 -5.29 16 13 C 0.13 1.32 5.90 36.00 0.21 1.53 16 14 C 0.07 0.90 6.91 -82.27 -0.57 0.33 16 15 C -0.24 -3.31 10.14 -40.01 -0.41 -3.71 16 16 C 0.04 0.57 12.03 -17.36 -0.21 0.37 16 17 N -0.30 -4.01 12.58 30.63 0.39 -3.63 16 18 N -0.37 -4.36 4.01 -63.89 -0.26 -4.62 16 19 C 0.10 0.66 11.27 59.85 0.67 1.33 16 20 N -0.75 -17.05 4.30 -53.42 -0.23 -17.28 16 21 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 22 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.90 13.97 55.49 0.78 -29.12 16 25 Si 0.88 22.83 27.74 -169.99 -4.71 18.12 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 28 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.40 3.70 8.60 -40.82 -0.35 3.35 16 38 H 0.08 0.57 8.14 -51.94 -0.42 0.15 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.16 2.36 7.85 -52.49 -0.41 1.94 16 43 H 0.19 1.76 8.06 -52.48 -0.42 1.34 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.37 7.79 -51.92 -0.40 -0.03 16 47 H 0.36 8.26 5.66 -40.82 -0.23 8.03 16 48 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -38.86 401.10 -7.24 -46.10 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -8.09 Total: 9.47 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.18 Total: 0.72 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: 0.44 Total: -64.23 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.74 Total: -16.23 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.71 Total: 18.12 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.86 -7.24 -46.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134717645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.632 kcal (2) G-P(sol) polarization free energy of solvation -38.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds