Wall clock time and date at job start Fri Apr 10 2020 18:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35052 * 125.56617 * 2 1 4 4 O 1.21302 * 127.28833 * 0.05622 * 3 2 1 5 5 C 1.49988 * 105.43252 * 180.02562 * 3 2 1 6 6 O 1.21296 * 127.28875 * 180.02562 * 5 3 2 7 7 N 1.35062 * 105.42726 * 0.02562 * 5 3 2 8 8 C 1.46497 * 125.56757 * 179.97438 * 7 5 3 9 9 C 1.50700 * 109.47128 * 90.02477 * 8 7 5 10 10 O 1.21279 * 120.00113 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99961 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99635 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47001 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46828 * 299.99604 * 13 12 11 15 15 C 1.53003 * 109.47482 * 59.99704 * 13 12 11 16 16 C 1.52997 * 109.47535 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47471 * 179.97438 * 16 13 12 18 18 H 1.08002 * 119.99869 * 359.97438 * 17 16 13 19 19 C 1.37876 * 119.99922 * 179.97438 * 17 16 13 20 20 N 1.31512 * 120.00388 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99824 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47360 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47210 * 120.00321 * 21 19 17 24 24 H 1.48501 * 109.47339 * 240.00023 * 21 19 17 25 25 C 1.34274 * 108.86837 * 0.22624 * 7 5 3 26 26 O 1.21484 * 124.30140 * 179.75077 * 25 7 5 27 27 H 1.09002 * 109.47055 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46869 * 119.97231 * 1 2 3 29 29 H 1.09000 * 109.47732 * 239.97467 * 1 2 3 30 30 H 1.09004 * 109.47268 * 330.02617 * 8 7 5 31 31 H 1.08997 * 109.47471 * 210.03024 * 8 7 5 32 32 H 0.96995 * 120.00015 * 359.72695 * 11 9 8 33 33 H 1.09005 * 109.47306 * 299.99972 * 12 11 9 34 34 H 1.09002 * 109.47518 * 60.00210 * 12 11 9 35 35 H 1.09005 * 109.46707 * 60.00379 * 14 13 12 36 36 H 1.08998 * 109.47134 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.47484 * 300.00633 * 14 13 12 38 38 H 1.08997 * 109.46624 * 60.00330 * 15 13 12 39 39 H 1.08998 * 109.46996 * 180.02562 * 15 13 12 40 40 H 1.08996 * 109.46790 * 300.00407 * 15 13 12 41 41 H 1.09005 * 109.46889 * 299.99675 * 16 13 12 42 42 H 1.09004 * 109.47073 * 59.99170 * 16 13 12 43 43 H 0.96998 * 120.00131 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2505 1.0986 0.0000 4 8 1.8929 2.2577 0.0009 5 6 3.6587 0.5823 -0.0006 6 8 4.6809 1.2354 -0.0004 7 7 3.5479 -0.7638 -0.0015 8 6 4.6656 -1.7108 -0.0030 9 6 5.0494 -2.0370 1.4174 10 8 4.4482 -1.5289 2.3400 11 7 6.0609 -2.8935 1.6624 12 6 6.4336 -3.2110 3.0431 13 6 7.6018 -4.1990 3.0417 14 6 7.1845 -5.4811 2.3184 15 6 8.7981 -3.5734 2.3215 16 6 7.9907 -4.5312 4.4836 17 6 9.1410 -5.5048 4.4822 18 1 9.5532 -5.8522 3.5464 19 6 9.6671 -5.9519 5.6756 20 7 9.1649 -5.5292 6.8152 21 14 11.0925 -7.1593 5.6738 22 1 11.4704 -7.4769 4.2733 23 1 12.2540 -6.5550 6.3746 24 1 10.6866 -8.4054 6.3723 25 6 2.2460 -1.0923 -0.0065 26 8 1.8277 -2.2328 -0.0128 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5134 -0.8903 29 1 -0.3634 -0.5142 0.8897 30 1 5.5180 -1.2661 -0.5166 31 1 4.3674 -2.6241 -0.5177 32 1 6.5392 -3.3030 0.9245 33 1 6.7312 -2.2977 3.5583 34 1 5.5813 -3.6564 3.5563 35 1 6.9072 -5.2448 1.2910 36 1 8.0169 -6.1848 2.3170 37 1 6.3323 -5.9268 2.8314 38 1 9.0953 -2.6601 2.8369 39 1 9.6301 -4.2775 2.3201 40 1 8.5207 -3.3372 1.2942 41 1 8.2879 -3.6179 4.9993 42 1 7.1383 -4.9770 4.9963 43 1 9.5353 -5.8435 7.6548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359762618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:59 Heat of formation + Delta-G solvation = -97.690564 kcal Electronic energy + Delta-G solvation = -27721.298417 eV Core-core repulsion = 23575.690069 eV Total energy + Delta-G solvation = -4145.608347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.77141 -40.01919 -39.62237 -39.05413 -37.26401 -36.84867 -35.60588 -33.80312 -32.21919 -30.84388 -27.90090 -27.06881 -26.57721 -26.10669 -25.78636 -23.13172 -22.50680 -22.07226 -20.59056 -18.83368 -18.41413 -17.98767 -17.51687 -17.01034 -16.95932 -16.46684 -16.17208 -15.73886 -15.47270 -15.26069 -15.05695 -14.80037 -14.50734 -13.95037 -13.79147 -13.64634 -13.24938 -13.16535 -13.10394 -12.83311 -12.80563 -12.13033 -12.10862 -11.47047 -11.22601 -11.06974 -11.03406 -10.86772 -10.69866 -10.62129 -10.50992 -10.47688 -10.29529 -9.94728 -9.89527 -9.23389 -8.96592 -8.93628 -8.39793 -6.03512 -4.05057 -0.12076 1.25432 1.57146 2.10474 2.11224 2.46419 3.16634 3.27844 3.36240 3.38161 3.43634 4.07833 4.41731 4.46941 4.52023 4.67090 4.73156 4.77007 4.82739 5.06922 5.18080 5.32095 5.40736 5.54277 5.66971 6.08681 6.11513 6.13313 6.18367 6.19350 6.30879 6.39739 6.57068 6.65000 6.72079 6.99071 7.01838 7.05230 7.07510 7.46704 7.59735 7.70890 7.94798 8.11159 8.36256 8.99916 9.58453 11.07972 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.029714 B = 0.002310 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.081095 B =12119.634579 C =12288.698255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.574 5.574 3 C 0.514 3.486 4 O -0.412 6.412 5 C 0.513 3.487 6 O -0.404 6.404 7 N -0.558 5.558 8 C 0.100 3.900 9 C 0.493 3.507 10 O -0.535 6.535 11 N -0.712 5.712 12 C 0.128 3.872 13 C -0.072 4.072 14 C -0.128 4.128 15 C -0.128 4.128 16 C 0.035 3.965 17 C -0.511 4.511 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.716 3.284 26 O -0.482 6.482 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.401 0.599 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.029 0.971 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.637 9.069 -18.892 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.324 5.324 3 C 0.294 3.706 4 O -0.277 6.277 5 C 0.293 3.707 6 O -0.267 6.267 7 N -0.307 5.307 8 C -0.024 4.024 9 C 0.276 3.724 10 O -0.412 6.412 11 N -0.364 5.364 12 C 0.006 3.994 13 C -0.073 4.073 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.002 4.002 17 C -0.549 4.549 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C 0.419 3.581 26 O -0.350 6.350 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.922 9.784 -18.023 25.362 hybrid contribution 1.029 -0.982 -0.046 1.424 sum -13.893 8.802 -18.069 24.433 Atomic orbital electron populations 1.22001 0.73042 1.05316 1.04690 1.46530 1.10037 1.07062 1.68766 1.20811 0.87622 0.85604 0.76519 1.90853 1.79374 1.16589 1.40867 1.20832 0.90945 0.82288 0.76613 1.90867 1.33379 1.62483 1.40010 1.46104 1.07523 1.08454 1.68573 1.21652 0.88793 0.94648 0.97302 1.20562 0.81013 0.80111 0.90713 1.90747 1.52836 1.52006 1.45571 1.46096 1.34237 1.45250 1.10792 1.21713 0.98205 0.99307 0.80211 1.20921 0.92400 0.93200 1.00776 1.21774 1.01788 0.97940 0.96994 1.21771 0.98799 1.00918 0.97015 1.19101 0.96666 0.96900 0.87554 1.21201 1.15916 1.25655 0.92158 0.92167 1.25020 0.97089 0.96648 0.95777 1.69970 1.41735 1.44361 0.97275 0.86588 0.82543 0.81133 0.78018 1.19788 1.21128 1.21123 1.15775 0.80615 0.85006 0.76699 1.91045 1.75951 1.18322 1.49632 0.88130 0.89547 0.89470 0.84967 0.84819 0.76310 0.91531 0.91536 0.95222 0.91311 0.93288 0.93290 0.91312 0.95214 0.96312 0.96314 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 10.95 59.85 0.66 1.08 16 2 N -0.57 -4.82 3.06 -128.65 -0.39 -5.21 16 3 C 0.51 5.09 8.31 -11.20 -0.09 5.00 16 4 O -0.41 -4.78 17.65 5.54 0.10 -4.68 16 5 C 0.51 5.61 8.31 -11.20 -0.09 5.51 16 6 O -0.40 -5.31 17.88 5.54 0.10 -5.21 16 7 N -0.56 -5.62 2.15 -122.51 -0.26 -5.88 16 8 C 0.10 0.85 6.34 -5.20 -0.03 0.82 16 9 C 0.49 6.46 7.90 -10.98 -0.09 6.38 16 10 O -0.53 -9.40 16.43 5.56 0.09 -9.31 16 11 N -0.71 -9.01 4.96 -60.29 -0.30 -9.31 16 12 C 0.13 2.12 4.56 -4.04 -0.02 2.10 16 13 C -0.07 -1.30 0.54 -154.50 -0.08 -1.38 16 14 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 15 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 16 C 0.04 0.84 4.04 -27.89 -0.11 0.73 16 17 C -0.51 -13.24 7.65 -34.44 -0.26 -13.50 16 18 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 21 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.72 7.30 8.32 -87.81 -0.73 6.57 16 26 O -0.48 -5.87 17.38 5.38 0.09 -5.78 16 27 H 0.10 0.36 7.76 -51.93 -0.40 -0.04 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.13 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.13 0.78 7.97 -51.93 -0.41 0.36 16 32 H 0.40 3.92 6.16 -40.82 -0.25 3.67 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 36 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 40 H 0.03 0.38 6.87 -51.93 -0.36 0.02 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -34.75 368.21 -5.37 -40.12 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.70 Total: -1.94 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -0.36 Total: 11.16 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.22 Total: -45.77 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: 0.38 Total: -24.99 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.75 -5.37 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359762618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.566 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds