Wall clock time and date at job start Fri Apr 10 2020 18:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34274 * 118.67503 * 2 1 4 4 O 1.21234 * 119.45195 * 359.43420 * 3 2 1 5 5 C 1.50590 * 121.18783 * 179.45702 * 3 2 1 6 6 C 1.53239 * 109.21485 * 29.10660 * 5 3 2 7 7 C 1.53244 * 108.56429 * 304.35623 * 6 5 3 8 8 H 1.08999 * 109.51972 * 175.58340 * 7 6 5 9 9 N 1.46494 * 109.52312 * 295.70710 * 7 6 5 10 10 C 1.34782 * 120.00039 * 205.00587 * 9 7 6 11 11 O 1.21582 * 119.99964 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99787 * 180.02562 * 10 9 7 13 13 C 1.47024 * 125.65351 * 0.02562 * 12 10 9 14 14 C 1.54318 * 107.27312 * 181.02343 * 13 12 10 15 15 C 1.55150 * 102.94348 * 22.19113 * 14 13 12 16 16 O 1.42902 * 111.00272 * 82.57384 * 15 14 13 17 17 C 1.50698 * 111.00556 * 206.42205 * 15 14 13 18 18 H 1.08001 * 120.00096 * 117.97715 * 17 15 14 19 19 C 1.37875 * 120.00121 * 297.98103 * 17 15 14 20 20 N 1.31519 * 119.99787 * 186.95576 * 19 17 15 21 21 Si 1.86798 * 120.00101 * 6.95063 * 19 17 15 22 22 H 1.48501 * 109.46978 * 84.71722 * 21 19 17 23 23 H 1.48500 * 109.47185 * 204.71816 * 21 19 17 24 24 H 1.48502 * 109.47051 * 324.72099 * 21 19 17 25 25 C 1.47429 * 125.64796 * 179.70976 * 12 10 9 26 26 C 1.34141 * 118.70498 * 180.02562 * 2 1 3 27 27 O 1.21230 * 119.36279 * 0.56849 * 26 2 1 28 28 H 1.08997 * 109.46834 * 269.99780 * 1 2 3 29 29 H 1.09001 * 109.46825 * 29.99507 * 1 2 3 30 30 H 1.08997 * 109.47431 * 149.99871 * 1 2 3 31 31 H 1.09005 * 109.51857 * 269.16911 * 5 3 2 32 32 H 1.09000 * 109.52230 * 149.04324 * 5 3 2 33 33 H 1.09005 * 109.62059 * 64.07521 * 6 5 3 34 34 H 1.08997 * 109.62135 * 184.62925 * 6 5 3 35 35 H 0.96998 * 120.00085 * 25.00246 * 9 7 6 36 36 H 1.09003 * 109.88247 * 300.44568 * 13 12 10 37 37 H 1.09006 * 109.87994 * 61.44929 * 13 12 10 38 38 H 1.09002 * 110.71653 * 140.55803 * 14 13 12 39 39 H 1.09005 * 110.71858 * 263.65026 * 14 13 12 40 40 H 0.96701 * 113.99670 * 180.02562 * 16 15 14 41 41 H 0.97001 * 119.99850 * 179.97438 * 20 19 17 42 42 H 1.08994 * 110.37258 * 274.75131 * 25 12 10 43 43 H 1.08999 * 110.36129 * 37.07272 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1093 1.1781 0.0000 4 8 1.4692 2.2076 -0.0104 5 6 3.6137 1.2441 0.0122 6 6 4.1788 0.0000 -0.6814 7 6 3.6136 -1.2442 0.0121 8 1 3.9433 -2.1379 -0.5178 9 7 4.0903 -1.2922 1.3965 10 6 4.1675 -2.4727 2.0422 11 8 3.8411 -3.4979 1.4758 12 7 4.6056 -2.5167 3.3160 13 6 5.0287 -1.3588 4.1171 14 6 5.4705 -1.8925 5.4961 15 6 5.8061 -3.3785 5.2023 16 8 7.1254 -3.5099 4.6692 17 6 5.6386 -4.2247 6.4380 18 1 4.9100 -5.0218 6.4520 19 6 6.4154 -3.9812 7.5508 20 7 6.3681 -4.8012 8.5779 21 14 7.5349 -2.4866 7.5996 22 1 6.7602 -1.3023 8.0495 23 1 8.6523 -2.7358 8.5454 24 1 8.0822 -2.2336 6.2424 25 6 4.7336 -3.7331 4.1391 26 6 2.1093 -1.1766 -0.0005 27 8 1.4681 -2.2054 -0.0115 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 3.9683 1.2796 1.0423 32 1 3.9434 2.1378 -0.5176 33 1 3.8836 0.0000 -1.7307 34 1 5.2660 0.0000 -0.6042 35 1 4.3504 -0.4743 1.8485 36 1 5.8638 -0.8558 3.6294 37 1 4.1961 -0.6652 4.2348 38 1 6.3533 -1.3605 5.8507 39 1 4.6581 -1.8134 6.2185 40 1 7.3800 -4.4211 4.4694 41 1 6.9149 -4.6301 9.3607 42 1 3.7836 -3.9683 4.6189 43 1 5.0685 -4.5711 3.5278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592033578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:36 Heat of formation + Delta-G solvation = -150.629525 kcal Electronic energy + Delta-G solvation = -28917.494828 eV Core-core repulsion = 24769.590875 eV Total energy + Delta-G solvation = -4147.903953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.90641 -41.31301 -40.03703 -39.29182 -37.26843 -36.18227 -36.13675 -34.49184 -33.73628 -31.85468 -30.02331 -29.13605 -28.65867 -26.91355 -24.50908 -24.23899 -23.78489 -21.79797 -21.36308 -19.82606 -19.33518 -18.89677 -18.64240 -18.23972 -17.71659 -17.20632 -17.00020 -16.70703 -16.55014 -16.08432 -15.82109 -15.58795 -15.15518 -15.07766 -14.76402 -14.68254 -14.37386 -14.19730 -14.09909 -13.82483 -13.74950 -13.49728 -13.23382 -13.07808 -12.80318 -12.47622 -12.36204 -12.29879 -12.19038 -11.80651 -11.78888 -11.38723 -11.30297 -10.98396 -10.88577 -10.75219 -10.42865 -10.36633 -9.49403 -8.35410 -6.51430 0.30797 1.29758 1.40036 1.44512 1.49330 1.68034 1.83803 2.05831 2.40931 2.81063 2.96055 3.00638 3.44092 3.51613 3.54729 3.72442 3.80355 4.02802 4.18781 4.21256 4.23650 4.29669 4.34902 4.42883 4.46282 4.58167 4.67680 4.79017 4.80569 4.86035 4.95005 5.03671 5.07180 5.10914 5.20676 5.42962 5.51589 5.82177 5.98742 6.07372 6.31804 6.60156 6.63611 6.87767 7.13163 7.29586 7.43322 8.79044 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.003237 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.920459 B = 8646.951236 C = 8974.386103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.570 5.570 3 C 0.521 3.479 4 O -0.532 6.532 5 C -0.138 4.138 6 C -0.119 4.119 7 C 0.151 3.849 8 H 0.121 0.879 9 N -0.715 5.715 10 C 0.715 3.285 11 O -0.622 6.622 12 N -0.626 5.626 13 C 0.107 3.893 14 C -0.130 4.130 15 C 0.219 3.781 16 O -0.570 6.570 17 C -0.556 4.556 18 H 0.035 0.965 19 C 0.036 3.964 20 N -0.937 5.937 21 Si 0.942 3.058 22 H -0.263 1.263 23 H -0.310 1.310 24 H -0.214 1.214 25 C 0.120 3.880 26 C 0.506 3.494 27 O -0.521 6.521 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.416 0.584 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.375 0.625 41 H 0.268 0.732 42 H 0.052 0.948 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 18.120 -19.192 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.313 5.313 3 C 0.314 3.686 4 O -0.407 6.407 5 C -0.177 4.177 6 C -0.156 4.156 7 C 0.042 3.958 8 H 0.139 0.861 9 N -0.376 5.376 10 C 0.417 3.583 11 O -0.502 6.502 12 N -0.363 5.363 13 C -0.015 4.015 14 C -0.168 4.168 15 C 0.178 3.822 16 O -0.377 6.377 17 C -0.594 4.594 18 H 0.053 0.947 19 C -0.164 4.164 20 N -0.575 5.575 21 Si 0.767 3.233 22 H -0.189 1.189 23 H -0.238 1.238 24 H -0.137 1.137 25 C -0.004 4.004 26 C 0.293 3.707 27 O -0.392 6.392 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.256 0.744 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.223 0.777 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.675 17.982 -19.474 26.641 hybrid contribution -0.189 -0.756 1.086 1.337 sum -2.864 17.225 -18.388 25.358 Atomic orbital electron populations 1.21963 0.78003 1.04797 1.03732 1.46762 1.10338 1.08017 1.66188 1.21857 0.93068 0.81217 0.72488 1.90744 1.69906 1.33639 1.46396 1.22136 0.86174 1.02838 1.06596 1.22199 1.04947 0.87809 1.00689 1.21198 0.85940 1.04838 0.83827 0.86081 1.44754 1.70995 1.08104 1.13748 1.15624 0.78178 0.84292 0.80212 1.90946 1.57317 1.34623 1.67288 1.47591 1.67658 1.10342 1.10688 1.22169 1.00583 0.87786 0.90950 1.22925 1.01797 0.95225 0.96853 1.19936 0.80136 0.93254 0.88912 1.86372 1.32822 1.32958 1.85556 1.21373 1.22276 1.17601 0.98109 0.94660 1.25820 0.97228 0.99080 0.94296 1.70082 1.41527 1.38590 1.07287 0.86044 0.78159 0.79318 0.79811 1.18872 1.23843 1.13671 1.22595 0.99319 0.86841 0.91662 1.22174 0.92887 0.82096 0.73525 1.90776 1.69398 1.34723 1.44321 0.91424 0.88366 0.89887 0.85337 0.83253 0.86646 0.84411 0.74430 0.88853 0.89197 0.90107 0.89847 0.77654 0.92266 0.92946 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 10.00 127.77 1.28 2.35 16 2 N -0.57 -10.88 2.93 -780.94 -2.29 -13.16 16 3 C 0.52 7.91 7.48 87.70 0.66 8.57 16 4 O -0.53 -11.38 16.45 -2.89 -0.05 -11.43 16 5 C -0.14 -0.68 5.88 29.89 0.18 -0.50 16 6 C -0.12 -0.55 5.73 30.76 0.18 -0.37 16 7 C 0.15 2.54 2.75 44.29 0.12 2.66 16 8 H 0.12 2.48 7.58 -2.39 -0.02 2.46 16 9 N -0.72 -14.04 4.95 -461.20 -2.28 -16.32 16 10 C 0.72 22.89 8.45 179.05 1.51 24.41 16 11 O -0.62 -25.95 16.26 -3.97 -0.06 -26.01 16 12 N -0.63 -20.43 3.32 -829.31 -2.76 -23.19 16 13 C 0.11 2.75 6.15 86.73 0.53 3.28 16 14 C -0.13 -4.52 4.63 31.78 0.15 -4.37 16 15 C 0.22 9.13 0.71 -10.07 -0.01 9.13 16 16 O -0.57 -22.75 10.83 -148.98 -1.61 -24.37 16 17 C -0.56 -29.35 8.83 25.60 0.23 -29.13 16 18 H 0.04 2.11 8.03 -2.91 -0.02 2.09 16 19 C 0.04 1.96 5.47 84.65 0.46 2.43 16 20 N -0.94 -55.73 13.96 21.45 0.30 -55.43 16 21 Si 0.94 40.99 23.98 68.60 1.65 42.64 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.31 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.21 -8.66 5.44 99.48 0.54 -8.12 16 25 C 0.12 4.82 6.09 86.93 0.53 5.34 16 26 C 0.51 11.67 7.03 87.72 0.62 12.29 16 27 O -0.52 -17.40 16.44 -2.87 -0.05 -17.45 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.64 7.28 -2.39 -0.02 1.62 16 30 H 0.08 1.66 7.28 -2.39 -0.02 1.64 16 31 H 0.13 0.22 6.81 -2.38 -0.02 0.21 16 32 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.12 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.42 5.11 6.13 -92.71 -0.57 4.54 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.08 2.73 4.82 -2.39 -0.01 2.72 16 39 H 0.08 2.98 8.04 -2.38 -0.02 2.96 16 40 H 0.38 13.77 9.06 -74.06 -0.67 13.10 16 41 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.05 2.27 8.03 -2.39 -0.02 2.25 16 43 H 0.06 2.43 8.03 -2.39 -0.02 2.41 16 Total: -1.00 -83.64 346.22 -1.06 -84.70 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.33 Total: 23.95 kcal Atomic # 6 Polarization: 29.65 SS G_CDS: 6.43 Total: 36.08 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -7.03 Total: -108.11 kcal Atomic # 8 Polarization: -77.49 SS G_CDS: -1.77 Total: -79.26 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.65 Total: 42.64 kcal Total: -83.64 -1.06 -84.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.929 kcal (2) G-P(sol) polarization free energy of solvation -83.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds