Wall clock time and date at job start Fri Apr 10 2020 18:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40588 * 127.38704 * 2 1 4 4 N 1.28909 * 106.83425 * 179.97438 * 3 2 1 5 5 N 1.28427 * 110.33879 * 359.72577 * 4 3 2 6 6 C 1.31541 * 110.50159 * 0.46011 * 5 4 3 7 7 S 1.76193 * 126.45113 * 179.81860 * 6 5 4 8 8 C 1.80999 * 100.00117 * 359.68743 * 7 6 5 9 9 C 1.53002 * 109.47106 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47282 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99744 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00237 * 179.97438 * 10 9 8 13 13 C 1.46925 * 120.63140 * 179.97438 * 12 10 9 14 14 C 1.53199 * 108.89139 * 126.46223 * 13 12 10 15 15 C 1.53041 * 109.30985 * 54.56663 * 14 13 12 16 16 C 1.50697 * 109.45603 * 178.62848 * 15 14 13 17 17 H 1.07995 * 120.00385 * 5.44576 * 16 15 14 18 18 C 1.37878 * 120.00004 * 185.45076 * 16 15 14 19 19 N 1.31523 * 119.99779 * 9.57446 * 18 16 15 20 20 Si 1.86792 * 120.00378 * 189.57699 * 18 16 15 21 21 H 1.48502 * 109.47293 * 94.98675 * 20 18 16 22 22 H 1.48498 * 109.47645 * 214.99039 * 20 18 16 23 23 H 1.48504 * 109.47147 * 334.98961 * 20 18 16 24 24 C 1.53038 * 109.53781 * 298.63456 * 15 14 13 25 25 C 1.46958 * 120.65360 * 359.81830 * 12 10 9 26 26 H 1.09006 * 109.47198 * 270.04235 * 1 2 3 27 27 H 1.09004 * 109.47267 * 30.03990 * 1 2 3 28 28 H 1.09001 * 109.47623 * 150.04201 * 1 2 3 29 29 H 1.08993 * 109.46957 * 60.00192 * 8 7 6 30 30 H 1.09003 * 109.46943 * 299.99927 * 8 7 6 31 31 H 1.09006 * 109.47175 * 59.99836 * 9 8 7 32 32 H 1.08999 * 109.46790 * 300.00169 * 9 8 7 33 33 H 1.09002 * 109.58577 * 6.60978 * 13 12 10 34 34 H 1.08994 * 109.59073 * 246.31994 * 13 12 10 35 35 H 1.08998 * 109.49718 * 174.51595 * 14 13 12 36 36 H 1.09002 * 109.49858 * 294.58094 * 14 13 12 37 37 H 1.08998 * 109.46358 * 58.65355 * 15 14 13 38 38 H 0.97003 * 119.99616 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.49805 * 181.31963 * 24 15 14 40 40 H 1.09012 * 109.49437 * 301.41389 * 24 15 14 41 41 H 1.09005 * 109.47029 * 113.74938 * 25 12 10 42 42 H 1.08996 * 109.71124 * 353.46556 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3186 1.1170 0.0000 4 7 3.5256 0.6645 0.0006 5 7 3.5208 -0.6198 0.0067 6 6 2.2870 -1.0759 0.0006 7 16 1.7966 -2.7682 0.0009 8 6 3.4211 -3.5663 0.0017 9 6 3.2428 -5.0859 0.0015 10 6 4.5954 -5.7504 0.0015 11 8 5.6028 -5.0750 0.0022 12 7 4.6856 -7.0951 0.0018 13 6 5.9971 -7.7574 0.0013 14 6 6.0521 -8.7496 1.1673 15 6 4.8636 -9.7090 1.0719 16 6 4.9331 -10.7077 2.1983 17 1 5.6920 -10.6102 2.9605 18 6 4.0278 -11.7461 2.2558 19 7 3.2276 -11.9780 1.2381 20 14 3.9377 -12.8235 3.7790 21 1 2.8746 -12.3153 4.6827 22 1 3.6232 -14.2191 3.3805 23 1 5.2439 -12.7928 4.4850 24 6 3.5576 -8.9176 1.1724 25 6 3.4743 -7.9273 0.0061 26 1 -0.3634 0.0008 1.0277 27 1 -0.3634 0.8896 -0.5145 28 1 -0.3634 -0.8903 -0.5132 29 1 3.9734 -3.2651 0.8918 30 1 3.9741 -3.2655 -0.8882 31 1 2.6906 -5.3868 -0.8889 32 1 2.6896 -5.3869 0.8911 33 1 6.7831 -7.0115 0.1189 34 1 6.1369 -8.2905 -0.9390 35 1 6.9819 -9.3164 1.1191 36 1 6.0063 -8.2054 2.1106 37 1 4.8970 -10.2349 0.1178 38 1 2.5910 -12.7088 1.2784 39 1 2.7120 -9.6038 1.1280 40 1 3.5347 -8.3718 2.1158 41 1 3.4062 -8.4746 -0.9341 42 1 2.5944 -7.2952 0.1255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541046649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:31 Heat of formation + Delta-G solvation = 51.180869 kcal Electronic energy + Delta-G solvation = -24533.355450 eV Core-core repulsion = 20869.248275 eV Total energy + Delta-G solvation = -3664.107175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.02768 -41.13515 -38.45701 -36.26332 -35.29211 -34.29645 -33.41753 -32.84021 -31.65227 -29.26927 -28.18095 -26.26924 -24.75440 -24.35481 -24.13271 -23.55837 -21.38448 -19.76361 -19.10639 -18.63969 -18.06563 -17.93670 -17.77855 -16.90696 -16.89105 -16.43677 -15.73488 -15.31759 -15.07502 -14.84693 -14.70338 -14.62881 -14.51374 -14.14574 -13.85202 -13.70340 -13.60534 -13.20837 -13.17241 -13.00238 -12.75412 -12.66267 -12.47027 -12.33824 -12.16063 -12.09029 -11.92969 -11.82445 -11.54440 -11.46037 -11.03809 -10.87553 -10.66575 -10.37610 -9.52618 -9.10743 -8.10505 -6.17471 -0.44490 -0.29592 0.65384 0.97656 1.11443 1.41541 1.45119 1.53147 1.64171 2.14742 2.45874 3.10886 3.19464 3.49988 3.65390 3.71486 3.85716 4.07459 4.16280 4.24614 4.30734 4.38472 4.46670 4.47027 4.51135 4.58009 4.61777 4.63318 4.77143 4.86928 4.91742 4.97647 5.01315 5.21688 5.28934 5.40907 5.55481 5.69229 6.00793 6.08641 6.41187 6.53685 6.92350 7.18401 7.18886 7.48858 8.96838 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.002270 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.648654 B =12332.957800 C =12952.711942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.356 5.356 3 N -0.097 5.097 4 N -0.063 5.063 5 N -0.363 5.363 6 C 0.200 3.800 7 S 0.112 5.888 8 C -0.099 4.099 9 C -0.121 4.121 10 C 0.515 3.485 11 O -0.587 6.587 12 N -0.602 5.602 13 C 0.117 3.883 14 C -0.114 4.114 15 C 0.043 3.957 16 C -0.536 4.536 17 H 0.044 0.956 18 C 0.023 3.977 19 N -0.910 5.910 20 Si 0.941 3.059 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.276 1.276 24 C -0.111 4.111 25 C 0.112 3.888 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.007 0.993 38 H 0.262 0.738 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.539 17.875 -4.896 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.156 5.156 3 N -0.086 5.086 4 N -0.059 5.059 5 N -0.220 5.220 6 C -0.184 4.184 7 S 0.338 5.662 8 C -0.249 4.249 9 C -0.162 4.162 10 C 0.303 3.697 11 O -0.468 6.468 12 N -0.334 5.334 13 C -0.006 4.006 14 C -0.152 4.152 15 C 0.024 3.976 16 C -0.574 4.574 17 H 0.062 0.938 18 C -0.177 4.177 19 N -0.550 5.550 20 Si 0.768 3.232 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.150 4.150 25 C -0.010 4.010 26 H 0.134 0.866 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.330 18.699 -4.957 22.940 hybrid contribution 0.777 -0.851 0.924 1.477 sum -11.554 17.848 -4.033 21.640 Atomic orbital electron populations 1.22862 0.68541 1.08244 1.07296 1.51814 1.11211 1.01969 1.50601 1.82346 0.95090 1.08669 1.22450 1.77864 1.13773 1.03364 1.10883 1.74922 1.18650 1.03361 1.25101 1.28223 0.89544 0.99844 1.00772 1.85278 1.09043 0.81804 1.90089 1.23387 0.96077 0.97224 1.08215 1.21454 0.95017 0.91393 1.08380 1.20869 0.91858 0.81633 0.75322 1.90693 1.39693 1.63831 1.52610 1.48246 1.08221 1.05436 1.71504 1.21547 0.85059 0.95190 0.98771 1.21851 0.99814 0.96687 0.96847 1.18626 0.91401 0.91956 0.95597 1.21511 1.14642 1.10959 1.10254 0.93783 1.25559 0.95874 0.98127 0.98108 1.70033 1.23403 1.31242 1.30280 0.85808 0.78295 0.78289 0.80831 1.20025 1.21101 1.20049 1.21740 1.00708 0.96467 0.96078 1.21991 0.86305 0.93331 0.99370 0.86605 0.85910 0.85565 0.88916 0.88453 0.84518 0.85320 0.90378 0.91293 0.92324 0.93866 0.97441 0.92921 0.91876 0.94309 0.91264 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.40 127.77 1.46 1.77 16 2 N -0.36 -6.06 4.09 -369.37 -1.51 -7.57 16 3 N -0.10 -2.39 13.93 37.02 0.52 -1.87 16 4 N -0.06 -1.86 13.38 37.02 0.50 -1.37 16 5 N -0.36 -10.19 11.57 -57.41 -0.66 -10.85 16 6 C 0.20 4.03 8.15 179.84 1.47 5.50 16 7 S 0.11 1.43 21.79 -56.49 -1.23 0.19 16 8 C -0.10 -1.87 4.52 71.98 0.33 -1.54 16 9 C -0.12 -2.08 4.05 29.85 0.12 -1.96 16 10 C 0.52 14.52 7.70 87.66 0.67 15.19 16 11 O -0.59 -21.13 15.40 -3.05 -0.05 -21.18 16 12 N -0.60 -18.17 2.98 -818.75 -2.44 -20.61 16 13 C 0.12 3.95 6.43 86.37 0.56 4.50 16 14 C -0.11 -4.47 5.30 30.67 0.16 -4.30 16 15 C 0.04 1.95 1.93 -11.51 -0.02 1.92 16 16 C -0.54 -27.95 8.48 25.60 0.22 -27.73 16 17 H 0.04 2.33 7.77 -2.91 -0.02 2.31 16 18 C 0.02 1.19 5.19 84.65 0.44 1.63 16 19 N -0.91 -48.87 12.16 21.45 0.26 -48.60 16 20 Si 0.94 41.63 29.55 68.60 2.03 43.66 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 C -0.11 -4.34 5.21 30.68 0.16 -4.18 16 25 C 0.11 3.16 6.33 86.37 0.55 3.71 16 26 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 27 H 0.12 0.19 8.14 -2.38 -0.02 0.17 16 28 H 0.13 -0.01 7.85 -2.39 -0.02 -0.03 16 29 H 0.09 2.14 8.10 -2.40 -0.02 2.12 16 30 H 0.10 2.13 8.10 -2.39 -0.02 2.12 16 31 H 0.14 1.53 7.95 -2.38 -0.02 1.52 16 32 H 0.13 1.73 7.69 -2.39 -0.02 1.71 16 33 H 0.08 2.68 7.00 -2.39 -0.02 2.66 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.01 0.38 8.09 -2.39 -0.02 0.36 16 38 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 39 H 0.06 2.77 6.87 -2.39 -0.02 2.76 16 40 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 41 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.11 2.20 5.95 -2.39 -0.01 2.18 16 Total: -1.00 -72.27 361.53 4.54 -67.73 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.03 Total: 5.97 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 6.10 Total: -5.50 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -3.34 Total: -90.88 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -1.23 Total: 0.19 kcal Total: -72.27 4.54 -67.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541046649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.911 kcal (2) G-P(sol) polarization free energy of solvation -72.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds