Wall clock time and date at job start Fri Apr 10 2020 18:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34144 * 118.70725 * 2 1 4 4 O 1.21223 * 119.36027 * 359.45274 * 3 2 1 5 5 C 1.50584 * 121.27705 * 179.45143 * 3 2 1 6 6 C 1.53246 * 109.16193 * 29.09552 * 5 3 2 7 7 C 1.53239 * 108.56744 * 304.38050 * 6 5 3 8 8 H 1.08994 * 109.52212 * 175.58398 * 7 6 5 9 9 N 1.46494 * 109.52455 * 295.71208 * 7 6 5 10 10 C 1.34777 * 120.00265 * 204.99800 * 9 7 6 11 11 O 1.21590 * 119.99491 * 359.97438 * 10 9 7 12 12 N 1.34772 * 120.00199 * 179.97438 * 10 9 7 13 13 C 1.47020 * 125.65037 * 359.69972 * 12 10 9 14 14 C 1.54339 * 107.27056 * 178.84766 * 13 12 10 15 15 C 1.55158 * 103.01551 * 338.13640 * 14 13 12 16 16 O 1.42898 * 111.00670 * 277.23352 * 15 14 13 17 17 C 1.50701 * 111.03666 * 153.39317 * 15 14 13 18 18 H 1.08000 * 119.99827 * 6.33312 * 17 15 14 19 19 C 1.37877 * 119.99969 * 186.32436 * 17 15 14 20 20 N 1.31515 * 120.00224 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 119.99735 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47235 * 60.00833 * 21 19 17 23 23 H 1.48507 * 109.47296 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47316 * 300.00607 * 21 19 17 25 25 C 1.47431 * 125.64635 * 179.97438 * 12 10 9 26 26 C 1.34140 * 118.70328 * 179.97438 * 2 1 3 27 27 O 1.21230 * 119.36058 * 0.52062 * 26 2 1 28 28 H 1.08995 * 109.47229 * 270.00746 * 1 2 3 29 29 H 1.09001 * 109.47098 * 30.00328 * 1 2 3 30 30 H 1.08996 * 109.47290 * 149.99756 * 1 2 3 31 31 H 1.08998 * 109.52680 * 269.18739 * 5 3 2 32 32 H 1.09007 * 109.52029 * 148.99974 * 5 3 2 33 33 H 1.09002 * 109.61974 * 64.11007 * 6 5 3 34 34 H 1.08997 * 109.61736 * 184.65630 * 6 5 3 35 35 H 0.97003 * 120.00022 * 24.99871 * 9 7 6 36 36 H 1.09006 * 109.87735 * 298.38739 * 13 12 10 37 37 H 1.08994 * 109.88591 * 59.54919 * 13 12 10 38 38 H 1.08992 * 110.84907 * 219.67242 * 14 13 12 39 39 H 1.08998 * 110.51305 * 96.44397 * 14 13 12 40 40 H 0.96697 * 114.00172 * 173.64959 * 16 15 14 41 41 H 0.96998 * 119.99987 * 179.97438 * 20 19 17 42 42 H 1.08992 * 110.37109 * 322.93478 * 25 12 10 43 43 H 1.09002 * 110.36084 * 85.26199 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1094 1.1766 0.0000 4 8 1.4682 2.2053 -0.0101 5 6 3.6136 1.2441 0.0123 6 6 4.1787 -0.0002 -0.6811 7 6 3.6136 -1.2443 0.0124 8 1 3.9433 -2.1380 -0.5174 9 7 4.0902 -1.2921 1.3968 10 6 4.1673 -2.4725 2.0427 11 8 3.8408 -3.4977 1.4763 12 7 4.6062 -2.5165 3.3161 13 6 5.0369 -1.3595 4.1145 14 6 5.4244 -1.8862 5.5126 15 6 4.6617 -3.2345 5.6018 16 8 3.3050 -3.0301 6.0014 17 6 5.3589 -4.1896 6.5359 18 1 6.2083 -3.8564 7.1138 19 6 4.9124 -5.4889 6.6528 20 7 3.8784 -5.8948 5.9488 21 14 5.7763 -6.6726 7.8112 22 1 5.7108 -6.1447 9.1976 23 1 5.1083 -7.9977 7.7536 24 1 7.1968 -6.8166 7.4030 25 6 4.7394 -3.7336 4.1375 26 6 2.1093 -1.1766 0.0005 27 8 1.4680 -2.2054 -0.0086 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 3.9683 1.2797 1.0424 32 1 3.9425 2.1378 -0.5182 33 1 3.8837 -0.0001 -1.7305 34 1 5.2660 -0.0001 -0.6039 35 1 4.3503 -0.4741 1.8487 36 1 5.8975 -0.8841 3.6438 37 1 4.2186 -0.6450 4.2032 38 1 5.0895 -1.2015 6.2916 39 1 6.5006 -2.0471 5.5754 40 1 2.7631 -3.8306 5.9775 41 1 3.5645 -6.8089 6.0308 42 1 3.9224 -4.4239 3.9281 43 1 5.7001 -4.2137 3.9511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592033577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:35 Heat of formation + Delta-G solvation = -131.890987 kcal Electronic energy + Delta-G solvation = -29021.820723 eV Core-core repulsion = 24874.729334 eV Total energy + Delta-G solvation = -4147.091389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95410 -39.78889 -38.91083 -37.55550 -36.15945 -35.13377 -34.29081 -32.64030 -32.24248 -30.17661 -28.35843 -27.84445 -27.59812 -25.05099 -23.56467 -23.24393 -22.59815 -20.04672 -19.69672 -18.56851 -17.85834 -17.60374 -17.27806 -17.06032 -16.73034 -15.98641 -15.43268 -15.09439 -14.95669 -14.72755 -14.63157 -14.36024 -14.04657 -13.54247 -13.32011 -13.18543 -13.04078 -13.00206 -12.83449 -12.62100 -12.15504 -11.92008 -11.74399 -11.62283 -11.47110 -11.03523 -10.88579 -10.67325 -10.64320 -10.50689 -10.47045 -10.22224 -9.88125 -9.74275 -9.39627 -9.14152 -8.70703 -8.39847 -7.79478 -6.28138 -4.38693 1.28972 2.28300 2.44549 3.05507 3.21977 3.28135 3.29383 3.48241 3.74256 4.09600 4.22241 4.23304 4.29393 4.33122 4.64643 4.98343 5.08395 5.17765 5.19690 5.21258 5.29045 5.33402 5.36686 5.42830 5.55972 5.58770 5.69786 5.92921 6.02711 6.33404 6.45855 6.63474 6.75696 6.82983 6.85565 7.16227 7.21870 7.27256 7.47792 7.60041 7.73144 8.00952 8.37049 8.64820 8.96597 9.28420 9.36794 10.78771 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.003220 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.152345 B = 8693.997986 C = 8910.998549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.567 5.567 3 C 0.523 3.477 4 O -0.506 6.506 5 C -0.144 4.144 6 C -0.134 4.134 7 C 0.153 3.847 8 H 0.134 0.866 9 N -0.740 5.740 10 C 0.713 3.287 11 O -0.575 6.575 12 N -0.624 5.624 13 C 0.103 3.897 14 C -0.115 4.115 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.540 4.540 18 H 0.066 0.934 19 C 0.072 3.928 20 N -0.891 5.891 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.114 3.886 26 C 0.502 3.498 27 O -0.465 6.465 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.396 0.604 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.382 0.618 41 H 0.271 0.729 42 H 0.086 0.914 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 14.372 -12.445 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.312 5.312 3 C 0.313 3.687 4 O -0.380 6.380 5 C -0.184 4.184 6 C -0.172 4.172 7 C 0.043 3.957 8 H 0.152 0.848 9 N -0.401 5.401 10 C 0.415 3.585 11 O -0.451 6.451 12 N -0.361 5.361 13 C -0.021 4.021 14 C -0.153 4.153 15 C 0.208 3.792 16 O -0.392 6.392 17 C -0.579 4.579 18 H 0.084 0.916 19 C -0.132 4.132 20 N -0.529 5.529 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.008 4.008 26 C 0.288 3.712 27 O -0.332 6.332 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.232 0.768 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.232 0.768 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.821 13.971 -12.900 19.033 hybrid contribution 0.237 -0.844 0.823 1.202 sum 1.058 13.127 -12.076 17.868 Atomic orbital electron populations 1.21932 0.77740 1.04541 1.03862 1.46604 1.10118 1.07794 1.66659 1.20928 0.91337 0.82487 0.73977 1.90735 1.68754 1.33092 1.45370 1.21961 0.90032 1.01546 1.04864 1.22136 1.03371 0.91210 1.00492 1.20961 0.87495 1.02221 0.84989 0.84805 1.45068 1.72575 1.09301 1.13111 1.15534 0.78806 0.83280 0.80855 1.90967 1.55431 1.32404 1.66321 1.47957 1.66701 1.11195 1.10257 1.21972 0.97681 0.88957 0.93444 1.22589 1.00419 0.98687 0.93642 1.19632 0.80915 0.89823 0.88851 1.86098 1.23242 1.39373 1.90467 1.21400 1.15735 0.95352 1.25380 0.91560 1.25080 0.94675 0.98224 0.95182 1.69709 1.24498 1.18740 1.39945 0.86462 0.79670 0.79682 0.81077 1.20019 1.21080 1.20013 1.23196 1.01866 0.84830 0.90901 1.21723 0.91989 0.82522 0.75014 1.90798 1.68124 1.32846 1.41475 0.91131 0.89387 0.89286 0.87301 0.86248 0.88619 0.87644 0.76802 0.92906 0.92787 0.90725 0.90313 0.76847 0.91871 0.89536 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 9.99 59.85 0.60 1.27 16 2 N -0.57 -6.68 2.93 -123.17 -0.36 -7.04 16 3 C 0.52 5.39 7.48 -11.32 -0.08 5.31 16 4 O -0.51 -6.58 16.44 5.61 0.09 -6.48 16 5 C -0.14 -0.88 5.88 -27.81 -0.16 -1.04 16 6 C -0.13 -0.77 5.73 -26.48 -0.15 -0.92 16 7 C 0.15 1.71 2.75 -69.01 -0.19 1.52 16 8 H 0.13 1.66 7.58 -51.93 -0.39 1.27 16 9 N -0.74 -9.72 4.95 -59.75 -0.30 -10.02 16 10 C 0.71 13.69 8.45 -86.92 -0.73 12.96 16 11 O -0.57 -13.54 16.26 5.29 0.09 -13.46 16 12 N -0.62 -12.31 3.33 -176.24 -0.59 -12.90 16 13 C 0.10 1.65 6.15 -3.06 -0.02 1.64 16 14 C -0.12 -2.16 6.13 -24.89 -0.15 -2.32 16 15 C 0.25 5.86 0.87 -89.63 -0.08 5.78 16 16 O -0.58 -14.70 13.16 -35.23 -0.46 -15.17 16 17 C -0.54 -13.78 8.27 -34.44 -0.28 -14.06 16 18 H 0.07 1.65 7.79 -52.49 -0.41 1.24 16 19 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 20 N -0.89 -23.71 10.69 55.43 0.59 -23.12 16 21 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.11 2.68 5.38 -2.53 -0.01 2.67 16 26 C 0.50 6.90 7.02 -11.32 -0.08 6.82 16 27 O -0.47 -8.49 16.44 5.60 0.09 -8.40 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.86 7.28 -51.93 -0.38 0.48 16 30 H 0.09 0.98 7.28 -51.93 -0.38 0.61 16 31 H 0.11 0.55 6.81 -51.93 -0.35 0.20 16 32 H 0.12 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.40 4.03 6.13 -40.82 -0.25 3.78 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 40 H 0.38 9.99 7.56 45.56 0.34 10.34 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.09 2.35 7.33 -51.93 -0.38 1.97 16 43 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -34.49 353.57 -7.11 -41.60 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -5.13 Total: 13.16 kcal Atomic # 6 Polarization: 22.83 SS G_CDS: -1.45 Total: 21.38 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.65 Total: -53.08 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.19 Total: -43.51 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.49 -7.11 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.286 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds