Wall clock time and date at job start Fri Apr 10 2020 18:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34144 * 118.70725 * 2 1 4 4 O 1.21223 * 119.36027 * 359.45274 * 3 2 1 5 5 C 1.50584 * 121.27705 * 179.45143 * 3 2 1 6 6 C 1.53246 * 109.16193 * 29.09552 * 5 3 2 7 7 C 1.53239 * 108.56744 * 304.38050 * 6 5 3 8 8 H 1.08994 * 109.52212 * 175.58398 * 7 6 5 9 9 N 1.46494 * 109.52455 * 295.71208 * 7 6 5 10 10 C 1.34777 * 120.00265 * 204.99800 * 9 7 6 11 11 O 1.21590 * 119.99491 * 359.97438 * 10 9 7 12 12 N 1.34772 * 120.00199 * 179.97438 * 10 9 7 13 13 C 1.47020 * 125.65037 * 359.69972 * 12 10 9 14 14 C 1.54339 * 107.27056 * 178.84766 * 13 12 10 15 15 C 1.55158 * 103.01551 * 338.13640 * 14 13 12 16 16 O 1.42898 * 111.00670 * 277.23352 * 15 14 13 17 17 C 1.50701 * 111.03666 * 153.39317 * 15 14 13 18 18 H 1.08000 * 119.99827 * 6.33312 * 17 15 14 19 19 C 1.37877 * 119.99969 * 186.32436 * 17 15 14 20 20 N 1.31515 * 120.00224 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 119.99735 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47235 * 60.00833 * 21 19 17 23 23 H 1.48507 * 109.47296 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47316 * 300.00607 * 21 19 17 25 25 C 1.47431 * 125.64635 * 179.97438 * 12 10 9 26 26 C 1.34140 * 118.70328 * 179.97438 * 2 1 3 27 27 O 1.21230 * 119.36058 * 0.52062 * 26 2 1 28 28 H 1.08995 * 109.47229 * 270.00746 * 1 2 3 29 29 H 1.09001 * 109.47098 * 30.00328 * 1 2 3 30 30 H 1.08996 * 109.47290 * 149.99756 * 1 2 3 31 31 H 1.08998 * 109.52680 * 269.18739 * 5 3 2 32 32 H 1.09007 * 109.52029 * 148.99974 * 5 3 2 33 33 H 1.09002 * 109.61974 * 64.11007 * 6 5 3 34 34 H 1.08997 * 109.61736 * 184.65630 * 6 5 3 35 35 H 0.97003 * 120.00022 * 24.99871 * 9 7 6 36 36 H 1.09006 * 109.87735 * 298.38739 * 13 12 10 37 37 H 1.08994 * 109.88591 * 59.54919 * 13 12 10 38 38 H 1.08992 * 110.84907 * 219.67242 * 14 13 12 39 39 H 1.08998 * 110.51305 * 96.44397 * 14 13 12 40 40 H 0.96697 * 114.00172 * 173.64959 * 16 15 14 41 41 H 0.96998 * 119.99987 * 179.97438 * 20 19 17 42 42 H 1.08992 * 110.37109 * 322.93478 * 25 12 10 43 43 H 1.09002 * 110.36084 * 85.26199 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1094 1.1766 0.0000 4 8 1.4682 2.2053 -0.0101 5 6 3.6136 1.2441 0.0123 6 6 4.1787 -0.0002 -0.6811 7 6 3.6136 -1.2443 0.0124 8 1 3.9433 -2.1380 -0.5174 9 7 4.0902 -1.2921 1.3968 10 6 4.1673 -2.4725 2.0427 11 8 3.8408 -3.4977 1.4763 12 7 4.6062 -2.5165 3.3161 13 6 5.0369 -1.3595 4.1145 14 6 5.4244 -1.8862 5.5126 15 6 4.6617 -3.2345 5.6018 16 8 3.3050 -3.0301 6.0014 17 6 5.3589 -4.1896 6.5359 18 1 6.2083 -3.8564 7.1138 19 6 4.9124 -5.4889 6.6528 20 7 3.8784 -5.8948 5.9488 21 14 5.7763 -6.6726 7.8112 22 1 5.7108 -6.1447 9.1976 23 1 5.1083 -7.9977 7.7536 24 1 7.1968 -6.8166 7.4030 25 6 4.7394 -3.7336 4.1375 26 6 2.1093 -1.1766 0.0005 27 8 1.4680 -2.2054 -0.0086 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 3.9683 1.2797 1.0424 32 1 3.9425 2.1378 -0.5182 33 1 3.8837 -0.0001 -1.7305 34 1 5.2660 -0.0001 -0.6039 35 1 4.3503 -0.4741 1.8487 36 1 5.8975 -0.8841 3.6438 37 1 4.2186 -0.6450 4.2032 38 1 5.0895 -1.2015 6.2916 39 1 6.5006 -2.0471 5.5754 40 1 2.7631 -3.8306 5.9775 41 1 3.5645 -6.8089 6.0308 42 1 3.9224 -4.4239 3.9281 43 1 5.7001 -4.2137 3.9511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592033577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:34 Heat of formation + Delta-G solvation = -160.598475 kcal Electronic energy + Delta-G solvation = -29023.065574 eV Core-core repulsion = 24874.729334 eV Total energy + Delta-G solvation = -4148.336239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.90880 -41.20913 -40.01375 -39.12416 -37.24253 -36.16551 -36.05161 -34.22821 -33.69178 -31.69295 -29.66310 -29.03613 -28.65516 -26.83580 -24.57314 -24.29790 -23.75082 -21.49115 -21.35503 -19.65646 -19.15216 -18.86623 -18.61712 -18.23094 -17.71050 -17.24609 -16.90775 -16.74962 -16.29517 -16.02193 -15.84675 -15.57802 -15.05625 -14.84303 -14.70181 -14.60322 -14.33697 -14.11067 -13.81297 -13.68416 -13.52195 -13.49196 -13.28503 -12.80382 -12.54130 -12.46882 -12.33147 -12.29636 -12.24295 -12.07082 -11.78675 -11.36686 -11.29961 -11.17515 -10.89029 -10.65289 -10.40085 -10.29615 -9.38267 -8.23335 -6.41234 0.31454 1.31992 1.44207 1.44717 1.48303 1.53222 1.88725 2.10745 2.39118 2.84152 3.02528 3.03955 3.45113 3.52205 3.73214 3.80617 4.08341 4.18604 4.20827 4.24009 4.28597 4.34871 4.36027 4.46272 4.63775 4.66335 4.78510 4.79645 4.87200 5.03841 5.08948 5.12012 5.20533 5.28792 5.39661 5.47604 5.76861 5.83432 6.02533 6.12574 6.32600 6.63867 6.66500 6.98831 7.26678 7.35440 7.50177 8.81284 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.003220 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.152345 B = 8693.997986 C = 8910.998549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.570 5.570 3 C 0.520 3.480 4 O -0.532 6.532 5 C -0.137 4.137 6 C -0.117 4.117 7 C 0.151 3.849 8 H 0.119 0.881 9 N -0.714 5.714 10 C 0.709 3.291 11 O -0.628 6.628 12 N -0.631 5.631 13 C 0.104 3.896 14 C -0.110 4.110 15 C 0.229 3.771 16 O -0.589 6.589 17 C -0.556 4.556 18 H 0.071 0.929 19 C 0.026 3.974 20 N -0.917 5.917 21 Si 0.963 3.037 22 H -0.270 1.270 23 H -0.289 1.289 24 H -0.267 1.267 25 C 0.130 3.870 26 C 0.503 3.497 27 O -0.524 6.524 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.153 0.847 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.416 0.584 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.371 0.629 41 H 0.268 0.732 42 H 0.038 0.962 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 17.531 -12.821 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.313 5.313 3 C 0.313 3.687 4 O -0.407 6.407 5 C -0.176 4.176 6 C -0.154 4.154 7 C 0.041 3.959 8 H 0.137 0.863 9 N -0.375 5.375 10 C 0.410 3.590 11 O -0.508 6.508 12 N -0.367 5.367 13 C -0.018 4.018 14 C -0.148 4.148 15 C 0.189 3.811 16 O -0.397 6.397 17 C -0.594 4.594 18 H 0.090 0.910 19 C -0.175 4.175 20 N -0.556 5.556 21 Si 0.789 3.211 22 H -0.195 1.195 23 H -0.215 1.215 24 H -0.192 1.192 25 C 0.006 3.994 26 C 0.290 3.710 27 O -0.395 6.395 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.146 0.854 32 H 0.171 0.829 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.255 0.745 36 H 0.122 0.878 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.219 0.781 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.396 17.255 -13.277 22.035 hybrid contribution -0.621 -1.778 0.919 2.095 sum 2.775 15.477 -12.358 19.999 Atomic orbital electron populations 1.21956 0.78094 1.04830 1.03614 1.46740 1.10326 1.08070 1.66158 1.21872 0.93201 0.81158 0.72490 1.90732 1.69855 1.33671 1.46486 1.22143 0.86006 1.02881 1.06587 1.22200 1.05017 0.87587 1.00617 1.21210 0.85799 1.04923 0.83953 0.86321 1.44741 1.71152 1.07941 1.13684 1.15771 0.78311 0.84257 0.80626 1.90936 1.57433 1.34935 1.67515 1.47870 1.67188 1.11036 1.10613 1.22207 1.00207 0.87644 0.91711 1.22600 1.00500 0.95937 0.95769 1.19924 0.80329 0.92739 0.88153 1.86090 1.24169 1.38764 1.90645 1.21792 1.15942 0.96012 1.25689 0.91047 1.25844 0.95263 0.99906 0.96516 1.69855 1.25805 1.18701 1.41230 0.85524 0.78829 0.77451 0.79326 1.19461 1.21480 1.19195 1.22650 0.98944 0.85698 0.92092 1.22277 0.93080 0.82114 0.73481 1.90780 1.69477 1.34889 1.44321 0.91697 0.88084 0.89986 0.85400 0.82949 0.86593 0.84140 0.74471 0.87807 0.91121 0.89755 0.88886 0.78051 0.92307 0.94350 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 9.99 127.77 1.28 2.55 16 2 N -0.57 -12.86 2.93 -781.15 -2.29 -15.15 16 3 C 0.52 9.27 7.48 87.72 0.66 9.93 16 4 O -0.53 -12.58 16.44 -2.85 -0.05 -12.62 16 5 C -0.14 -0.95 5.88 29.89 0.18 -0.77 16 6 C -0.12 -0.78 5.73 30.76 0.18 -0.60 16 7 C 0.15 3.07 2.75 44.29 0.12 3.19 16 8 H 0.12 2.88 7.58 -2.39 -0.02 2.86 16 9 N -0.71 -16.98 4.95 -461.21 -2.28 -19.27 16 10 C 0.71 26.92 8.45 179.06 1.51 28.43 16 11 O -0.63 -30.73 16.26 -4.00 -0.07 -30.79 16 12 N -0.63 -24.36 3.33 -829.75 -2.76 -27.12 16 13 C 0.10 2.97 6.15 86.73 0.53 3.51 16 14 C -0.11 -3.86 6.13 31.79 0.19 -3.67 16 15 C 0.23 10.83 0.87 -10.15 -0.01 10.82 16 16 O -0.59 -30.30 13.16 -148.98 -1.96 -32.26 16 17 C -0.56 -28.47 8.27 25.60 0.21 -28.26 16 18 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16 19 C 0.03 1.34 5.29 84.65 0.45 1.79 16 20 N -0.92 -50.79 10.69 21.45 0.23 -50.56 16 21 Si 0.96 41.64 29.54 68.60 2.03 43.67 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 25 C 0.13 6.30 5.38 86.85 0.47 6.77 16 26 C 0.50 13.71 7.02 87.72 0.62 14.32 16 27 O -0.52 -20.07 16.44 -2.88 -0.05 -20.12 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 1.96 7.28 -2.39 -0.02 1.94 16 30 H 0.08 1.93 7.28 -2.39 -0.02 1.92 16 31 H 0.13 0.50 6.81 -2.39 -0.02 0.48 16 32 H 0.15 0.24 8.14 -2.38 -0.02 0.22 16 33 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.42 6.55 6.13 -92.71 -0.57 5.98 16 36 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.09 2.97 8.03 -2.39 -0.02 2.95 16 40 H 0.37 20.39 7.56 -74.06 -0.56 19.83 16 41 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 42 H 0.04 2.21 7.33 -2.39 -0.02 2.19 16 43 H 0.04 2.19 8.03 -2.39 -0.02 2.17 16 Total: -1.00 -82.08 353.57 -0.87 -82.95 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -0.06 Total: 33.28 kcal Atomic # 6 Polarization: 41.62 SS G_CDS: 6.38 Total: 48.00 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -7.10 Total: -112.10 kcal Atomic # 8 Polarization: -93.68 SS G_CDS: -2.12 Total: -95.80 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -82.08 -0.87 -82.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.650 kcal (2) G-P(sol) polarization free energy of solvation -82.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds