Wall clock time and date at job start Fri Apr 10 2020 18:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40588 * 127.38704 * 2 1 4 4 N 1.28909 * 106.83425 * 179.97438 * 3 2 1 5 5 N 1.28427 * 110.33879 * 359.72577 * 4 3 2 6 6 C 1.31541 * 110.50159 * 0.46011 * 5 4 3 7 7 S 1.76193 * 126.45113 * 179.81860 * 6 5 4 8 8 C 1.80999 * 100.00117 * 359.68743 * 7 6 5 9 9 C 1.53002 * 109.47106 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47282 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99744 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00237 * 179.97438 * 10 9 8 13 13 C 1.46925 * 120.63140 * 179.97438 * 12 10 9 14 14 C 1.53199 * 108.89139 * 126.46223 * 13 12 10 15 15 C 1.53041 * 109.30985 * 54.56663 * 14 13 12 16 16 C 1.50697 * 109.45603 * 178.62848 * 15 14 13 17 17 H 1.07995 * 120.00385 * 5.44576 * 16 15 14 18 18 C 1.37878 * 120.00004 * 185.45076 * 16 15 14 19 19 N 1.31523 * 119.99779 * 9.57446 * 18 16 15 20 20 Si 1.86792 * 120.00378 * 189.57699 * 18 16 15 21 21 H 1.48502 * 109.47293 * 94.98675 * 20 18 16 22 22 H 1.48498 * 109.47645 * 214.99039 * 20 18 16 23 23 H 1.48504 * 109.47147 * 334.98961 * 20 18 16 24 24 C 1.53038 * 109.53781 * 298.63456 * 15 14 13 25 25 C 1.46958 * 120.65360 * 359.81830 * 12 10 9 26 26 H 1.09006 * 109.47198 * 270.04235 * 1 2 3 27 27 H 1.09004 * 109.47267 * 30.03990 * 1 2 3 28 28 H 1.09001 * 109.47623 * 150.04201 * 1 2 3 29 29 H 1.08993 * 109.46957 * 60.00192 * 8 7 6 30 30 H 1.09003 * 109.46943 * 299.99927 * 8 7 6 31 31 H 1.09006 * 109.47175 * 59.99836 * 9 8 7 32 32 H 1.08999 * 109.46790 * 300.00169 * 9 8 7 33 33 H 1.09002 * 109.58577 * 6.60978 * 13 12 10 34 34 H 1.08994 * 109.59073 * 246.31994 * 13 12 10 35 35 H 1.08998 * 109.49718 * 174.51595 * 14 13 12 36 36 H 1.09002 * 109.49858 * 294.58094 * 14 13 12 37 37 H 1.08998 * 109.46358 * 58.65355 * 15 14 13 38 38 H 0.97003 * 119.99616 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.49805 * 181.31963 * 24 15 14 40 40 H 1.09012 * 109.49437 * 301.41389 * 24 15 14 41 41 H 1.09005 * 109.47029 * 113.74938 * 25 12 10 42 42 H 1.08996 * 109.71124 * 353.46556 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3186 1.1170 0.0000 4 7 3.5256 0.6645 0.0006 5 7 3.5208 -0.6198 0.0067 6 6 2.2870 -1.0759 0.0006 7 16 1.7966 -2.7682 0.0009 8 6 3.4211 -3.5663 0.0017 9 6 3.2428 -5.0859 0.0015 10 6 4.5954 -5.7504 0.0015 11 8 5.6028 -5.0750 0.0022 12 7 4.6856 -7.0951 0.0018 13 6 5.9971 -7.7574 0.0013 14 6 6.0521 -8.7496 1.1673 15 6 4.8636 -9.7090 1.0719 16 6 4.9331 -10.7077 2.1983 17 1 5.6920 -10.6102 2.9605 18 6 4.0278 -11.7461 2.2558 19 7 3.2276 -11.9780 1.2381 20 14 3.9377 -12.8235 3.7790 21 1 2.8746 -12.3153 4.6827 22 1 3.6232 -14.2191 3.3805 23 1 5.2439 -12.7928 4.4850 24 6 3.5576 -8.9176 1.1724 25 6 3.4743 -7.9273 0.0061 26 1 -0.3634 0.0008 1.0277 27 1 -0.3634 0.8896 -0.5145 28 1 -0.3634 -0.8903 -0.5132 29 1 3.9734 -3.2651 0.8918 30 1 3.9741 -3.2655 -0.8882 31 1 2.6906 -5.3868 -0.8889 32 1 2.6896 -5.3869 0.8911 33 1 6.7831 -7.0115 0.1189 34 1 6.1369 -8.2905 -0.9390 35 1 6.9819 -9.3164 1.1191 36 1 6.0063 -8.2054 2.1106 37 1 4.8970 -10.2349 0.1178 38 1 2.5910 -12.7088 1.2784 39 1 2.7120 -9.6038 1.1280 40 1 3.5347 -8.3718 2.1158 41 1 3.4062 -8.4746 -0.9341 42 1 2.5944 -7.2952 0.1255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541046649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:32 Heat of formation + Delta-G solvation = 71.335831 kcal Electronic energy + Delta-G solvation = -24532.481465 eV Core-core repulsion = 20869.248275 eV Total energy + Delta-G solvation = -3663.233191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.17814 -39.87253 -37.00452 -35.56466 -33.63316 -33.25353 -32.50562 -31.21106 -30.20576 -28.72771 -26.60105 -25.11535 -23.77285 -23.38991 -22.78830 -22.19663 -19.93399 -18.52661 -18.30869 -17.31802 -17.14812 -17.02484 -16.28610 -15.90111 -15.65187 -14.84193 -14.57750 -14.30973 -14.26882 -14.12906 -13.42837 -13.27554 -13.05122 -12.92112 -12.72616 -12.64490 -12.43498 -12.37929 -11.78984 -11.63158 -11.50678 -11.45100 -11.28031 -11.02149 -10.97709 -10.82774 -10.70555 -10.47296 -10.27007 -9.79060 -9.56560 -9.16141 -9.06412 -8.44857 -8.41723 -8.14140 -6.12146 -4.13512 0.28396 0.51198 1.43804 1.71856 1.89803 2.80161 3.24082 3.32327 3.34344 3.35967 3.77083 4.32495 4.36897 4.44406 4.45362 4.67756 4.70385 4.74412 4.96784 5.01257 5.16859 5.20770 5.40211 5.48909 5.57620 5.68184 5.72867 5.84561 5.96297 6.08686 6.12315 6.35854 6.54096 6.79613 6.93988 6.99734 7.09594 7.56793 7.77263 7.81520 7.89149 8.07364 8.33240 8.38322 8.90239 9.50682 10.96517 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.002270 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.648654 B =12332.957800 C =12952.711942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.368 5.368 3 N -0.085 5.085 4 N -0.030 5.030 5 N -0.327 5.327 6 C 0.216 3.784 7 S 0.033 5.967 8 C -0.089 4.089 9 C -0.130 4.130 10 C 0.518 3.482 11 O -0.551 6.551 12 N -0.597 5.597 13 C 0.111 3.889 14 C -0.123 4.123 15 C 0.046 3.954 16 C -0.515 4.515 17 H 0.055 0.945 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.886 3.114 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.119 4.119 25 C 0.101 3.899 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.035 0.965 38 H 0.260 0.740 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 17.403 -4.783 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.167 5.167 3 N -0.072 5.072 4 N -0.026 5.026 5 N -0.184 5.184 6 C -0.169 4.169 7 S 0.259 5.741 8 C -0.239 4.239 9 C -0.171 4.171 10 C 0.303 3.697 11 O -0.430 6.430 12 N -0.329 5.329 13 C -0.011 4.011 14 C -0.161 4.161 15 C 0.028 3.972 16 C -0.553 4.553 17 H 0.073 0.927 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.714 3.286 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.157 4.157 25 C -0.021 4.021 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.625 18.218 -4.845 21.166 hybrid contribution 0.003 -0.678 0.880 1.111 sum -9.621 17.540 -3.965 20.395 Atomic orbital electron populations 1.22282 0.71749 1.06185 1.05329 1.51509 1.09739 1.03221 1.52239 1.82481 0.95079 1.07273 1.22411 1.77901 1.12648 1.02817 1.09265 1.75041 1.16463 1.03227 1.23654 1.27752 0.89939 0.98191 1.01055 1.85646 1.12727 0.84825 1.90881 1.23498 0.94033 0.96649 1.09680 1.21429 0.97732 0.92134 1.05848 1.20084 0.90344 0.82355 0.76878 1.90702 1.37777 1.63271 1.51276 1.48199 1.08745 1.04803 1.71188 1.21737 0.83875 0.95774 0.99678 1.22010 1.01167 0.96837 0.96121 1.18652 0.88673 0.91685 0.98213 1.21167 1.14835 1.09773 1.09538 0.92662 1.24951 0.95994 0.96935 0.95875 1.69950 1.22966 1.30734 1.29104 0.86666 0.78436 0.79776 0.83676 1.20720 1.21307 1.19901 1.21964 1.03433 0.96180 0.94157 1.22065 0.84991 0.93567 1.01460 0.88637 0.87576 0.87921 0.87005 0.87087 0.87774 0.87538 0.90195 0.92013 0.91919 0.92979 0.94680 0.92988 0.89537 0.93862 0.91550 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.34 11.40 59.84 0.68 1.02 16 2 N -0.37 -3.49 4.09 -68.10 -0.28 -3.76 16 3 N -0.09 -1.06 13.93 60.35 0.84 -0.22 16 4 N -0.03 -0.44 13.38 60.35 0.81 0.36 16 5 N -0.33 -4.60 11.57 30.50 0.35 -4.25 16 6 C 0.22 2.35 8.15 -89.17 -0.73 1.62 16 7 S 0.03 0.27 21.79 -107.50 -2.34 -2.08 16 8 C -0.09 -0.93 4.52 37.16 0.17 -0.76 16 9 C -0.13 -1.34 4.05 -27.88 -0.11 -1.46 16 10 C 0.52 7.80 7.70 -10.99 -0.08 7.71 16 11 O -0.55 -10.06 15.40 5.55 0.09 -9.98 16 12 N -0.60 -9.54 2.98 -172.72 -0.51 -10.05 16 13 C 0.11 1.90 6.43 -3.71 -0.02 1.88 16 14 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 15 C 0.05 1.04 1.93 -91.73 -0.18 0.86 16 16 C -0.52 -13.23 8.48 -34.44 -0.29 -13.52 16 17 H 0.06 1.43 7.77 -52.49 -0.41 1.03 16 18 C 0.06 1.67 5.19 -17.82 -0.09 1.58 16 19 N -0.89 -23.75 12.16 55.43 0.67 -23.07 16 20 Si 0.89 20.28 29.55 -169.99 -5.02 15.26 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.12 -2.36 5.21 -26.59 -0.14 -2.50 16 25 C 0.10 1.56 6.33 -3.67 -0.02 1.54 16 26 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.10 0.22 7.85 -51.93 -0.41 -0.19 16 29 H 0.11 1.33 8.10 -51.92 -0.42 0.91 16 30 H 0.11 1.28 8.10 -51.91 -0.42 0.86 16 31 H 0.10 0.86 7.95 -51.93 -0.41 0.45 16 32 H 0.11 0.98 7.69 -51.93 -0.40 0.58 16 33 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 39 H 0.09 1.92 6.87 -51.93 -0.36 1.56 16 40 H 0.04 0.87 8.14 -51.92 -0.42 0.44 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.82 5.95 -51.93 -0.31 0.51 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -31.86 361.53 -6.92 -38.79 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.01 Total: -1.87 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.96 Total: -4.57 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 1.88 Total: -40.99 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.34 Total: -2.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.86 -6.92 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541046649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.121 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds