Wall clock time and date at job start Fri Apr 10 2020 18:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 114.00456 * 2 1 4 4 C 1.53006 * 109.47465 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47151 * 179.97438 * 4 3 2 6 6 C 1.34286 * 125.74935 * 125.00288 * 5 4 3 7 7 C 1.38106 * 107.40561 * 179.97438 * 6 5 4 8 8 C 1.47357 * 126.42431 * 179.97438 * 7 6 5 9 9 O 1.21628 * 120.00528 * 151.78646 * 8 7 6 10 10 N 1.34777 * 119.99766 * 331.77907 * 8 7 6 11 11 C 1.36984 * 120.00179 * 187.62421 * 10 8 7 12 12 H 1.07997 * 120.00242 * 217.63111 * 11 10 8 13 13 C 1.38973 * 119.99819 * 37.62839 * 11 10 8 14 14 N 1.31414 * 120.00241 * 6.15825 * 13 11 10 15 15 Si 1.86802 * 119.99996 * 186.16459 * 13 11 10 16 16 H 1.48504 * 109.46977 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47437 * 119.99968 * 15 13 11 18 18 H 1.48507 * 109.47091 * 240.00000 * 15 13 11 19 19 C 1.46504 * 120.00197 * 7.62426 * 10 8 7 20 20 C 1.50699 * 109.47014 * 90.06145 * 19 10 8 21 21 O 1.20827 * 119.99886 * 0.02562 * 20 19 10 22 22 O 1.34235 * 119.99994 * 180.02562 * 20 19 10 23 23 C 1.45195 * 116.99816 * 179.97438 * 22 20 19 24 24 C 1.41320 * 107.15659 * 359.97438 * 7 6 5 25 25 C 1.50700 * 125.98715 * 180.02562 * 24 7 6 26 26 N 1.30449 * 108.02605 * 359.76047 * 24 7 6 27 27 H 1.09001 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47180 * 300.00158 * 1 2 3 29 29 H 1.09007 * 109.46379 * 60.00111 * 1 2 3 30 30 H 1.09001 * 109.47163 * 299.99665 * 3 2 1 31 31 H 1.09001 * 109.47405 * 59.99627 * 3 2 1 32 32 H 1.09001 * 109.46956 * 300.00158 * 4 3 2 33 33 H 1.09004 * 109.46513 * 60.00055 * 4 3 2 34 34 H 1.08007 * 126.30062 * 359.94176 * 6 5 4 35 35 H 0.97000 * 120.00262 * 184.73312 * 14 13 11 36 36 H 1.08994 * 109.47446 * 210.06518 * 19 10 8 37 37 H 1.09002 * 109.46477 * 330.06488 * 19 10 8 38 38 H 1.09002 * 109.46415 * 179.97438 * 23 22 20 39 39 H 1.09000 * 109.47493 * 300.00266 * 23 22 20 40 40 H 1.09001 * 109.46936 * 60.00631 * 23 22 20 41 41 H 1.08995 * 109.47531 * 89.99873 * 25 24 7 42 42 H 1.09005 * 109.46868 * 210.00179 * 25 24 7 43 43 H 1.09001 * 109.47109 * 329.99566 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1845 0.0006 5 7 4.1315 2.5228 0.0000 6 6 5.0214 2.9858 0.8928 7 6 5.3274 4.2843 0.5357 8 6 6.2619 5.1861 1.2320 9 8 6.8418 6.0574 0.6125 10 7 6.4741 5.0454 2.5555 11 6 7.2180 5.9752 3.2326 12 1 7.8872 5.6619 4.0202 13 6 7.1115 7.3218 2.9060 14 7 6.2116 7.7173 2.0338 15 14 8.2476 8.5698 3.7068 16 1 9.1638 7.8741 4.6459 17 1 9.0423 9.2597 2.6590 18 1 7.4395 9.5679 4.4526 19 6 5.9092 3.8979 3.2701 20 6 6.8944 2.7578 3.2481 21 8 7.9594 2.8903 2.6929 22 8 6.5889 1.5951 3.8452 23 6 7.5853 0.5408 3.7838 24 6 4.5762 4.5862 -0.6226 25 6 4.5889 5.8946 -1.3702 26 7 3.8743 3.5318 -0.9347 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 1.6888 1.8463 -0.8900 31 1 1.6887 1.8463 0.8899 32 1 3.8568 0.6437 0.8909 33 1 3.8575 0.6434 -0.8892 34 1 5.4234 2.4428 1.7354 35 1 6.1822 8.6457 1.7543 36 1 5.7018 4.1790 4.3025 37 1 4.9837 3.5878 2.7850 38 1 7.2129 -0.3417 4.3041 39 1 7.7864 0.2910 2.7421 40 1 8.5048 0.8817 4.2598 41 1 5.3612 5.8666 -2.1388 42 1 3.6171 6.0556 -1.8371 43 1 4.7972 6.7081 -0.6752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360357732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:06 Heat of formation + Delta-G solvation = -67.603304 kcal Electronic energy + Delta-G solvation = -28941.935637 eV Core-core repulsion = 24797.631971 eV Total energy + Delta-G solvation = -4144.303666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.56617 -41.44011 -39.67080 -38.92867 -37.46200 -36.02359 -35.16535 -34.07054 -31.99361 -30.90544 -30.01610 -28.73883 -27.74828 -27.14546 -26.32474 -24.12078 -23.07285 -22.34266 -21.83698 -20.17255 -18.74523 -18.71385 -18.28993 -17.78694 -17.45643 -17.24533 -17.12500 -16.62016 -16.40917 -16.20510 -15.79962 -15.58821 -15.27057 -14.87087 -14.57515 -14.34202 -14.26142 -13.95092 -13.76250 -13.56084 -13.31274 -13.06820 -12.92260 -12.90650 -12.84046 -12.66004 -12.62290 -12.46252 -12.28137 -12.01123 -11.75997 -11.75447 -11.65122 -10.94206 -10.73809 -10.30223 -10.08044 -9.50850 -9.16795 -8.03116 -5.94942 0.55241 1.11024 1.28598 1.30470 1.44041 1.49117 1.57466 1.71831 2.38495 2.73720 2.93028 3.18708 3.32557 3.50260 3.60937 3.86825 3.87439 3.96286 4.15707 4.16987 4.22040 4.36865 4.38469 4.44840 4.49441 4.49854 4.56541 4.60929 4.63512 4.65752 4.75086 4.79655 4.85732 4.98150 5.07654 5.33417 5.50074 5.58861 5.83591 6.06290 6.19689 6.57212 6.78403 7.02539 7.22763 7.64058 8.41606 8.95531 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.004484 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.430410 B = 6242.760809 C = 7801.970735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.060 3.940 4 C 0.129 3.871 5 N -0.354 5.354 6 C 0.078 3.922 7 C -0.277 4.277 8 C 0.536 3.464 9 O -0.550 6.550 10 N -0.453 5.453 11 C -0.346 4.346 12 H 0.078 0.922 13 C 0.001 3.999 14 N -0.845 5.845 15 Si 0.978 3.022 16 H -0.263 1.263 17 H -0.294 1.294 18 H -0.272 1.272 19 C 0.099 3.901 20 C 0.436 3.564 21 O -0.524 6.524 22 O -0.356 6.356 23 C 0.025 3.975 24 C 0.109 3.891 25 C -0.060 4.060 26 N -0.307 5.307 27 H 0.107 0.893 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.192 0.808 35 H 0.258 0.742 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.142 0.858 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.664 -17.215 1.302 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.018 4.018 4 C 0.010 3.990 5 N -0.136 5.136 6 C -0.072 4.072 7 C -0.292 4.292 8 C 0.326 3.674 9 O -0.427 6.427 10 N -0.175 5.175 11 C -0.474 4.474 12 H 0.096 0.904 13 C -0.206 4.206 14 N -0.481 5.481 15 Si 0.804 3.196 16 H -0.187 1.187 17 H -0.221 1.221 18 H -0.197 1.197 19 C -0.028 4.028 20 C 0.278 3.722 21 O -0.412 6.412 22 O -0.272 6.272 23 C -0.068 4.068 24 C -0.058 4.058 25 C -0.118 4.118 26 N -0.130 5.130 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.151 0.849 33 H 0.122 0.878 34 H 0.209 0.791 35 H 0.068 0.932 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.948 -17.421 -0.044 20.576 hybrid contribution 1.462 1.334 0.745 2.115 sum -9.486 -16.088 0.701 18.689 Atomic orbital electron populations 1.22980 0.78710 1.04318 1.00904 1.87741 1.21981 1.26636 1.95677 1.22504 0.92207 0.85371 1.01722 1.21761 0.92920 0.77246 1.07121 1.48341 1.32990 1.12472 1.19761 1.23413 0.93858 0.94274 0.95616 1.20793 1.08943 0.96429 1.03049 1.17312 0.84016 0.84648 0.81447 1.90536 1.51149 1.35731 1.65317 1.43003 1.48543 1.20419 1.05517 1.19310 1.22116 0.86566 1.19383 0.90429 1.26006 0.97933 0.99333 0.97290 1.70120 1.32248 1.16564 1.29173 0.85116 0.78343 0.78471 0.77707 1.18693 1.22091 1.19703 1.21651 0.94088 0.84299 1.02739 1.25124 0.88270 0.84133 0.74707 1.90696 1.26238 1.82147 1.42077 1.86526 1.47670 1.22572 1.70479 1.23570 0.91401 0.88581 1.03234 1.22563 0.93304 0.95904 0.93991 1.20090 1.02834 0.89944 0.98973 1.76929 1.25472 0.96792 1.13805 0.87506 0.93126 0.93474 0.92559 0.92402 0.84938 0.87772 0.79146 0.93248 0.84987 0.85405 0.84040 0.92231 0.92789 0.90592 0.89244 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.33 10.70 -148.98 -1.59 -8.93 16 3 C 0.06 1.17 6.12 71.98 0.44 1.61 16 4 C 0.13 2.63 6.86 86.38 0.59 3.22 16 5 N -0.35 -10.71 3.65 -346.21 -1.26 -11.98 16 6 C 0.08 2.69 9.01 84.29 0.76 3.45 16 7 C -0.28 -12.38 5.72 -20.15 -0.12 -12.50 16 8 C 0.54 29.23 6.59 86.64 0.57 29.80 16 9 O -0.55 -34.61 12.87 -4.12 -0.05 -34.66 16 10 N -0.45 -23.28 2.06 -643.38 -1.33 -24.60 16 11 C -0.35 -19.41 9.35 84.06 0.79 -18.63 16 12 H 0.08 4.25 7.84 -2.91 -0.02 4.22 16 13 C 0.00 0.06 4.79 84.93 0.41 0.46 16 14 N -0.84 -50.68 10.43 21.67 0.23 -50.45 16 15 Si 0.98 45.53 29.56 68.60 2.03 47.55 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 C 0.10 3.71 5.50 85.63 0.47 4.18 16 20 C 0.44 15.59 5.91 71.24 0.42 16.01 16 21 O -0.52 -23.48 16.18 21.96 0.36 -23.13 16 22 O -0.36 -9.40 10.55 -51.46 -0.54 -9.94 16 23 C 0.03 0.51 10.56 113.37 1.20 1.70 16 24 C 0.11 4.51 7.26 43.52 0.32 4.83 16 25 C -0.06 -2.34 9.82 71.24 0.70 -1.64 16 26 N -0.31 -11.01 12.34 -46.66 -0.58 -11.59 16 27 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.13 1.97 8.06 -2.39 -0.02 1.95 16 33 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.19 5.74 4.11 -2.91 -0.01 5.73 16 35 H 0.26 14.93 8.32 -92.71 -0.77 14.16 16 36 H 0.13 4.40 8.04 -2.39 -0.02 4.39 16 37 H 0.13 4.19 4.64 -2.39 -0.01 4.18 16 38 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 40 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 41 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 43 H 0.06 2.98 7.39 -2.39 -0.02 2.96 16 Total: -1.00 -81.84 366.09 6.08 -75.76 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.03 Total: 17.88 kcal Atomic # 6 Polarization: 26.30 SS G_CDS: 7.79 Total: 34.09 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -2.94 Total: -98.62 kcal Atomic # 8 Polarization: -74.82 SS G_CDS: -1.84 Total: -76.66 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -81.84 6.08 -75.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360357732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.157 kcal (2) G-P(sol) polarization free energy of solvation -81.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds