Wall clock time and date at job start Fri Apr 10 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46871 * 2 1 4 4 C 1.53008 * 109.47057 * 119.99279 * 2 1 3 5 5 C 1.52995 * 109.47006 * 184.99852 * 4 2 1 6 6 H 1.08991 * 109.47339 * 305.00068 * 5 4 2 7 7 C 1.53001 * 109.46802 * 184.99819 * 5 4 2 8 8 N 1.46502 * 109.46833 * 65.00515 * 5 4 2 9 9 C 1.34776 * 119.99716 * 205.00024 * 8 5 4 10 10 O 1.21287 * 120.00163 * 359.97438 * 9 8 5 11 11 C 1.50705 * 119.99914 * 180.02562 * 9 8 5 12 12 O 1.42905 * 109.46857 * 180.02562 * 11 9 8 13 13 C 1.42899 * 113.99754 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47364 * 179.97438 * 13 12 11 15 15 C 1.35325 * 126.12378 * 0.02562 * 14 13 12 16 16 C 1.39868 * 107.91737 * 180.24396 * 15 14 13 17 17 N 1.30842 * 108.20327 * 359.55203 * 16 15 14 18 18 N 1.34941 * 126.13067 * 180.02562 * 14 13 12 19 19 C 1.46498 * 126.04014 * 359.97438 * 18 14 13 20 20 N 1.46491 * 109.47105 * 239.99014 * 2 1 3 21 21 C 1.36949 * 119.99756 * 85.00319 * 20 2 1 22 22 H 1.08000 * 119.99714 * 359.97438 * 21 20 2 23 23 C 1.38808 * 119.99724 * 179.97438 * 21 20 2 24 24 N 1.31625 * 119.99636 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00471 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47155 * 89.99728 * 25 23 21 27 27 H 1.48497 * 109.47380 * 209.99771 * 25 23 21 28 28 H 1.48501 * 109.47229 * 329.99898 * 25 23 21 29 29 H 1.08999 * 109.46648 * 300.00641 * 1 2 3 30 30 H 1.08996 * 109.46976 * 60.00725 * 1 2 3 31 31 H 1.09004 * 109.46631 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46597 * 65.00117 * 4 2 1 33 33 H 1.09002 * 109.47039 * 304.99981 * 4 2 1 34 34 H 1.08996 * 109.46938 * 60.00424 * 7 5 4 35 35 H 1.08999 * 109.46628 * 180.02562 * 7 5 4 36 36 H 1.08991 * 109.47377 * 300.00226 * 7 5 4 37 37 H 0.96997 * 120.00216 * 24.99550 * 8 5 4 38 38 H 1.08988 * 109.47321 * 59.99642 * 11 9 8 39 39 H 1.08998 * 109.46614 * 299.99204 * 11 9 8 40 40 H 1.09003 * 109.47231 * 59.99422 * 13 12 11 41 41 H 1.08998 * 109.47207 * 300.00116 * 13 12 11 42 42 H 1.08002 * 126.03725 * 359.97438 * 15 14 13 43 43 H 1.08007 * 125.89524 * 179.73435 * 16 15 14 44 44 H 1.08994 * 109.47427 * 90.00207 * 19 18 14 45 45 H 1.08999 * 109.47247 * 210.00793 * 19 18 14 46 46 H 1.09007 * 109.46720 * 330.00755 * 19 18 14 47 47 H 0.96997 * 120.00325 * 264.99957 * 20 2 1 48 48 H 0.96996 * 119.99979 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7211 1.2494 5 6 3.5649 -0.6132 1.3138 6 1 3.9954 -0.9922 0.3871 7 6 4.0851 -1.4380 2.4927 8 7 3.9480 0.7895 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9360 0.4340 0.5740 11 6 5.5555 2.6565 1.2710 12 8 6.8768 2.8574 0.7651 13 6 7.3496 4.2000 0.8916 14 6 8.7447 4.2964 0.3301 15 6 9.4574 3.2829 -0.2142 16 6 10.7000 3.7922 -0.6053 17 7 10.7285 5.0677 -0.3154 18 7 9.5072 5.4086 0.2800 19 6 9.1247 6.7382 0.7618 20 7 2.0184 -0.6908 -1.1960 21 6 2.1492 -0.0077 -2.3757 22 1 1.8920 1.0401 -2.4244 23 6 2.6124 -0.6621 -3.5088 24 7 2.7377 -0.0058 -4.6429 25 14 3.0566 -2.4746 -3.4248 26 1 1.8595 -3.2930 -3.7447 27 1 4.1324 -2.7666 -4.4059 28 1 3.5311 -2.8051 -2.0570 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7714 1.2058 33 1 1.6055 -0.2615 2.1371 34 1 3.8001 -2.4816 2.3598 35 1 5.1714 -1.3607 2.5389 36 1 3.6546 -1.0590 3.4195 37 1 3.3285 1.4130 1.9028 38 1 5.5299 2.9075 2.3312 39 1 4.8584 3.2956 0.7292 40 1 7.3614 4.4835 1.9440 41 1 6.6893 4.8710 0.3421 42 1 9.1269 2.2605 -0.3229 43 1 11.4970 3.2302 -1.0695 44 1 9.4173 6.8441 1.8064 45 1 9.6270 7.4994 0.1648 46 1 8.0452 6.8603 0.6727 47 1 2.2491 -1.6319 -1.1523 48 1 3.0610 -0.4631 -5.4348 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134717645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:30 Heat of formation + Delta-G solvation = -16.870988 kcal Electronic energy + Delta-G solvation = -27675.836016 eV Core-core repulsion = 23767.284025 eV Total energy + Delta-G solvation = -3908.551991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.21932 -40.88969 -38.93567 -38.10839 -36.06896 -34.30501 -34.07703 -32.66171 -32.02219 -30.97443 -28.79681 -27.64645 -27.56690 -26.70684 -25.32199 -22.72384 -22.08543 -21.70083 -21.24948 -20.89704 -19.70797 -18.49403 -17.90953 -17.49869 -17.28689 -16.93921 -16.55147 -16.39333 -15.93968 -15.60376 -15.35314 -15.21225 -14.95293 -14.62382 -14.56278 -14.31494 -13.99874 -13.89401 -13.66316 -13.42134 -13.36158 -13.22624 -13.11092 -12.99031 -12.79112 -12.61150 -12.58291 -12.37381 -11.97517 -11.84878 -11.75948 -11.66195 -11.41644 -10.96367 -10.95349 -10.74912 -10.20220 -9.96255 -9.51008 -9.24767 -8.00549 -5.29796 0.78216 1.33498 1.38640 1.39051 1.44022 1.71680 1.80922 2.01687 2.49020 2.96395 3.33289 3.57529 3.68491 3.70507 3.79710 3.92818 4.11307 4.14906 4.22621 4.25528 4.34246 4.37511 4.40118 4.45920 4.55568 4.65772 4.68978 4.69932 4.78238 4.80156 4.85295 4.94346 5.03597 5.11320 5.15185 5.24479 5.35840 5.41726 5.64049 5.65473 5.66203 5.81848 5.91364 6.09629 6.24801 6.64694 6.70275 7.13011 7.41599 7.92747 8.06851 9.21669 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003021 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.940822 B = 9265.943652 C =10347.494818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.047 0.953 4 C -0.120 4.120 5 C 0.142 3.858 6 H 0.044 0.956 7 C -0.152 4.152 8 N -0.701 5.701 9 C 0.502 3.498 10 O -0.580 6.580 11 C 0.051 3.949 12 O -0.389 6.389 13 C 0.130 3.870 14 C 0.074 3.926 15 C -0.277 4.277 16 C 0.039 3.961 17 N -0.324 5.324 18 N -0.372 5.372 19 C 0.086 3.914 20 N -0.750 5.750 21 C -0.210 4.210 22 H 0.057 0.943 23 C -0.068 4.068 24 N -0.987 5.987 25 Si 0.945 3.055 26 H -0.275 1.275 27 H -0.305 1.305 28 H -0.258 1.258 29 H 0.081 0.919 30 H 0.025 0.975 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.086 0.914 37 H 0.417 0.583 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.204 0.796 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.112 0.888 47 H 0.360 0.640 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 11.079 23.221 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.158 4.158 5 C 0.037 3.963 6 H 0.062 0.938 7 C -0.210 4.210 8 N -0.356 5.356 9 C 0.289 3.711 10 O -0.459 6.459 11 C -0.028 4.028 12 O -0.307 6.307 13 C 0.052 3.948 14 C -0.055 4.055 15 C -0.306 4.306 16 C -0.145 4.145 17 N -0.146 5.146 18 N -0.157 5.157 19 C -0.053 4.053 20 N -0.394 5.394 21 C -0.342 4.342 22 H 0.075 0.925 23 C -0.259 4.259 24 N -0.639 5.639 25 Si 0.774 3.226 26 H -0.201 1.201 27 H -0.233 1.233 28 H -0.183 1.183 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.254 0.746 38 H 0.145 0.855 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.152 0.848 43 H 0.221 0.779 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.131 0.869 47 H 0.193 0.807 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.365 11.783 22.686 26.120 hybrid contribution -0.213 -1.587 -0.969 1.871 sum 5.152 10.197 21.717 24.539 Atomic orbital electron populations 1.22291 0.97233 1.01307 1.00874 1.20545 0.92830 0.95578 0.85199 0.93452 1.22144 0.92476 1.02648 0.98557 1.20884 0.95753 0.81271 0.98355 0.93813 1.22090 1.00325 1.00267 0.98319 1.45692 1.15941 1.11585 1.62348 1.20939 0.82140 0.90752 0.77309 1.90730 1.52814 1.58118 1.44197 1.22376 0.85081 0.92662 1.02719 1.87993 1.30895 1.28038 1.83813 1.20848 0.88042 0.84357 1.01537 1.20920 0.95440 0.87931 1.01174 1.21431 0.96196 1.01081 1.11928 1.24259 0.98688 0.91917 0.99678 1.77281 1.02370 1.16030 1.18909 1.48720 1.10592 1.09110 1.47230 1.22301 1.03287 0.78362 1.01344 1.42871 1.79751 1.09442 1.07296 1.18978 1.33705 0.94247 0.87236 0.92481 1.25394 1.03021 1.01925 0.95565 1.69868 1.55518 1.37400 1.01114 0.85535 0.77492 0.81942 0.77611 1.20075 1.23292 1.18254 0.90051 0.95600 0.93238 0.89892 0.86683 0.91110 0.94615 0.89543 0.74579 0.85466 0.87785 0.87568 0.88918 0.84831 0.77911 0.88766 0.88709 0.86915 0.80686 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.58 9.49 71.99 0.68 -3.90 16 2 C 0.17 5.41 2.84 45.00 0.13 5.54 16 3 H 0.05 1.61 7.56 -2.39 -0.02 1.59 16 4 C -0.12 -2.77 4.29 30.60 0.13 -2.64 16 5 C 0.14 3.94 2.52 44.99 0.11 4.06 16 6 H 0.04 1.75 7.05 -2.39 -0.02 1.73 16 7 C -0.15 -3.40 9.48 71.98 0.68 -2.71 16 8 N -0.70 -16.78 4.45 -442.53 -1.97 -18.75 16 9 C 0.50 15.34 7.87 87.66 0.69 16.03 16 10 O -0.58 -25.46 16.16 15.98 0.26 -25.20 16 11 C 0.05 1.01 6.42 71.24 0.46 1.47 16 12 O -0.39 -10.45 9.17 -129.94 -1.19 -11.64 16 13 C 0.13 2.31 5.90 71.23 0.42 2.73 16 14 C 0.07 1.81 6.91 41.41 0.29 2.09 16 15 C -0.28 -8.23 10.14 21.99 0.22 -8.00 16 16 C 0.04 1.05 12.03 85.23 1.02 2.07 16 17 N -0.32 -8.80 12.58 -57.02 -0.72 -9.52 16 18 N -0.37 -8.23 4.01 -356.04 -1.43 -9.65 16 19 C 0.09 0.92 11.27 127.77 1.44 2.36 16 20 N -0.75 -33.94 4.30 -322.93 -1.39 -35.33 16 21 C -0.21 -12.02 10.41 84.03 0.87 -11.15 16 22 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 23 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 24 N -0.99 -65.80 13.97 21.65 0.30 -65.50 16 25 Si 0.95 48.42 27.74 68.60 1.90 50.32 16 26 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 27 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 28 H -0.26 -12.21 6.52 99.48 0.65 -11.56 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.42 6.14 8.60 -92.71 -0.80 5.34 16 38 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.13 4.49 7.85 -2.91 -0.02 4.47 16 43 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 44 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.11 0.57 7.79 -2.38 -0.02 0.55 16 47 H 0.36 16.21 5.66 -92.71 -0.52 15.69 16 48 H 0.25 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -93.48 401.10 2.97 -90.52 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.43 Total: 30.52 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 7.62 Total: 4.23 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -5.20 Total: -138.75 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.93 Total: -36.84 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.90 Total: 50.32 kcal Total: -93.48 2.97 -90.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134717645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.646 kcal (2) G-P(sol) polarization free energy of solvation -93.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds