Wall clock time and date at job start Fri Apr 10 2020 18:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99985 * 2 1 4 4 C 1.52997 * 109.47401 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47377 * 64.99497 * 4 3 2 6 6 C 1.46505 * 119.99899 * 90.00269 * 5 4 3 7 7 C 1.50703 * 109.47064 * 270.00279 * 6 5 4 8 8 C 1.34515 * 125.79060 * 89.99944 * 7 6 5 9 9 C 1.41380 * 106.83832 * 179.97438 * 8 7 6 10 10 C 1.34506 * 106.84493 * 359.97438 * 9 8 7 11 11 O 1.34306 * 125.78568 * 269.69282 * 7 6 5 12 12 C 1.34773 * 120.00646 * 270.00434 * 5 4 3 13 13 O 1.21595 * 119.99560 * 359.97438 * 12 5 4 14 14 N 1.34780 * 120.00581 * 179.97438 * 12 5 4 15 15 C 1.46497 * 119.99868 * 180.02562 * 14 12 5 16 16 C 1.50701 * 109.47132 * 180.02562 * 15 14 12 17 17 O 1.21304 * 119.99585 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00383 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99928 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00138 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99511 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99547 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47070 * 60.00612 * 23 21 19 25 25 H 1.48500 * 109.47122 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47300 * 300.00270 * 23 21 19 27 27 H 1.09000 * 109.46916 * 60.00482 * 1 2 3 28 28 H 1.09003 * 109.46828 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46939 * 300.00070 * 1 2 3 30 30 H 1.09004 * 109.47531 * 59.99515 * 3 2 1 31 31 H 1.08999 * 109.47120 * 300.00062 * 3 2 1 32 32 H 1.09006 * 109.46817 * 304.99787 * 4 3 2 33 33 H 1.08996 * 109.47652 * 185.00037 * 4 3 2 34 34 H 1.09002 * 109.47068 * 30.00248 * 6 5 4 35 35 H 1.09001 * 109.47372 * 150.00336 * 6 5 4 36 36 H 1.07996 * 126.58016 * 0.03378 * 8 7 6 37 37 H 1.08006 * 126.57610 * 179.97438 * 9 8 7 38 38 H 1.08005 * 125.79499 * 180.02562 * 10 9 8 39 39 H 0.96993 * 119.99834 * 359.97438 * 14 12 5 40 40 H 1.09005 * 109.47133 * 299.99589 * 15 14 12 41 41 H 1.09002 * 109.47572 * 60.00296 * 15 14 12 42 42 H 0.97001 * 119.99780 * 359.97438 * 18 16 15 43 43 H 0.97005 * 119.99906 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.2864 1.4006 -2.4148 7 6 3.0416 1.5936 -3.2420 8 6 2.1467 2.5874 -3.0967 9 6 1.1456 2.3832 -4.0739 10 6 1.4888 1.2773 -4.7582 11 8 2.6405 0.8058 -4.2530 12 6 4.0949 -0.7755 -1.3355 13 8 3.8374 -1.4695 -0.3708 14 7 4.4995 -1.3462 -2.4875 15 6 4.6285 -2.8027 -2.5776 16 6 5.0935 -3.1813 -3.9601 17 8 5.2968 -2.3191 -4.7889 18 7 5.2837 -4.4777 -4.2758 19 6 5.7063 -4.8220 -5.5338 20 1 5.8872 -4.0544 -6.2717 21 6 5.9028 -6.1585 -5.8590 22 7 5.6831 -7.0924 -4.9611 23 14 6.4779 -6.6277 -7.5733 24 1 7.7940 -5.9954 -7.8442 25 1 6.6095 -8.1041 -7.6644 26 1 5.4870 -6.1569 -8.5740 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0889 34 1 4.6523 2.3703 -2.0772 35 1 5.0520 0.9135 -3.0187 36 1 2.1861 3.3882 -2.3731 37 1 0.2728 2.9975 -4.2392 38 1 0.9344 0.8440 -5.5776 39 1 4.7045 -0.7926 -3.2571 40 1 5.3551 -3.1493 -1.8427 41 1 3.6619 -3.2661 -2.3795 42 1 5.1215 -5.1670 -3.6130 43 1 5.8200 -8.0255 -5.1883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358285416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:51 Heat of formation + Delta-G solvation = -104.159472 kcal Electronic energy + Delta-G solvation = -28450.168774 eV Core-core repulsion = 24304.279913 eV Total energy + Delta-G solvation = -4145.888860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.47762 -41.32206 -40.08867 -38.68923 -36.82638 -36.23532 -35.28221 -33.87317 -33.36714 -32.03954 -30.72427 -28.93997 -27.25443 -26.83189 -26.16735 -23.70251 -22.66178 -21.80465 -21.36657 -20.81844 -20.10311 -19.37457 -18.46494 -17.70999 -17.49304 -17.12739 -16.92164 -16.72058 -16.62800 -16.39197 -16.14347 -15.88247 -15.57323 -15.20328 -15.06912 -14.76551 -14.25565 -13.90204 -13.70345 -13.64549 -13.53335 -13.52334 -13.37690 -12.96134 -12.89166 -12.86578 -12.63292 -12.46543 -12.13235 -11.99623 -11.55716 -11.23402 -10.84807 -10.54311 -10.44682 -10.23946 -10.08873 -9.72090 -9.35958 -8.50013 -6.00469 0.72460 1.38283 1.41957 1.52079 1.56617 1.84754 1.90337 2.06126 2.28979 2.34101 2.86302 3.04215 3.16777 3.18316 3.74988 3.96877 4.17290 4.17703 4.20576 4.27212 4.31757 4.40265 4.44080 4.45825 4.48332 4.51930 4.53952 4.59423 4.80726 4.91169 4.99664 5.01161 5.21435 5.35351 5.40193 5.47772 5.67250 5.83659 5.92810 6.28799 6.39447 6.48973 6.92603 7.03811 7.43117 7.58956 7.95169 8.66891 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.003230 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.885678 B = 8666.135911 C = 9484.823411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.406 6.406 3 C 0.031 3.969 4 C 0.129 3.871 5 N -0.614 5.614 6 C 0.184 3.816 7 C -0.055 4.055 8 C -0.188 4.188 9 C -0.221 4.221 10 C -0.055 4.055 11 O -0.199 6.199 12 C 0.707 3.293 13 O -0.610 6.610 14 N -0.727 5.727 15 C 0.143 3.857 16 C 0.434 3.566 17 O -0.621 6.621 18 N -0.559 5.559 19 C -0.338 4.338 20 H 0.086 0.914 21 C -0.010 4.010 22 N -0.917 5.917 23 Si 0.998 3.002 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.082 0.918 36 H 0.177 0.823 37 H 0.170 0.830 38 H 0.214 0.786 39 H 0.405 0.595 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.398 0.602 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 21.906 8.331 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.326 6.326 3 C -0.047 4.047 4 C 0.007 3.993 5 N -0.350 5.350 6 C 0.061 3.939 7 C -0.106 4.106 8 C -0.208 4.208 9 C -0.240 4.240 10 C -0.123 4.123 11 O -0.095 6.095 12 C 0.409 3.591 13 O -0.489 6.489 14 N -0.387 5.387 15 C 0.014 3.986 16 C 0.221 3.779 17 O -0.509 6.509 18 N -0.194 5.194 19 C -0.467 4.467 20 H 0.104 0.896 21 C -0.211 4.211 22 N -0.557 5.557 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.195 1.195 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.161 0.839 34 H 0.180 0.820 35 H 0.100 0.900 36 H 0.194 0.806 37 H 0.187 0.813 38 H 0.230 0.770 39 H 0.244 0.756 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.232 0.768 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.244 21.298 8.406 24.336 hybrid contribution -0.372 -0.576 -1.007 1.218 sum -8.617 20.723 7.399 23.631 Atomic orbital electron populations 1.22743 0.80961 1.02435 1.00329 1.88106 1.20085 1.28921 1.95440 1.23340 0.94669 0.84897 1.01767 1.21766 0.92449 1.00254 0.84788 1.47092 1.71115 1.03083 1.13698 1.20256 0.89883 0.99217 0.84557 1.23373 1.01316 0.93401 0.92536 1.21850 0.94962 1.01327 1.02683 1.22142 1.03013 0.99719 0.99093 1.24641 0.87335 0.97877 1.02420 1.84136 1.35757 1.48827 1.40777 1.15907 0.77732 0.82945 0.82559 1.90886 1.57941 1.62219 1.37879 1.44886 1.72530 1.06925 1.14316 1.20531 1.02215 0.81609 0.94253 1.20373 0.84124 0.83214 0.90153 1.90468 1.58744 1.49519 1.52161 1.41815 1.58201 1.05982 1.13435 1.19708 1.43997 0.93004 0.89993 0.89598 1.26139 0.96660 0.94700 1.03593 1.69683 1.48224 1.01604 1.36176 0.84922 0.78862 0.77384 0.76767 1.19377 1.19540 1.19530 0.94336 0.90835 0.92371 0.90401 0.92058 0.90728 0.83915 0.81972 0.90024 0.80593 0.81275 0.76990 0.75551 0.89017 0.90060 0.76789 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -11.63 9.49 -141.61 -1.34 -12.97 16 3 C 0.03 0.58 6.28 71.98 0.45 1.03 16 4 C 0.13 2.38 5.90 86.38 0.51 2.89 16 5 N -0.61 -15.19 2.44 -844.19 -2.06 -17.25 16 6 C 0.18 3.59 5.74 85.63 0.49 4.08 16 7 C -0.05 -1.27 6.69 24.83 0.17 -1.10 16 8 C -0.19 -3.36 8.79 22.19 0.20 -3.16 16 9 C -0.22 -4.17 10.91 22.19 0.24 -3.92 16 10 C -0.05 -1.30 12.09 66.97 0.81 -0.49 16 11 O -0.20 -5.97 10.65 -2.58 -0.03 -6.00 16 12 C 0.71 25.03 7.90 179.05 1.42 26.44 16 13 O -0.61 -25.63 15.13 3.36 0.05 -25.58 16 14 N -0.73 -27.43 5.39 -482.28 -2.60 -30.03 16 15 C 0.14 5.85 6.15 85.63 0.53 6.38 16 16 C 0.43 21.37 7.85 87.66 0.69 22.05 16 17 O -0.62 -33.75 15.24 -3.10 -0.05 -33.80 16 18 N -0.56 -29.34 5.29 -306.97 -1.62 -30.96 16 19 C -0.34 -19.15 9.68 84.04 0.81 -18.33 16 20 H 0.09 5.09 7.16 -2.91 -0.02 5.07 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 22 N -0.92 -49.88 13.05 21.66 0.28 -49.59 16 23 Si 1.00 42.56 29.55 68.60 2.03 44.58 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.07 5.46 -2.39 -0.01 1.06 16 32 H 0.07 1.73 7.42 -2.38 -0.02 1.71 16 33 H 0.14 1.09 7.89 -2.39 -0.02 1.07 16 34 H 0.16 1.47 7.89 -2.39 -0.02 1.45 16 35 H 0.08 1.86 6.36 -2.39 -0.02 1.84 16 36 H 0.18 1.87 7.89 -2.91 -0.02 1.85 16 37 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.21 3.90 8.06 -2.91 -0.02 3.87 16 39 H 0.41 15.35 5.17 -92.71 -0.48 14.87 16 40 H 0.09 3.56 8.14 -2.38 -0.02 3.54 16 41 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.40 20.18 7.90 -92.71 -0.73 19.45 16 43 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -78.69 368.49 2.53 -76.16 By element: Atomic # 1 Polarization: 47.88 SS G_CDS: -0.15 Total: 47.73 kcal Atomic # 6 Polarization: 29.70 SS G_CDS: 8.03 Total: 37.72 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -6.00 Total: -127.84 kcal Atomic # 8 Polarization: -76.99 SS G_CDS: -1.37 Total: -78.36 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -78.69 2.53 -76.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358285416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.998 kcal (2) G-P(sol) polarization free energy of solvation -78.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds