Wall clock time and date at job start Fri Apr 10 2020 18:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34145 * 118.70742 * 2 1 4 4 O 1.21218 * 119.36075 * 0.51993 * 3 2 1 5 5 C 1.50592 * 121.27771 * 180.54313 * 3 2 1 6 6 C 1.53235 * 109.16478 * 330.90646 * 5 3 2 7 7 C 1.53245 * 108.56895 * 55.60953 * 6 5 3 8 8 H 1.08999 * 109.52127 * 184.41494 * 7 6 5 9 9 N 1.46505 * 109.52027 * 64.29553 * 7 6 5 10 10 C 1.34771 * 120.00301 * 154.99842 * 9 7 6 11 11 O 1.21588 * 120.00024 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00073 * 180.02562 * 10 9 7 13 13 C 1.47423 * 125.64982 * 0.04069 * 12 10 9 14 14 C 1.55390 * 104.87471 * 204.10299 * 13 12 10 15 15 C 1.55158 * 101.36492 * 323.01395 * 14 13 12 16 16 O 1.42903 * 110.72242 * 277.04970 * 15 14 13 17 17 C 1.50697 * 110.72327 * 153.94986 * 15 14 13 18 18 H 1.07993 * 119.99713 * 2.44268 * 17 15 14 19 19 C 1.37880 * 120.00265 * 182.44086 * 17 15 14 20 20 N 1.31516 * 119.99566 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00188 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46994 * 90.00109 * 21 19 17 23 23 H 1.48500 * 109.47197 * 210.00361 * 21 19 17 24 24 H 1.48500 * 109.46832 * 330.00237 * 21 19 17 25 25 C 1.47030 * 125.64611 * 180.02562 * 12 10 9 26 26 C 1.34141 * 118.70595 * 179.97438 * 2 1 3 27 27 O 1.21225 * 119.35926 * 359.45872 * 26 2 1 28 28 H 1.09006 * 109.47169 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47493 * 119.99999 * 1 2 3 30 30 H 1.08997 * 109.47636 * 240.00305 * 1 2 3 31 31 H 1.08999 * 109.51927 * 210.99618 * 5 3 2 32 32 H 1.09001 * 109.52112 * 90.81180 * 5 3 2 33 33 H 1.09008 * 109.62056 * 295.89091 * 6 5 3 34 34 H 1.08995 * 109.62777 * 175.34045 * 6 5 3 35 35 H 0.96999 * 119.99431 * 335.00155 * 9 7 6 36 36 H 1.09000 * 110.36210 * 322.93098 * 13 12 10 37 37 H 1.08995 * 110.37029 * 85.25629 * 13 12 10 38 38 H 1.09003 * 111.18829 * 204.97963 * 14 13 12 39 39 H 1.08995 * 111.02788 * 80.97563 * 14 13 12 40 40 H 0.96700 * 114.00311 * 177.55860 * 16 15 14 41 41 H 0.96998 * 119.99594 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.88423 * 59.55979 * 25 12 10 43 43 H 1.08998 * 109.87911 * 298.38463 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1093 1.1766 0.0000 4 8 1.4682 2.2053 0.0096 5 6 3.6136 1.2441 -0.0122 6 6 4.1787 0.0000 0.6813 7 6 3.6135 -1.2443 -0.0121 8 1 3.9432 -2.1379 0.5177 9 7 4.0902 -1.2922 -1.3966 10 6 4.1673 -2.4726 -2.0423 11 8 3.8418 -3.4979 -1.4757 12 7 4.6064 -2.5167 -3.3158 13 6 5.0332 -1.3560 -4.1182 14 6 4.8386 -1.7986 -5.5949 15 6 5.2513 -3.2926 -5.5232 16 8 6.6714 -3.4294 -5.6049 17 6 4.5776 -4.0848 -6.6138 18 1 3.9433 -3.5852 -7.3309 19 6 4.7712 -5.4475 -6.6962 20 7 5.5434 -6.0559 -5.8226 21 14 3.9356 -6.4296 -8.0477 22 1 4.8194 -6.4824 -9.2399 23 1 3.6712 -7.8092 -7.5659 24 1 2.6519 -5.7779 -8.4117 25 6 4.7393 -3.7306 -4.1348 26 6 2.1092 -1.1765 0.0005 27 8 1.4680 -2.2053 0.0110 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 -0.3634 -0.5138 0.8900 31 1 3.9424 2.1378 0.5182 32 1 3.9683 1.2797 -1.0423 33 1 3.8835 0.0000 1.7306 34 1 5.2659 -0.0001 0.6042 35 1 4.3503 -0.4742 -1.8485 36 1 4.4080 -0.4911 -3.8964 37 1 6.0813 -1.1267 -3.9261 38 1 5.4970 -1.2431 -6.2628 39 1 3.7974 -1.6952 -5.9003 40 1 6.9839 -4.3412 -5.5272 41 1 5.6793 -7.0146 -5.8803 42 1 3.7698 -4.2187 -4.2341 43 1 5.4545 -4.4120 -3.6741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592033579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:39 Heat of formation + Delta-G solvation = -159.884776 kcal Electronic energy + Delta-G solvation = -28933.675620 eV Core-core repulsion = 24785.370329 eV Total energy + Delta-G solvation = -4148.305291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.91378 -41.23692 -40.01900 -39.15192 -37.25834 -36.16791 -36.09085 -34.19800 -33.70738 -31.63924 -29.71040 -29.02964 -28.65565 -26.84536 -24.58637 -24.32656 -23.77546 -21.56664 -21.31396 -19.69166 -19.13086 -18.91101 -18.64220 -18.22646 -17.72133 -17.32601 -16.95065 -16.71938 -16.29665 -15.98390 -15.81500 -15.56709 -14.97583 -14.83623 -14.73410 -14.68622 -14.34682 -14.14487 -13.85020 -13.76023 -13.50857 -13.44706 -13.32538 -12.86068 -12.56395 -12.45662 -12.32411 -12.29413 -12.29211 -12.09969 -11.79128 -11.37746 -11.28423 -11.18652 -10.89281 -10.64756 -10.41038 -10.29292 -9.48478 -8.27737 -6.42994 0.31188 1.31418 1.40097 1.42564 1.46136 1.51451 1.86291 2.08189 2.36867 2.82824 2.99379 3.00559 3.44358 3.51824 3.72987 3.79228 4.05607 4.15760 4.20022 4.24616 4.30941 4.34177 4.37548 4.46570 4.59824 4.67463 4.71284 4.79845 4.86986 5.03647 5.04924 5.13441 5.17319 5.23469 5.37473 5.48389 5.74990 5.83034 5.98770 6.09846 6.32139 6.63286 6.64048 6.96025 7.28584 7.36659 7.47202 8.78302 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.003253 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.475035 B = 8606.125514 C = 8901.427556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.569 5.569 3 C 0.522 3.478 4 O -0.532 6.532 5 C -0.137 4.137 6 C -0.118 4.118 7 C 0.150 3.850 8 H 0.118 0.882 9 N -0.713 5.713 10 C 0.709 3.291 11 O -0.627 6.627 12 N -0.632 5.632 13 C 0.106 3.894 14 C -0.112 4.112 15 C 0.234 3.766 16 O -0.585 6.585 17 C -0.560 4.560 18 H 0.066 0.934 19 C 0.027 3.973 20 N -0.915 5.915 21 Si 0.960 3.040 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.270 1.270 25 C 0.141 3.859 26 C 0.505 3.495 27 O -0.522 6.522 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.417 0.583 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.377 0.623 41 H 0.270 0.730 42 H 0.024 0.976 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 18.324 12.242 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.312 5.312 3 C 0.314 3.686 4 O -0.407 6.407 5 C -0.176 4.176 6 C -0.156 4.156 7 C 0.041 3.959 8 H 0.135 0.865 9 N -0.375 5.375 10 C 0.411 3.589 11 O -0.508 6.508 12 N -0.368 5.368 13 C -0.016 4.016 14 C -0.150 4.150 15 C 0.194 3.806 16 O -0.393 6.393 17 C -0.598 4.598 18 H 0.084 0.916 19 C -0.174 4.174 20 N -0.554 5.554 21 Si 0.786 3.214 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.194 1.194 25 C 0.017 3.983 26 C 0.292 3.708 27 O -0.393 6.393 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.170 0.830 32 H 0.147 0.853 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.256 0.744 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.379 18.048 12.715 22.121 hybrid contribution -0.808 -1.844 -0.924 2.216 sum -2.187 16.204 11.791 20.159 Atomic orbital electron populations 1.21975 0.77996 1.05114 1.03461 1.46720 1.10350 1.08003 1.66172 1.21847 0.93148 0.81243 0.72339 1.90725 1.69712 1.33660 1.46612 1.22137 0.86093 1.02757 1.06635 1.22197 1.04955 0.87733 1.00665 1.21209 0.86000 1.04845 0.83884 0.86465 1.44740 1.71169 1.07901 1.13673 1.15758 0.78326 0.84304 0.80533 1.90937 1.57446 1.34898 1.67469 1.47871 1.67197 1.11008 1.10771 1.22555 1.00887 0.87812 0.90309 1.22805 1.01722 0.94637 0.95824 1.19677 0.79110 0.93034 0.88819 1.86068 1.23448 1.33606 1.96201 1.21875 1.30371 0.93320 1.14243 0.91593 1.25784 0.95073 0.98784 0.97762 1.69738 1.38405 1.10952 1.36338 0.85516 0.79045 0.77552 0.79318 1.19526 1.21233 1.19431 1.22372 0.98305 0.85265 0.92372 1.22177 0.92880 0.82082 0.73644 1.90782 1.69478 1.34868 1.44172 0.87595 0.91747 0.90298 0.83022 0.85264 0.86617 0.84375 0.74376 0.87963 0.89880 0.88784 0.90349 0.77351 0.92036 0.95763 0.95155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.17 9.81 127.77 1.25 2.42 16 2 N -0.57 -12.04 2.93 -781.16 -2.29 -14.33 16 3 C 0.52 8.65 7.48 87.72 0.66 9.30 16 4 O -0.53 -11.85 16.19 -2.84 -0.05 -11.90 16 5 C -0.14 -0.85 5.88 29.89 0.18 -0.68 16 6 C -0.12 -0.77 5.73 30.75 0.18 -0.59 16 7 C 0.15 2.98 2.75 44.29 0.12 3.10 16 8 H 0.12 2.83 7.57 -2.39 -0.02 2.81 16 9 N -0.71 -16.50 4.95 -461.19 -2.28 -18.78 16 10 C 0.71 26.59 8.45 179.06 1.51 28.10 16 11 O -0.63 -30.38 16.33 -3.99 -0.07 -30.45 16 12 N -0.63 -24.37 3.33 -828.79 -2.76 -27.13 16 13 C 0.11 3.04 6.58 87.02 0.57 3.61 16 14 C -0.11 -4.00 6.26 32.16 0.20 -3.80 16 15 C 0.23 11.04 0.85 -10.35 -0.01 11.03 16 16 O -0.58 -28.56 13.07 -148.98 -1.95 -30.51 16 17 C -0.56 -29.23 8.11 25.60 0.21 -29.02 16 18 H 0.07 3.36 7.77 -2.91 -0.02 3.33 16 19 C 0.03 1.42 5.27 84.66 0.45 1.86 16 20 N -0.91 -49.82 10.96 21.45 0.24 -49.58 16 21 Si 0.96 42.33 29.54 68.60 2.03 44.35 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 C 0.14 6.93 5.38 86.73 0.47 7.39 16 26 C 0.50 13.12 7.03 87.72 0.62 13.74 16 27 O -0.52 -19.29 16.93 -2.86 -0.05 -19.34 16 28 H 0.11 1.99 6.73 -2.38 -0.02 1.98 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.13 0.38 6.81 -2.39 -0.02 0.36 16 33 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.42 6.20 5.63 -92.71 -0.52 5.68 16 36 H 0.10 1.97 7.30 -2.39 -0.02 1.95 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.08 2.75 8.04 -2.39 -0.02 2.73 16 40 H 0.38 19.51 7.23 -74.06 -0.54 18.97 16 41 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.02 1.35 7.81 -2.39 -0.02 1.33 16 43 H 0.03 1.66 8.00 -2.39 -0.02 1.64 16 Total: -1.00 -81.04 353.31 -0.76 -81.80 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.01 Total: 29.39 kcal Atomic # 6 Polarization: 40.07 SS G_CDS: 6.40 Total: 46.47 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -7.09 Total: -109.82 kcal Atomic # 8 Polarization: -90.08 SS G_CDS: -2.11 Total: -92.19 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -81.04 -0.76 -81.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.084 kcal (2) G-P(sol) polarization free energy of solvation -81.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds