Wall clock time and date at job start Fri Apr 10 2020 18:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47466 * 264.98997 * 3 2 1 5 5 H 1.48496 * 109.47405 * 24.99582 * 3 2 1 6 6 H 1.48507 * 109.46893 * 144.98861 * 3 2 1 7 7 C 1.37878 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99711 * 187.45568 * 7 2 1 9 9 C 1.50700 * 120.00209 * 7.44712 * 7 2 1 10 10 O 1.42903 * 113.25067 * 52.40682 * 9 7 2 11 11 C 1.53512 * 114.17046 * 185.35271 * 9 7 2 12 12 N 1.47487 * 87.93038 * 139.86488 * 11 9 7 13 13 C 1.46899 * 110.99929 * 221.29701 * 12 11 9 14 14 C 1.53001 * 109.46685 * 169.99668 * 13 12 11 15 15 H 1.09002 * 109.47137 * 60.00562 * 14 13 12 16 16 O 1.42895 * 109.47701 * 300.00055 * 14 13 12 17 17 C 1.53009 * 109.46694 * 179.97438 * 14 13 12 18 18 O 1.42901 * 109.46961 * 185.00416 * 17 14 13 19 19 C 1.42900 * 113.99977 * 180.02562 * 18 17 14 20 20 C 1.50694 * 109.47096 * 179.97438 * 19 18 17 21 21 C 1.38221 * 120.01744 * 359.97438 * 20 19 18 22 22 C 1.38214 * 120.02881 * 180.27511 * 21 20 19 23 23 C 1.38263 * 120.05309 * 359.49343 * 22 21 20 24 24 C 1.38178 * 120.02620 * 0.51208 * 23 22 21 25 25 C 1.38439 * 120.01331 * 180.02562 * 20 19 18 26 26 F 1.35103 * 120.02494 * 359.96107 * 25 20 19 27 27 C 1.47479 * 87.83646 * 332.99110 * 12 11 9 28 28 H 0.97006 * 120.00177 * 0.02562 * 1 2 3 29 29 H 0.96699 * 114.00233 * 307.15338 * 10 9 7 30 30 H 1.08995 * 113.47732 * 25.10100 * 11 9 7 31 31 H 1.08994 * 113.47943 * 254.63112 * 11 9 7 32 32 H 1.09002 * 109.46874 * 50.00069 * 13 12 11 33 33 H 1.08992 * 109.47435 * 290.00076 * 13 12 11 34 34 H 0.96699 * 113.99795 * 300.00288 * 16 14 13 35 35 H 1.09003 * 109.46799 * 65.00713 * 17 14 13 36 36 H 1.08994 * 109.47210 * 305.00689 * 17 14 13 37 37 H 1.09009 * 109.47053 * 59.99822 * 19 18 17 38 38 H 1.08999 * 109.46886 * 299.99771 * 19 18 17 39 39 H 1.08009 * 119.98065 * 0.02562 * 21 20 19 40 40 H 1.08005 * 119.97533 * 179.72855 * 22 21 20 41 41 H 1.07996 * 119.99186 * 180.25176 * 23 22 21 42 42 H 1.07994 * 120.02076 * 179.77045 * 24 23 22 43 43 H 1.08999 * 113.48164 * 141.77299 * 27 12 11 44 44 H 1.09005 * 113.47736 * 272.24687 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3977 2.6808 0.5916 6 1 3.4897 1.4729 0.8033 7 6 2.0045 -1.1941 -0.0005 8 1 3.0776 -1.1981 0.1208 9 6 1.2605 -2.4936 -0.1703 10 8 0.4080 -2.5100 -1.3171 11 6 2.1380 -3.7444 -0.0215 12 7 1.0261 -4.3712 0.7174 13 6 1.5229 -5.1252 1.8761 14 6 0.3427 -5.5487 2.7530 15 1 -0.3335 -6.1771 2.1734 16 8 -0.3561 -4.3871 3.2047 17 6 0.8602 -6.3346 3.9595 18 8 -0.2467 -6.8296 4.7158 19 6 0.1288 -7.5818 5.8713 20 6 -1.1101 -8.0513 6.5894 21 6 -2.3599 -7.7300 6.0944 22 6 -3.4963 -8.1557 6.7559 23 6 -3.3845 -8.9123 7.9078 24 6 -2.1362 -9.2348 8.4048 25 6 -0.9968 -8.8039 7.7459 26 9 0.2243 -9.1184 8.2309 27 6 0.5985 -3.0161 1.1125 28 1 -0.4851 0.8401 -0.0004 29 1 -0.2060 -1.7642 -1.3614 30 1 3.0268 -3.5812 0.5879 31 1 2.3602 -4.2343 -0.9694 32 1 2.1991 -4.4968 2.4557 33 1 2.0560 -6.0113 1.5316 34 1 0.1856 -3.7811 3.7286 35 1 1.4653 -5.6803 4.5870 36 1 1.4678 -7.1712 3.6148 37 1 0.7187 -6.9529 6.5383 38 1 0.7214 -8.4443 5.5665 39 1 -2.4485 -7.1425 5.1924 40 1 -4.4725 -7.9004 6.3708 41 1 -4.2731 -9.2479 8.4217 42 1 -2.0489 -9.8226 9.3065 43 1 -0.4839 -2.8887 1.1254 44 1 1.0767 -2.6585 2.0245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429669664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:27 Heat of formation + Delta-G solvation = -123.691961 kcal Electronic energy + Delta-G solvation = -27064.770829 eV Core-core repulsion = 22898.115015 eV Total energy + Delta-G solvation = -4166.655814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.21534 -39.65394 -39.36390 -38.08721 -36.37257 -34.08664 -32.44384 -32.12476 -30.81332 -30.78048 -27.92911 -26.41158 -25.32554 -24.80490 -23.08663 -22.46154 -21.91378 -21.07596 -18.66154 -17.97199 -17.38315 -16.99412 -16.67702 -16.52218 -16.05505 -15.95736 -15.54895 -15.25600 -15.13122 -14.77152 -14.47918 -14.28606 -13.97341 -13.75289 -13.50960 -13.39623 -12.91281 -12.64980 -12.36747 -12.25596 -12.05013 -11.90416 -11.63250 -11.48791 -11.30786 -11.12865 -10.89506 -10.70416 -10.59990 -10.39727 -10.03114 -10.00180 -9.61006 -9.21714 -9.12469 -8.93112 -8.67661 -8.19534 -7.82437 -6.23587 -4.32120 0.81082 0.92811 3.20966 3.21476 3.28347 3.28759 3.30374 3.94779 4.27101 4.33402 4.48700 4.61140 4.69068 4.74655 4.94285 4.96231 5.02140 5.04300 5.12328 5.14519 5.21418 5.28592 5.33669 5.51522 5.56782 5.74876 5.80862 5.83113 5.92461 5.98905 6.06598 6.14532 6.25854 6.34476 6.45601 6.58135 6.68650 6.94766 7.14484 7.25781 7.37201 7.76362 7.91258 7.98030 8.07523 8.68765 9.37169 9.51782 10.82803 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.002138 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.620623 B =13094.850116 C =13268.158889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.073 3.927 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.241 3.759 10 O -0.567 6.567 11 C 0.004 3.996 12 N -0.467 5.467 13 C -0.011 4.011 14 C 0.119 3.881 15 H 0.109 0.891 16 O -0.541 6.541 17 C 0.033 3.967 18 O -0.370 6.370 19 C 0.104 3.896 20 C -0.121 4.121 21 C -0.065 4.065 22 C -0.130 4.130 23 C -0.094 4.094 24 C -0.156 4.156 25 C 0.098 3.902 26 F -0.140 7.140 27 C 0.004 3.996 28 H 0.269 0.731 29 H 0.384 0.616 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.368 0.632 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.147 0.853 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.075 0.925 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 -16.338 15.776 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.200 3.800 10 O -0.376 6.376 11 C -0.125 4.125 12 N -0.190 5.190 13 C -0.140 4.140 14 C 0.059 3.941 15 H 0.127 0.873 16 O -0.345 6.345 17 C -0.045 4.045 18 O -0.289 6.289 19 C 0.027 3.973 20 C -0.122 4.122 21 C -0.083 4.083 22 C -0.148 4.148 23 C -0.112 4.112 24 C -0.175 4.175 25 C 0.079 3.921 26 F -0.119 7.119 27 C -0.125 4.125 28 H 0.079 0.921 29 H 0.235 0.765 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.215 0.785 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.165 0.835 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.094 0.906 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.663 -17.518 14.984 23.342 hybrid contribution 1.850 1.875 1.306 2.940 sum -1.813 -15.643 16.290 22.658 Atomic orbital electron populations 1.69699 1.05953 1.27680 1.49475 1.25047 0.94961 0.99478 0.93531 0.86508 0.79735 0.82650 0.78492 1.20270 1.21089 1.19909 1.21481 0.94227 0.90857 1.51183 0.91815 1.19459 0.86970 0.90597 0.82983 1.86058 1.54094 1.52241 1.45172 1.24061 0.93942 0.96367 0.98128 1.68947 1.21554 1.14004 1.14486 1.23209 0.95956 1.00120 0.94751 1.21823 0.94477 0.86677 0.91084 0.87274 1.86707 1.40793 1.33559 1.73430 1.23359 0.89098 0.98024 0.93998 1.87907 1.31638 1.71082 1.38293 1.21048 0.93339 0.95276 0.87612 1.19748 0.96497 1.00592 0.95341 1.21072 0.90286 0.97116 0.99809 1.21324 0.99203 0.98510 0.95771 1.21059 0.96765 0.97337 0.96073 1.21075 0.91515 1.03306 1.01589 1.17444 0.80359 0.99971 0.94336 1.91489 1.41623 1.91237 1.87514 1.24442 1.01713 0.86332 1.00037 0.92108 0.76532 0.91918 0.91195 0.94296 0.90736 0.78485 0.92940 0.92346 0.91751 0.91778 0.83514 0.85056 0.85035 0.84715 0.90620 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.85 11.64 55.43 0.65 -23.20 16 2 C 0.07 1.92 5.33 -17.82 -0.09 1.82 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.28 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.28 8.66 -34.44 -0.30 -14.58 16 8 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 9 C 0.24 6.08 1.40 -91.24 -0.13 5.95 16 10 O -0.57 -15.27 13.51 -35.23 -0.48 -15.74 16 11 C 0.00 0.08 7.12 -7.54 -0.05 0.03 16 12 N -0.47 -9.60 6.41 -244.61 -1.57 -11.17 16 13 C -0.01 -0.17 4.67 -3.82 -0.02 -0.19 16 14 C 0.12 1.74 3.52 -26.73 -0.09 1.64 16 15 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 16 O -0.54 -8.95 11.22 -40.06 -0.45 -9.40 16 17 C 0.03 0.38 5.57 37.16 0.21 0.58 16 18 O -0.37 -4.62 8.79 -40.06 -0.35 -4.98 16 19 C 0.10 1.10 5.91 36.00 0.21 1.31 16 20 C -0.12 -1.30 5.89 -104.56 -0.62 -1.92 16 21 C -0.06 -0.68 9.38 -39.60 -0.37 -1.05 16 22 C -0.13 -1.10 10.04 -39.58 -0.40 -1.50 16 23 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 24 C -0.16 -1.30 10.03 -39.51 -0.40 -1.70 16 25 C 0.10 1.00 7.25 -39.42 -0.29 0.71 16 26 F -0.14 -1.49 16.80 2.25 0.04 -1.45 16 27 C 0.00 0.08 5.21 -7.54 -0.04 0.05 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.38 10.39 7.11 45.56 0.32 10.71 16 30 H 0.06 1.26 7.73 -51.93 -0.40 0.86 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.04 0.59 7.56 -51.93 -0.39 0.20 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.37 5.17 8.56 45.56 0.39 5.56 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.15 1.65 7.01 -52.48 -0.37 1.29 16 40 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.08 1.91 8.03 -51.93 -0.42 1.49 16 44 H 0.05 1.19 7.12 -51.93 -0.37 0.82 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -29.75 369.67 -9.39 -39.14 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -5.01 Total: 15.88 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.77 Total: -9.94 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: -0.92 Total: -34.37 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.28 Total: -30.12 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.75 -9.39 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429669664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.551 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds