Wall clock time and date at job start Fri Apr 10 2020 18:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99985 * 2 1 4 4 C 1.52997 * 109.47401 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47377 * 64.99497 * 4 3 2 6 6 C 1.46505 * 119.99899 * 90.00269 * 5 4 3 7 7 C 1.50703 * 109.47064 * 270.00279 * 6 5 4 8 8 C 1.34515 * 125.79060 * 89.99944 * 7 6 5 9 9 C 1.41380 * 106.83832 * 179.97438 * 8 7 6 10 10 C 1.34506 * 106.84493 * 359.97438 * 9 8 7 11 11 O 1.34306 * 125.78568 * 269.69282 * 7 6 5 12 12 C 1.34773 * 120.00646 * 270.00434 * 5 4 3 13 13 O 1.21595 * 119.99560 * 359.97438 * 12 5 4 14 14 N 1.34780 * 120.00581 * 179.97438 * 12 5 4 15 15 C 1.46497 * 119.99868 * 180.02562 * 14 12 5 16 16 C 1.50701 * 109.47132 * 180.02562 * 15 14 12 17 17 O 1.21304 * 119.99585 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00383 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99928 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00138 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99511 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99547 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47070 * 60.00612 * 23 21 19 25 25 H 1.48500 * 109.47122 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47300 * 300.00270 * 23 21 19 27 27 H 1.09000 * 109.46916 * 60.00482 * 1 2 3 28 28 H 1.09003 * 109.46828 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46939 * 300.00070 * 1 2 3 30 30 H 1.09004 * 109.47531 * 59.99515 * 3 2 1 31 31 H 1.08999 * 109.47120 * 300.00062 * 3 2 1 32 32 H 1.09006 * 109.46817 * 304.99787 * 4 3 2 33 33 H 1.08996 * 109.47652 * 185.00037 * 4 3 2 34 34 H 1.09002 * 109.47068 * 30.00248 * 6 5 4 35 35 H 1.09001 * 109.47372 * 150.00336 * 6 5 4 36 36 H 1.07996 * 126.58016 * 0.03378 * 8 7 6 37 37 H 1.08006 * 126.57610 * 179.97438 * 9 8 7 38 38 H 1.08005 * 125.79499 * 180.02562 * 10 9 8 39 39 H 0.96993 * 119.99834 * 359.97438 * 14 12 5 40 40 H 1.09005 * 109.47133 * 299.99589 * 15 14 12 41 41 H 1.09002 * 109.47572 * 60.00296 * 15 14 12 42 42 H 0.97001 * 119.99780 * 359.97438 * 18 16 15 43 43 H 0.97005 * 119.99906 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.2864 1.4006 -2.4148 7 6 3.0416 1.5936 -3.2420 8 6 2.1467 2.5874 -3.0967 9 6 1.1456 2.3832 -4.0739 10 6 1.4888 1.2773 -4.7582 11 8 2.6405 0.8058 -4.2530 12 6 4.0949 -0.7755 -1.3355 13 8 3.8374 -1.4695 -0.3708 14 7 4.4995 -1.3462 -2.4875 15 6 4.6285 -2.8027 -2.5776 16 6 5.0935 -3.1813 -3.9601 17 8 5.2968 -2.3191 -4.7889 18 7 5.2837 -4.4777 -4.2758 19 6 5.7063 -4.8220 -5.5338 20 1 5.8872 -4.0544 -6.2717 21 6 5.9028 -6.1585 -5.8590 22 7 5.6831 -7.0924 -4.9611 23 14 6.4779 -6.6277 -7.5733 24 1 7.7940 -5.9954 -7.8442 25 1 6.6095 -8.1041 -7.6644 26 1 5.4870 -6.1569 -8.5740 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0889 34 1 4.6523 2.3703 -2.0772 35 1 5.0520 0.9135 -3.0187 36 1 2.1861 3.3882 -2.3731 37 1 0.2728 2.9975 -4.2392 38 1 0.9344 0.8440 -5.5776 39 1 4.7045 -0.7926 -3.2571 40 1 5.3551 -3.1493 -1.8427 41 1 3.6619 -3.2661 -2.3795 42 1 5.1215 -5.1670 -3.6130 43 1 5.8200 -8.0255 -5.1883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358285416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:52 Heat of formation + Delta-G solvation = -77.967253 kcal Electronic energy + Delta-G solvation = -28449.032994 eV Core-core repulsion = 24304.279913 eV Total energy + Delta-G solvation = -4144.753080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.59353 -40.01006 -38.27733 -37.62896 -35.70545 -34.37609 -33.59637 -32.99705 -31.34019 -31.12958 -29.68755 -27.39090 -26.35334 -25.73684 -24.41185 -22.69251 -21.80819 -20.87198 -19.58332 -19.52710 -18.33833 -17.87481 -17.52728 -16.69361 -16.15947 -15.97793 -15.67620 -15.48868 -15.35709 -14.78230 -14.65318 -14.54882 -14.20428 -13.82697 -13.65808 -13.38383 -13.23740 -12.92203 -12.78772 -12.58764 -12.23376 -12.11517 -12.03736 -11.75202 -11.73602 -11.57702 -11.13276 -11.05858 -10.46835 -10.25955 -10.02942 -9.80657 -9.56429 -9.55426 -8.91162 -8.57417 -8.53445 -8.41493 -8.03217 -6.45395 -3.87142 1.61822 2.46208 2.88256 2.97470 3.17631 3.24584 3.28669 3.54819 3.80563 3.84243 4.08180 4.23717 4.55818 4.75482 4.92195 4.97234 5.01218 5.03559 5.07613 5.17892 5.23434 5.27568 5.29252 5.33824 5.36579 5.67059 5.70205 5.77103 5.81241 6.00653 6.03391 6.11758 6.17027 6.37541 6.47431 6.89450 7.01305 7.15576 7.22443 7.51310 7.98876 8.26998 8.52711 8.93237 9.10926 9.46776 9.95291 10.71640 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.003230 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.885678 B = 8666.135911 C = 9484.823411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.363 6.363 3 C 0.034 3.966 4 C 0.136 3.864 5 N -0.624 5.624 6 C 0.186 3.814 7 C -0.030 4.030 8 C -0.202 4.202 9 C -0.224 4.224 10 C -0.028 4.028 11 O -0.158 6.158 12 C 0.711 3.289 13 O -0.574 6.574 14 N -0.724 5.724 15 C 0.129 3.871 16 C 0.431 3.569 17 O -0.596 6.596 18 N -0.551 5.551 19 C -0.304 4.304 20 H 0.104 0.896 21 C 0.025 3.975 22 N -0.896 5.896 23 Si 0.933 3.067 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.200 0.800 39 H 0.405 0.595 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 19.747 7.983 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C -0.044 4.044 4 C 0.012 3.988 5 N -0.361 5.361 6 C 0.062 3.938 7 C -0.082 4.082 8 C -0.222 4.222 9 C -0.243 4.243 10 C -0.096 4.096 11 O -0.052 6.052 12 C 0.412 3.588 13 O -0.450 6.450 14 N -0.383 5.383 15 C 0.001 3.999 16 C 0.216 3.784 17 O -0.482 6.482 18 N -0.186 5.186 19 C -0.433 4.433 20 H 0.122 0.878 21 C -0.177 4.177 22 N -0.536 5.536 23 Si 0.759 3.241 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.217 0.783 39 H 0.244 0.756 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.910 19.088 8.035 22.169 hybrid contribution -0.416 0.006 -0.932 1.020 sum -8.326 19.094 7.103 22.008 Atomic orbital electron populations 1.22682 0.82064 1.02530 0.99100 1.88153 1.18540 1.26306 1.95135 1.23150 0.94915 0.86086 1.00242 1.21391 0.92056 0.98416 0.86913 1.47043 1.72362 1.04665 1.12031 1.19923 0.90608 0.97670 0.85577 1.23016 1.00201 0.92740 0.92280 1.21467 0.96242 1.01567 1.02889 1.21759 1.02415 1.00330 0.99810 1.24109 0.87484 0.96767 1.01285 1.84170 1.34442 1.47208 1.39394 1.15703 0.78109 0.81350 0.83600 1.90917 1.56387 1.60740 1.36951 1.44917 1.71904 1.07773 1.13695 1.20759 1.02166 0.80174 0.96850 1.19792 0.85520 0.83992 0.89049 1.90493 1.57954 1.48915 1.50828 1.41773 1.57699 1.05356 1.13773 1.19669 1.41810 0.92605 0.89241 0.87799 1.25301 0.97313 0.95331 0.99777 1.69611 1.48302 1.01176 1.34542 0.85891 0.79369 0.77202 0.81588 1.19820 1.20900 1.19848 0.94675 0.89892 0.94658 0.93173 0.92639 0.88620 0.89149 0.86914 0.88493 0.83814 0.83747 0.78333 0.75586 0.90103 0.90170 0.77050 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.36 -5.34 9.49 -42.94 -0.41 -5.75 16 3 C 0.03 0.37 6.28 37.16 0.23 0.60 16 4 C 0.14 1.42 5.90 -4.05 -0.02 1.40 16 5 N -0.62 -8.16 2.44 -180.80 -0.44 -8.60 16 6 C 0.19 2.00 5.74 -5.19 -0.03 1.97 16 7 C -0.03 -0.37 6.69 -35.62 -0.24 -0.61 16 8 C -0.20 -2.09 8.79 -39.70 -0.35 -2.44 16 9 C -0.22 -2.35 10.91 -39.71 -0.43 -2.79 16 10 C -0.03 -0.33 12.09 29.41 0.36 0.03 16 11 O -0.16 -2.35 10.65 5.68 0.06 -2.29 16 12 C 0.71 12.53 7.90 -86.92 -0.69 11.84 16 13 O -0.57 -11.86 15.13 -2.43 -0.04 -11.90 16 14 N -0.72 -13.36 5.39 -66.41 -0.36 -13.72 16 15 C 0.13 2.57 6.15 -5.19 -0.03 2.54 16 16 C 0.43 10.28 7.85 -10.99 -0.09 10.19 16 17 O -0.60 -15.68 15.24 5.54 0.08 -15.59 16 18 N -0.55 -14.04 5.29 -10.96 -0.06 -14.10 16 19 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.58 5.46 -51.93 -0.28 0.29 16 32 H 0.10 1.17 7.42 -51.93 -0.39 0.78 16 33 H 0.09 0.57 7.89 -51.93 -0.41 0.16 16 34 H 0.11 0.75 7.89 -51.93 -0.41 0.34 16 35 H 0.10 1.12 6.36 -51.93 -0.33 0.79 16 36 H 0.14 1.12 7.89 -52.49 -0.41 0.71 16 37 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.20 1.80 8.06 -52.48 -0.42 1.37 16 39 H 0.41 7.45 5.17 -40.82 -0.21 7.24 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.40 9.74 7.90 -40.82 -0.32 9.42 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -35.24 368.49 -5.98 -41.22 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -5.66 Total: 16.71 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: -0.42 Total: 16.25 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.13 Total: -60.04 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.30 Total: -35.53 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.24 -5.98 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358285416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.743 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds