Wall clock time and date at job start Fri Apr 10 2020 18:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47466 * 264.98997 * 3 2 1 5 5 H 1.48496 * 109.47405 * 24.99582 * 3 2 1 6 6 H 1.48507 * 109.46893 * 144.98861 * 3 2 1 7 7 C 1.37878 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99711 * 187.45568 * 7 2 1 9 9 C 1.50700 * 120.00209 * 7.44712 * 7 2 1 10 10 O 1.42903 * 113.25067 * 52.40682 * 9 7 2 11 11 C 1.53512 * 114.17046 * 185.35271 * 9 7 2 12 12 N 1.47487 * 87.93038 * 139.86488 * 11 9 7 13 13 C 1.46899 * 110.99929 * 221.29701 * 12 11 9 14 14 C 1.53001 * 109.46685 * 169.99668 * 13 12 11 15 15 H 1.09002 * 109.47137 * 60.00562 * 14 13 12 16 16 O 1.42895 * 109.47701 * 300.00055 * 14 13 12 17 17 C 1.53009 * 109.46694 * 179.97438 * 14 13 12 18 18 O 1.42901 * 109.46961 * 185.00416 * 17 14 13 19 19 C 1.42900 * 113.99977 * 180.02562 * 18 17 14 20 20 C 1.50694 * 109.47096 * 179.97438 * 19 18 17 21 21 C 1.38221 * 120.01744 * 359.97438 * 20 19 18 22 22 C 1.38214 * 120.02881 * 180.27511 * 21 20 19 23 23 C 1.38263 * 120.05309 * 359.49343 * 22 21 20 24 24 C 1.38178 * 120.02620 * 0.51208 * 23 22 21 25 25 C 1.38439 * 120.01331 * 180.02562 * 20 19 18 26 26 F 1.35103 * 120.02494 * 359.96107 * 25 20 19 27 27 C 1.47479 * 87.83646 * 332.99110 * 12 11 9 28 28 H 0.97006 * 120.00177 * 0.02562 * 1 2 3 29 29 H 0.96699 * 114.00233 * 307.15338 * 10 9 7 30 30 H 1.08995 * 113.47732 * 25.10100 * 11 9 7 31 31 H 1.08994 * 113.47943 * 254.63112 * 11 9 7 32 32 H 1.09002 * 109.46874 * 50.00069 * 13 12 11 33 33 H 1.08992 * 109.47435 * 290.00076 * 13 12 11 34 34 H 0.96699 * 113.99795 * 300.00288 * 16 14 13 35 35 H 1.09003 * 109.46799 * 65.00713 * 17 14 13 36 36 H 1.08994 * 109.47210 * 305.00689 * 17 14 13 37 37 H 1.09009 * 109.47053 * 59.99822 * 19 18 17 38 38 H 1.08999 * 109.46886 * 299.99771 * 19 18 17 39 39 H 1.08009 * 119.98065 * 0.02562 * 21 20 19 40 40 H 1.08005 * 119.97533 * 179.72855 * 22 21 20 41 41 H 1.07996 * 119.99186 * 180.25176 * 23 22 21 42 42 H 1.07994 * 120.02076 * 179.77045 * 24 23 22 43 43 H 1.08999 * 113.48164 * 141.77299 * 27 12 11 44 44 H 1.09005 * 113.47736 * 272.24687 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3977 2.6808 0.5916 6 1 3.4897 1.4729 0.8033 7 6 2.0045 -1.1941 -0.0005 8 1 3.0776 -1.1981 0.1208 9 6 1.2605 -2.4936 -0.1703 10 8 0.4080 -2.5100 -1.3171 11 6 2.1380 -3.7444 -0.0215 12 7 1.0261 -4.3712 0.7174 13 6 1.5229 -5.1252 1.8761 14 6 0.3427 -5.5487 2.7530 15 1 -0.3335 -6.1771 2.1734 16 8 -0.3561 -4.3871 3.2047 17 6 0.8602 -6.3346 3.9595 18 8 -0.2467 -6.8296 4.7158 19 6 0.1288 -7.5818 5.8713 20 6 -1.1101 -8.0513 6.5894 21 6 -2.3599 -7.7300 6.0944 22 6 -3.4963 -8.1557 6.7559 23 6 -3.3845 -8.9123 7.9078 24 6 -2.1362 -9.2348 8.4048 25 6 -0.9968 -8.8039 7.7459 26 9 0.2243 -9.1184 8.2309 27 6 0.5985 -3.0161 1.1125 28 1 -0.4851 0.8401 -0.0004 29 1 -0.2060 -1.7642 -1.3614 30 1 3.0268 -3.5812 0.5879 31 1 2.3602 -4.2343 -0.9694 32 1 2.1991 -4.4968 2.4557 33 1 2.0560 -6.0113 1.5316 34 1 0.1856 -3.7811 3.7286 35 1 1.4653 -5.6803 4.5870 36 1 1.4678 -7.1712 3.6148 37 1 0.7187 -6.9529 6.5383 38 1 0.7214 -8.4443 5.5665 39 1 -2.4485 -7.1425 5.1924 40 1 -4.4725 -7.9004 6.3708 41 1 -4.2731 -9.2479 8.4217 42 1 -2.0489 -9.8226 9.3065 43 1 -0.4839 -2.8887 1.1254 44 1 1.0767 -2.6585 2.0245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429669664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:26 Heat of formation + Delta-G solvation = -147.198555 kcal Electronic energy + Delta-G solvation = -27065.790151 eV Core-core repulsion = 22898.115015 eV Total energy + Delta-G solvation = -4167.675137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.97096 -41.14336 -40.24549 -39.12387 -37.59766 -35.94631 -34.16138 -33.24207 -32.06643 -31.48492 -29.40315 -27.58656 -26.65858 -26.58460 -24.20847 -23.49078 -22.72264 -22.28864 -20.51884 -19.21566 -18.69551 -17.99862 -17.68125 -17.45581 -17.17855 -16.89722 -16.87292 -16.60342 -16.38220 -16.14173 -15.77931 -15.46845 -15.31645 -15.05858 -14.66277 -14.14795 -14.10930 -13.93539 -13.80511 -13.50396 -13.37823 -13.28423 -12.91734 -12.82366 -12.65259 -12.45495 -12.39783 -12.25948 -11.99297 -11.90727 -11.75770 -11.02473 -10.94637 -10.81779 -10.65475 -10.01460 -9.91404 -9.63370 -9.59979 -8.21788 -6.37911 0.12153 0.24288 1.42636 1.45545 1.53722 2.29936 2.39484 2.60710 2.98941 3.22247 3.28330 3.49412 3.61579 3.80961 3.94022 4.01658 4.01850 4.05763 4.09583 4.22584 4.28967 4.31565 4.39533 4.40882 4.45602 4.47736 4.53015 4.59671 4.72001 4.91108 4.93476 5.06443 5.08757 5.16512 5.32428 5.35414 5.41234 5.47651 5.49422 5.74966 5.91576 6.03205 6.09608 6.37526 6.66710 6.79617 7.34297 7.42008 8.83603 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.002138 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.620623 B =13094.850116 C =13268.158889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.559 4.559 8 H 0.064 0.936 9 C 0.209 3.791 10 O -0.580 6.580 11 C 0.015 3.985 12 N -0.477 5.477 13 C -0.009 4.009 14 C 0.123 3.877 15 H 0.092 0.908 16 O -0.565 6.565 17 C 0.040 3.960 18 O -0.389 6.389 19 C 0.103 3.897 20 C -0.138 4.138 21 C -0.085 4.085 22 C -0.131 4.131 23 C -0.089 4.089 24 C -0.154 4.154 25 C 0.081 3.919 26 F -0.146 7.146 27 C 0.024 3.976 28 H 0.270 0.730 29 H 0.377 0.623 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.377 0.623 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.149 0.851 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.043 0.957 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 -17.256 17.437 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.788 3.212 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.597 4.597 8 H 0.082 0.918 9 C 0.168 3.832 10 O -0.388 6.388 11 C -0.114 4.114 12 N -0.200 5.200 13 C -0.139 4.139 14 C 0.063 3.937 15 H 0.110 0.890 16 O -0.371 6.371 17 C -0.037 4.037 18 O -0.308 6.308 19 C 0.027 3.973 20 C -0.139 4.139 21 C -0.103 4.103 22 C -0.149 4.149 23 C -0.106 4.106 24 C -0.173 4.173 25 C 0.062 3.938 26 F -0.125 7.125 27 C -0.105 4.105 28 H 0.080 0.920 29 H 0.227 0.773 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.225 0.775 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.182 0.818 42 H 0.175 0.825 43 H 0.062 0.938 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.950 -18.456 16.653 25.033 hybrid contribution 1.571 2.097 0.808 2.742 sum -1.379 -16.359 17.461 23.967 Atomic orbital electron populations 1.69796 1.07132 1.28422 1.49819 1.25786 0.95732 1.02557 0.93130 0.85509 0.78659 0.78688 0.78370 1.20224 1.20794 1.19117 1.21745 0.94402 0.91906 1.51624 0.91751 1.19889 0.88008 0.91954 0.83325 1.86042 1.54322 1.51961 1.46477 1.23961 0.94194 0.94519 0.98703 1.68817 1.21653 1.12914 1.16589 1.23282 0.96669 1.00502 0.93401 1.21756 0.93546 0.86218 0.92175 0.89013 1.86675 1.42001 1.34583 1.73818 1.23225 0.88878 0.98633 0.92964 1.87883 1.32372 1.71526 1.39059 1.21126 0.93648 0.95444 0.87050 1.19857 0.96653 1.01392 0.95989 1.21052 0.91173 0.98114 0.99958 1.21600 0.99332 0.98049 0.95937 1.21437 0.97653 0.96124 0.95422 1.21423 0.91158 1.02731 1.01984 1.17640 0.80779 1.00743 0.94659 1.91468 1.42089 1.91365 1.87568 1.24078 0.99371 0.87907 0.99161 0.92016 0.77278 0.90137 0.91184 0.93032 0.88250 0.77468 0.91462 0.90219 0.91269 0.90868 0.85169 0.83277 0.81784 0.82500 0.93834 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.63 11.64 21.45 0.25 -49.38 16 2 C 0.03 1.51 5.33 84.66 0.45 1.96 16 3 Si 0.96 41.46 29.54 68.60 2.03 43.49 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.56 -29.60 8.66 25.60 0.22 -29.38 16 8 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 9 C 0.21 10.61 1.40 -11.20 -0.02 10.60 16 10 O -0.58 -32.00 13.51 -148.98 -2.01 -34.01 16 11 C 0.01 0.63 7.12 83.58 0.60 1.23 16 12 N -0.48 -19.33 6.41 -928.19 -5.95 -25.28 16 13 C -0.01 -0.28 4.67 86.30 0.40 0.12 16 14 C 0.12 3.48 3.52 30.60 0.11 3.59 16 15 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 16 O -0.56 -18.82 11.22 -144.37 -1.62 -20.44 16 17 C 0.04 0.86 5.57 71.99 0.40 1.26 16 18 O -0.39 -9.54 8.79 -144.37 -1.27 -10.81 16 19 C 0.10 2.13 5.91 71.23 0.42 2.55 16 20 C -0.14 -2.94 5.89 -19.82 -0.12 -3.05 16 21 C -0.08 -1.77 9.38 22.26 0.21 -1.57 16 22 C -0.13 -2.05 10.04 22.27 0.22 -1.82 16 23 C -0.09 -1.10 10.04 22.26 0.22 -0.88 16 24 C -0.15 -2.25 10.03 22.31 0.22 -2.02 16 25 C 0.08 1.57 7.25 22.38 0.16 1.73 16 26 F -0.15 -2.98 16.80 44.97 0.76 -2.22 16 27 C 0.02 1.12 5.21 83.58 0.44 1.56 16 28 H 0.27 13.97 8.31 -92.70 -0.77 13.19 16 29 H 0.38 21.20 7.11 -74.06 -0.53 20.68 16 30 H 0.08 3.08 7.73 -2.39 -0.02 3.06 16 31 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.05 1.44 7.56 -2.39 -0.02 1.42 16 33 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.38 10.56 8.56 -74.06 -0.63 9.92 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.13 3.08 7.01 -2.91 -0.02 3.06 16 40 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 42 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.04 2.27 8.03 -2.39 -0.02 2.25 16 44 H 0.06 2.56 7.12 -2.38 -0.02 2.54 16 Total: -1.00 -64.51 369.67 -4.01 -68.52 By element: Atomic # 1 Polarization: 44.40 SS G_CDS: -0.13 Total: 44.27 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 3.95 Total: -14.12 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -5.70 Total: -74.67 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -4.90 Total: -65.26 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.76 Total: -2.22 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -64.51 -4.01 -68.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429669664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.682 kcal (2) G-P(sol) polarization free energy of solvation -64.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds