Wall clock time and date at job start Fri Apr 10 2020 18:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34145 * 118.70742 * 2 1 4 4 O 1.21218 * 119.36075 * 0.51993 * 3 2 1 5 5 C 1.50592 * 121.27771 * 180.54313 * 3 2 1 6 6 C 1.53235 * 109.16478 * 330.90646 * 5 3 2 7 7 C 1.53245 * 108.56895 * 55.60953 * 6 5 3 8 8 H 1.08999 * 109.52127 * 184.41494 * 7 6 5 9 9 N 1.46505 * 109.52027 * 64.29553 * 7 6 5 10 10 C 1.34771 * 120.00301 * 154.99842 * 9 7 6 11 11 O 1.21588 * 120.00024 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00073 * 180.02562 * 10 9 7 13 13 C 1.47423 * 125.64982 * 0.04069 * 12 10 9 14 14 C 1.55390 * 104.87471 * 204.10299 * 13 12 10 15 15 C 1.55158 * 101.36492 * 323.01395 * 14 13 12 16 16 O 1.42903 * 110.72242 * 277.04970 * 15 14 13 17 17 C 1.50697 * 110.72327 * 153.94986 * 15 14 13 18 18 H 1.07993 * 119.99713 * 2.44268 * 17 15 14 19 19 C 1.37880 * 120.00265 * 182.44086 * 17 15 14 20 20 N 1.31516 * 119.99566 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00188 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46994 * 90.00109 * 21 19 17 23 23 H 1.48500 * 109.47197 * 210.00361 * 21 19 17 24 24 H 1.48500 * 109.46832 * 330.00237 * 21 19 17 25 25 C 1.47030 * 125.64611 * 180.02562 * 12 10 9 26 26 C 1.34141 * 118.70595 * 179.97438 * 2 1 3 27 27 O 1.21225 * 119.35926 * 359.45872 * 26 2 1 28 28 H 1.09006 * 109.47169 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47493 * 119.99999 * 1 2 3 30 30 H 1.08997 * 109.47636 * 240.00305 * 1 2 3 31 31 H 1.08999 * 109.51927 * 210.99618 * 5 3 2 32 32 H 1.09001 * 109.52112 * 90.81180 * 5 3 2 33 33 H 1.09008 * 109.62056 * 295.89091 * 6 5 3 34 34 H 1.08995 * 109.62777 * 175.34045 * 6 5 3 35 35 H 0.96999 * 119.99431 * 335.00155 * 9 7 6 36 36 H 1.09000 * 110.36210 * 322.93098 * 13 12 10 37 37 H 1.08995 * 110.37029 * 85.25629 * 13 12 10 38 38 H 1.09003 * 111.18829 * 204.97963 * 14 13 12 39 39 H 1.08995 * 111.02788 * 80.97563 * 14 13 12 40 40 H 0.96700 * 114.00311 * 177.55860 * 16 15 14 41 41 H 0.96998 * 119.99594 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.88423 * 59.55979 * 25 12 10 43 43 H 1.08998 * 109.87911 * 298.38463 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1093 1.1766 0.0000 4 8 1.4682 2.2053 0.0096 5 6 3.6136 1.2441 -0.0122 6 6 4.1787 0.0000 0.6813 7 6 3.6135 -1.2443 -0.0121 8 1 3.9432 -2.1379 0.5177 9 7 4.0902 -1.2922 -1.3966 10 6 4.1673 -2.4726 -2.0423 11 8 3.8418 -3.4979 -1.4757 12 7 4.6064 -2.5167 -3.3158 13 6 5.0332 -1.3560 -4.1182 14 6 4.8386 -1.7986 -5.5949 15 6 5.2513 -3.2926 -5.5232 16 8 6.6714 -3.4294 -5.6049 17 6 4.5776 -4.0848 -6.6138 18 1 3.9433 -3.5852 -7.3309 19 6 4.7712 -5.4475 -6.6962 20 7 5.5434 -6.0559 -5.8226 21 14 3.9356 -6.4296 -8.0477 22 1 4.8194 -6.4824 -9.2399 23 1 3.6712 -7.8092 -7.5659 24 1 2.6519 -5.7779 -8.4117 25 6 4.7393 -3.7306 -4.1348 26 6 2.1092 -1.1765 0.0005 27 8 1.4680 -2.2053 0.0110 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 -0.3634 -0.5138 0.8900 31 1 3.9424 2.1378 0.5182 32 1 3.9683 1.2797 -1.0423 33 1 3.8835 0.0000 1.7306 34 1 5.2659 -0.0001 0.6042 35 1 4.3503 -0.4742 -1.8485 36 1 4.4080 -0.4911 -3.8964 37 1 6.0813 -1.1267 -3.9261 38 1 5.4970 -1.2431 -6.2628 39 1 3.7974 -1.6952 -5.9003 40 1 6.9839 -4.3412 -5.5272 41 1 5.6793 -7.0146 -5.8803 42 1 3.7698 -4.2187 -4.2341 43 1 5.4545 -4.4120 -3.6741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592033579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:39 Heat of formation + Delta-G solvation = -131.586771 kcal Electronic energy + Delta-G solvation = -28932.448526 eV Core-core repulsion = 24785.370329 eV Total energy + Delta-G solvation = -4147.078197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.99092 -39.82307 -38.94553 -37.58074 -36.19539 -35.17280 -34.34804 -32.67608 -32.21938 -30.11482 -28.39288 -27.87700 -27.61586 -25.05178 -23.60144 -23.25973 -22.66172 -20.15128 -19.61612 -18.61192 -17.90321 -17.60965 -17.30331 -17.11387 -16.78380 -15.99060 -15.54260 -15.16082 -14.99625 -14.69560 -14.53953 -14.36142 -14.08431 -13.58623 -13.30048 -13.24300 -12.98018 -12.94315 -12.88851 -12.64409 -12.28710 -11.94793 -11.76205 -11.60945 -11.52183 -11.06806 -10.86827 -10.73599 -10.69248 -10.50041 -10.49836 -10.20768 -9.92630 -9.76341 -9.37464 -9.17321 -8.69548 -8.36180 -7.89796 -6.31021 -4.39547 1.25146 2.25108 2.40349 3.01867 3.20908 3.28559 3.31077 3.44949 3.71536 4.07560 4.20610 4.21378 4.28123 4.29883 4.62105 4.96643 5.05067 5.14524 5.17315 5.18597 5.25304 5.28793 5.33988 5.41456 5.54767 5.59040 5.71896 5.91495 5.99803 6.30451 6.43748 6.62595 6.72803 6.82152 6.87839 7.13977 7.17843 7.26145 7.45965 7.56446 7.71301 7.98717 8.34001 8.63518 8.93667 9.27795 9.37114 10.76908 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.003253 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.475035 B = 8606.125514 C = 8901.427556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.568 5.568 3 C 0.523 3.477 4 O -0.507 6.507 5 C -0.144 4.144 6 C -0.134 4.134 7 C 0.153 3.847 8 H 0.135 0.865 9 N -0.740 5.740 10 C 0.713 3.287 11 O -0.575 6.575 12 N -0.626 5.626 13 C 0.101 3.899 14 C -0.116 4.116 15 C 0.249 3.751 16 O -0.585 6.585 17 C -0.539 4.539 18 H 0.067 0.933 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.122 3.878 26 C 0.502 3.498 27 O -0.465 6.465 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.396 0.604 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.385 0.615 41 H 0.271 0.729 42 H 0.065 0.935 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 15.000 11.958 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.312 5.312 3 C 0.313 3.687 4 O -0.380 6.380 5 C -0.184 4.184 6 C -0.172 4.172 7 C 0.043 3.957 8 H 0.152 0.848 9 N -0.401 5.401 10 C 0.414 3.586 11 O -0.451 6.451 12 N -0.363 5.363 13 C -0.022 4.022 14 C -0.154 4.154 15 C 0.208 3.792 16 O -0.395 6.395 17 C -0.578 4.578 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.533 5.533 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.197 1.197 25 C 0.000 4.000 26 C 0.288 3.712 27 O -0.332 6.332 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.232 0.768 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.236 0.764 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.417 14.601 12.429 19.326 hybrid contribution -0.432 -0.847 -0.876 1.293 sum -2.848 13.754 11.553 18.187 Atomic orbital electron populations 1.21948 0.77764 1.04746 1.03725 1.46612 1.10104 1.07804 1.66697 1.20960 0.91397 0.82536 0.73771 1.90725 1.68663 1.33101 1.45558 1.21959 0.89933 1.01603 1.04891 1.22138 1.03462 0.91154 1.00490 1.20972 0.87454 1.02290 0.84970 0.84774 1.45074 1.72611 1.09294 1.13120 1.15525 0.78914 0.83297 0.80827 1.90968 1.55481 1.32361 1.66313 1.47966 1.66764 1.11250 1.10309 1.22352 0.98769 0.88024 0.93053 1.22809 1.01405 0.97954 0.93207 1.19488 0.79819 0.89960 0.89930 1.86082 1.22875 1.34298 1.96223 1.21503 1.30102 0.92620 1.13528 0.91524 1.25068 0.94474 0.97750 0.95908 1.69636 1.37518 1.10931 1.35204 0.86394 0.79833 0.79150 0.81505 1.20363 1.20949 1.19712 1.22949 1.01673 0.84087 0.91316 1.21716 0.91955 0.82448 0.75126 1.90799 1.68187 1.32850 1.41360 0.88471 0.90647 0.90649 0.86206 0.87277 0.88606 0.87562 0.76753 0.92850 0.91653 0.90414 0.90540 0.76422 0.91900 0.91684 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 9.81 59.84 0.59 1.21 16 2 N -0.57 -6.40 2.93 -123.18 -0.36 -6.76 16 3 C 0.52 5.15 7.48 -11.32 -0.08 5.07 16 4 O -0.51 -6.33 16.19 5.61 0.09 -6.24 16 5 C -0.14 -0.83 5.88 -27.81 -0.16 -1.00 16 6 C -0.13 -0.76 5.73 -26.48 -0.15 -0.91 16 7 C 0.15 1.68 2.75 -69.01 -0.19 1.49 16 8 H 0.13 1.66 7.57 -51.93 -0.39 1.26 16 9 N -0.74 -9.52 4.95 -59.74 -0.30 -9.81 16 10 C 0.71 13.51 8.45 -86.93 -0.73 12.78 16 11 O -0.57 -13.43 16.33 5.29 0.09 -13.35 16 12 N -0.63 -12.27 3.33 -175.93 -0.59 -12.86 16 13 C 0.10 1.62 6.58 -2.27 -0.01 1.61 16 14 C -0.12 -2.19 6.26 -24.32 -0.15 -2.34 16 15 C 0.25 5.83 0.85 -89.94 -0.08 5.75 16 16 O -0.59 -14.22 13.07 -35.23 -0.46 -14.69 16 17 C -0.54 -13.88 8.11 -34.44 -0.28 -14.16 16 18 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 19 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 20 N -0.89 -23.56 10.96 55.43 0.61 -22.95 16 21 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C 0.12 2.89 5.38 -3.06 -0.02 2.87 16 26 C 0.50 6.68 7.03 -11.33 -0.08 6.60 16 27 O -0.47 -8.28 16.93 5.61 0.09 -8.18 16 28 H 0.10 0.94 6.73 -51.93 -0.35 0.59 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.51 6.81 -51.93 -0.35 0.16 16 33 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.40 3.90 5.63 -40.82 -0.23 3.67 16 36 H 0.05 0.66 7.30 -51.93 -0.38 0.28 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 40 H 0.38 9.68 7.23 45.56 0.33 10.01 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 43 H 0.06 1.68 8.00 -51.93 -0.42 1.27 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -34.25 353.31 -7.09 -41.33 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.12 Total: 12.11 kcal Atomic # 6 Polarization: 22.17 SS G_CDS: -1.45 Total: 20.72 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.63 Total: -52.38 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.19 Total: -42.45 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.25 -7.09 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.253 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds