Wall clock time and date at job start Fri Apr 10 2020 18:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47338 * 2 1 4 4 H 1.09002 * 109.47006 * 53.19643 * 3 2 1 5 5 N 1.46900 * 109.47354 * 293.19678 * 3 2 1 6 6 C 1.39215 * 111.00102 * 83.90407 * 5 3 2 7 7 C 1.36170 * 126.21943 * 50.47921 * 6 5 3 8 8 N 1.48037 * 126.09228 * 359.97438 * 7 6 5 9 9 O 1.21795 * 119.99952 * 54.68233 * 8 7 6 10 10 O 1.21800 * 119.99867 * 234.68235 * 8 7 6 11 11 C 1.39775 * 107.81166 * 179.84913 * 7 6 5 12 12 C 1.50696 * 125.83769 * 180.16896 * 11 7 6 13 13 N 1.30839 * 108.32415 * 0.42126 * 11 7 6 14 14 N 1.35243 * 126.22009 * 230.79179 * 6 5 3 15 15 C 1.46500 * 126.04465 * 0.02562 * 14 6 5 16 16 C 1.50695 * 109.47284 * 173.19218 * 3 2 1 17 17 O 1.21297 * 119.99868 * 120.00372 * 16 3 2 18 18 N 1.34776 * 120.00374 * 300.00303 * 16 3 2 19 19 C 1.46496 * 119.99832 * 359.97438 * 18 16 3 20 20 C 1.37098 * 120.00149 * 180.02562 * 18 16 3 21 21 H 1.07996 * 120.00181 * 23.90833 * 20 18 16 22 22 C 1.38950 * 119.99952 * 203.91213 * 20 18 16 23 23 N 1.31411 * 119.99702 * 10.79099 * 22 20 18 24 24 Si 1.86796 * 120.00025 * 190.78796 * 22 20 18 25 25 H 1.48493 * 109.47240 * 90.00135 * 24 22 20 26 26 H 1.48505 * 109.47049 * 210.00320 * 24 22 20 27 27 H 1.48497 * 109.47144 * 329.99628 * 24 22 20 28 28 H 1.09001 * 109.47480 * 59.55915 * 1 2 3 29 29 H 1.08997 * 109.47143 * 179.55848 * 1 2 3 30 30 H 1.09007 * 109.47289 * 299.55919 * 1 2 3 31 31 H 1.09002 * 109.47064 * 119.99940 * 2 1 3 32 32 H 1.09004 * 109.47177 * 239.99981 * 2 1 3 33 33 H 1.00895 * 111.00083 * 207.85483 * 5 3 2 34 34 H 1.08996 * 109.47131 * 270.32618 * 12 11 7 35 35 H 1.09002 * 109.47516 * 30.32112 * 12 11 7 36 36 H 1.08993 * 109.47499 * 150.32142 * 12 11 7 37 37 H 1.08990 * 109.47828 * 94.85274 * 15 14 6 38 38 H 1.09004 * 109.47019 * 214.86102 * 15 14 6 39 39 H 1.09005 * 109.46645 * 334.84937 * 15 14 6 40 40 H 1.09001 * 109.46968 * 93.63969 * 19 18 16 41 41 H 1.08993 * 109.47494 * 213.64387 * 19 18 16 42 42 H 1.08997 * 109.47652 * 333.64619 * 19 18 16 43 43 H 0.96999 * 119.99538 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5807 1.9902 0.8229 5 7 1.6890 2.0860 -1.2730 6 6 0.3894 2.5840 -1.2386 7 6 -0.1421 3.3794 -0.2696 8 7 0.5595 3.8697 0.9382 9 8 1.6099 4.4764 0.8281 10 8 0.0864 3.6665 2.0420 11 6 -1.4674 3.6526 -0.6199 12 6 -2.4316 4.5008 0.1687 13 7 -1.7293 3.0416 -1.7469 14 7 -0.5765 2.3608 -2.1586 15 6 -0.4413 1.5499 -3.3711 16 6 3.5375 1.4458 0.1684 17 8 4.2430 1.9361 -0.6879 18 7 4.0930 0.9040 1.2704 19 6 3.2409 0.3124 2.3049 20 6 5.4554 0.9076 1.4238 21 1 6.0550 1.6425 0.9075 22 6 6.0646 -0.0345 2.2436 23 7 5.3720 -1.0531 2.7015 24 14 7.8682 0.1468 2.6946 25 1 7.9889 0.9445 3.9413 26 1 8.4628 -1.1973 2.9075 27 1 8.5868 0.8371 1.5936 28 1 -0.3634 0.5207 -0.8860 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3634 0.5070 0.8940 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.3488 2.8134 -1.5045 34 1 -2.9684 3.8741 0.8807 35 1 -1.8807 5.2722 0.7069 36 1 -3.1429 4.9698 -0.5111 37 1 -0.7942 0.5380 -3.1728 38 1 -1.0349 1.9915 -4.1717 39 1 0.6061 1.5171 -3.6713 40 1 3.1375 -0.7572 2.1224 41 1 3.6934 0.4720 3.2835 42 1 2.2577 0.7822 2.2783 43 1 5.7974 -1.7109 3.2734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360099381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:04 Heat of formation + Delta-G solvation = 71.449762 kcal Electronic energy + Delta-G solvation = -29933.363089 eV Core-core repulsion = 25827.381967 eV Total energy + Delta-G solvation = -4105.981121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.158 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.62504 -41.26948 -39.23828 -36.53832 -36.15254 -34.84186 -34.42258 -32.81040 -31.46626 -30.14945 -29.85710 -27.69124 -26.62008 -25.84925 -24.71418 -24.15066 -21.76205 -21.01450 -20.65339 -19.37270 -18.80249 -18.43510 -17.23931 -17.14755 -16.88601 -16.60562 -15.83646 -15.32658 -15.00842 -14.48654 -14.34033 -14.00420 -13.85977 -13.81762 -13.50460 -13.19191 -13.03431 -12.70542 -12.60830 -12.49018 -11.91900 -11.73554 -11.72824 -11.39852 -11.37362 -11.26978 -11.04434 -11.03302 -10.88908 -10.86798 -10.50570 -10.36473 -10.35761 -9.75341 -9.47599 -9.09520 -9.03026 -8.53415 -7.77557 -6.37925 -3.96479 0.53489 1.19303 1.28927 1.91964 2.08488 3.13918 3.23870 3.28586 3.48607 3.70821 3.95038 4.10090 4.25652 4.64966 4.74227 4.81689 4.89847 4.98908 5.07040 5.16720 5.20269 5.23328 5.25119 5.32977 5.43451 5.46429 5.67968 5.76710 5.85125 5.94034 6.07785 6.19346 6.26672 6.41939 6.50793 6.65842 6.78578 6.89018 7.09967 7.13985 7.51157 7.83518 8.02618 8.37393 9.07397 9.30158 9.81954 10.65493 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.004113 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.476361 B = 6806.074602 C = 7239.748443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.089 3.911 4 H 0.055 0.945 5 N -0.614 5.614 6 C 0.375 3.625 7 C -0.232 4.232 8 N 0.062 4.938 9 O -0.152 6.152 10 O -0.147 6.147 11 C 0.140 3.860 12 C -0.082 4.082 13 N -0.270 5.270 14 N -0.341 5.341 15 C 0.100 3.900 16 C 0.446 3.554 17 O -0.579 6.579 18 N -0.430 5.430 19 C 0.107 3.893 20 C -0.306 4.306 21 H 0.101 0.899 22 C 0.034 3.966 23 N -0.880 5.880 24 Si 0.930 3.070 25 H -0.276 1.276 26 H -0.283 1.283 27 H -0.268 1.268 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.394 0.606 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.026 0.974 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.399 3.579 -6.289 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.023 4.023 4 H 0.072 0.928 5 N -0.257 5.257 6 C 0.145 3.855 7 C -0.330 4.330 8 N 0.585 4.415 9 O -0.369 6.369 10 O -0.366 6.366 11 C -0.029 4.029 12 C -0.141 4.141 13 N -0.093 5.093 14 N -0.122 5.122 15 C -0.040 4.040 16 C 0.233 3.767 17 O -0.464 6.464 18 N -0.148 5.148 19 C -0.037 4.037 20 C -0.434 4.434 21 H 0.119 0.881 22 C -0.170 4.170 23 N -0.519 5.519 24 Si 0.756 3.244 25 H -0.202 1.202 26 H -0.209 1.209 27 H -0.193 1.193 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.228 0.772 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.297 2.505 -8.534 18.566 hybrid contribution 1.652 0.753 1.695 2.484 sum -14.645 3.259 -6.838 16.488 Atomic orbital electron populations 1.21927 0.96217 1.01816 1.01226 1.21855 0.95235 0.94171 1.05033 1.21568 0.97334 0.96452 0.86938 0.92767 1.57125 0.98135 1.35621 1.34815 1.18524 0.89674 0.90018 0.87321 1.20999 0.96965 1.18805 0.96278 1.42476 0.99909 0.97972 1.01119 1.94632 1.10185 1.38679 1.93439 1.94527 1.69312 1.60829 1.11949 1.21991 0.91165 0.96558 0.93145 1.20390 0.96973 0.97970 0.98752 1.77627 1.04379 1.13477 1.13802 1.48539 1.06502 1.38010 1.19114 1.22138 1.05464 0.94192 0.82236 1.19445 0.87388 0.86444 0.83447 1.90518 1.62233 1.51225 1.42435 1.43420 1.06771 1.49791 1.14780 1.21715 0.90834 0.98049 0.93059 1.19685 0.80998 1.14429 1.28283 0.88123 1.25377 1.00351 0.94106 0.97164 1.69970 1.37209 1.11124 1.33626 0.85864 0.81798 0.77573 0.79139 1.20182 1.20894 1.19262 0.93414 0.92110 0.92991 0.88495 0.90410 0.77153 0.88704 0.90234 0.89476 0.89616 0.88712 0.87547 0.91402 0.91131 0.95552 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.24 37.16 0.34 -1.85 16 2 C -0.12 -2.12 5.21 -26.73 -0.14 -2.26 16 3 C 0.09 1.70 1.67 -68.87 -0.12 1.58 16 4 H 0.05 1.08 4.40 -51.93 -0.23 0.85 16 5 N -0.61 -10.31 6.06 -54.83 -0.33 -10.65 16 6 C 0.37 5.61 4.41 -153.41 -0.68 4.94 16 7 C -0.23 -3.62 6.22 -80.11 -0.50 -4.12 16 8 N 0.06 1.09 2.64 33.88 0.09 1.18 16 9 O -0.15 -3.00 18.93 -29.46 -0.56 -3.56 16 10 O -0.15 -2.60 19.16 -29.46 -0.56 -3.17 16 11 C 0.14 1.84 7.21 -82.44 -0.59 1.24 16 12 C -0.08 -0.79 10.44 36.00 0.38 -0.41 16 13 N -0.27 -3.46 12.56 33.65 0.42 -3.04 16 14 N -0.34 -4.24 3.11 -67.24 -0.21 -4.45 16 15 C 0.10 0.84 11.05 59.85 0.66 1.51 16 16 C 0.45 10.78 7.05 -10.99 -0.08 10.70 16 17 O -0.58 -15.52 15.38 5.54 0.09 -15.43 16 18 N -0.43 -10.96 3.01 -122.20 -0.37 -11.33 16 19 C 0.11 2.41 7.04 59.84 0.42 2.83 16 20 C -0.31 -8.45 9.26 -14.93 -0.14 -8.59 16 21 H 0.10 2.91 7.43 -52.49 -0.39 2.52 16 22 C 0.03 0.88 5.13 -17.47 -0.09 0.79 16 23 N -0.88 -22.95 10.66 55.50 0.59 -22.36 16 24 Si 0.93 20.57 29.57 -169.99 -5.03 15.55 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 28 H 0.05 0.65 4.53 -51.93 -0.24 0.42 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.75 4.51 -51.93 -0.23 1.51 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.39 7.19 7.51 -39.29 -0.30 6.89 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.63 7.99 -51.93 -0.41 0.22 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.88 7.99 -51.93 -0.41 0.46 16 40 H 0.07 1.54 6.35 -51.93 -0.33 1.21 16 41 H 0.07 1.67 7.25 -51.93 -0.38 1.30 16 42 H 0.03 0.52 5.81 -51.93 -0.30 0.22 16 43 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -31.51 355.41 -6.36 -37.87 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.31 Total: 7.68 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.53 Total: 6.35 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.19 Total: -50.64 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.04 Total: -22.16 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.51 -6.36 -37.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360099381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.317 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds