Wall clock time and date at job start Fri Apr 10 2020 18:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47003 * 269.99571 * 3 2 1 5 5 H 1.48501 * 109.47359 * 29.99798 * 3 2 1 6 6 H 1.48497 * 109.47369 * 149.99651 * 3 2 1 7 7 C 1.37876 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00224 * 0.02562 * 7 2 1 10 10 O 1.42896 * 110.87368 * 62.38813 * 9 7 2 11 11 C 1.55139 * 110.98790 * 298.54412 * 9 7 2 12 12 C 1.54321 * 103.01657 * 206.25591 * 11 9 7 13 13 N 1.47443 * 107.23636 * 22.28116 * 12 11 9 14 14 C 1.46902 * 110.99921 * 123.25524 * 13 12 11 15 15 C 1.52999 * 109.46630 * 69.87769 * 14 13 12 16 16 H 1.09005 * 109.47298 * 60.00026 * 15 14 13 17 17 O 1.42898 * 109.47520 * 299.99588 * 15 14 13 18 18 C 1.53002 * 109.46954 * 179.97438 * 15 14 13 19 19 O 1.42905 * 109.47079 * 184.99891 * 18 15 14 20 20 C 1.35950 * 116.99802 * 180.02562 * 19 18 15 21 21 C 1.38708 * 120.03026 * 359.72477 * 20 19 18 22 22 C 1.38148 * 119.96893 * 179.78884 * 21 20 19 23 23 C 1.38453 * 120.02995 * 0.48957 * 22 21 20 24 24 F 1.35097 * 119.97318 * 179.72219 * 23 22 21 25 25 C 1.38459 * 120.05793 * 359.74257 * 23 22 21 26 26 C 1.38144 * 120.03434 * 0.02562 * 25 23 22 27 27 C 1.47847 * 108.56594 * 0.99309 * 13 12 11 28 28 H 0.96996 * 119.99637 * 0.02562 * 1 2 3 29 29 H 0.96703 * 114.00123 * 297.60909 * 10 9 7 30 30 H 1.08993 * 110.70978 * 87.87374 * 11 9 7 31 31 H 1.08999 * 110.70592 * 324.63574 * 11 9 7 32 32 H 1.09005 * 109.88729 * 262.87380 * 12 11 9 33 33 H 1.09001 * 109.88873 * 141.69187 * 12 11 9 34 34 H 1.09001 * 109.47525 * 309.88197 * 14 13 12 35 35 H 1.08995 * 109.46842 * 189.87628 * 14 13 12 36 36 H 0.96698 * 114.00197 * 300.00596 * 17 15 14 37 37 H 1.09004 * 109.46930 * 65.00118 * 18 15 14 38 38 H 1.09000 * 109.47312 * 305.00062 * 18 15 14 39 39 H 1.08003 * 120.01532 * 0.02562 * 21 20 19 40 40 H 1.08004 * 119.98636 * 180.21131 * 22 21 20 41 41 H 1.08006 * 119.98069 * 180.02562 * 25 23 22 42 42 H 1.07994 * 120.01804 * 180.02562 * 26 25 23 43 43 H 1.08997 * 110.37750 * 94.72972 * 27 13 12 44 44 H 1.09000 * 110.37546 * 217.07171 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4610 -2.6310 -1.1828 11 6 0.3733 -2.6341 1.2726 12 6 0.2531 -4.1622 1.4516 13 7 1.3917 -4.7758 0.7438 14 6 2.1854 -5.6149 1.6515 15 6 1.3824 -6.8623 2.0258 16 1 1.1455 -7.4263 1.1235 17 8 0.1709 -6.4719 2.6753 18 6 2.2092 -7.7366 2.9707 19 8 1.5084 -8.9551 3.2279 20 6 2.1098 -9.8502 4.0558 21 6 3.3512 -9.5632 4.6040 22 6 3.9593 -10.4717 5.4486 23 6 3.3348 -11.6726 5.7399 24 9 3.9330 -12.5626 6.5615 25 6 2.0978 -11.9623 5.1894 26 6 1.4852 -11.0536 4.3483 27 6 2.2185 -3.6986 0.1593 28 1 -0.4849 0.8400 -0.0004 29 1 -0.2246 -1.9553 -1.2754 30 1 -0.6076 -2.1864 1.1134 31 1 0.8689 -2.1832 2.1324 32 1 -0.6845 -4.5134 1.0204 33 1 0.2945 -4.4159 2.5108 34 1 2.4222 -5.0511 2.5538 35 1 3.1094 -5.9127 1.1561 36 1 0.3058 -5.9650 3.4876 37 1 2.3710 -7.2056 3.9088 38 1 3.1711 -7.9610 2.5097 39 1 3.8405 -8.6283 4.3737 40 1 4.9243 -10.2471 5.8784 41 1 1.6115 -12.8993 5.4178 42 1 0.5202 -11.2797 3.9195 43 1 3.0361 -3.4401 0.8322 44 1 2.6076 -4.0035 -0.8122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592144888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:52 Heat of formation + Delta-G solvation = -146.062139 kcal Electronic energy + Delta-G solvation = -27162.540999 eV Core-core repulsion = 22994.915141 eV Total energy + Delta-G solvation = -4167.625858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.12601 -40.48928 -38.98278 -37.71523 -36.58170 -34.35343 -32.14992 -31.80437 -31.33434 -29.87596 -28.63999 -28.08733 -25.77458 -24.21124 -23.34895 -22.41422 -21.63896 -20.17466 -19.53953 -18.60981 -17.72174 -17.23217 -16.97814 -16.76893 -16.03998 -15.86312 -15.38218 -15.10123 -14.94615 -14.83845 -14.56146 -14.15975 -14.04697 -13.88364 -13.63326 -13.28929 -12.76488 -12.72160 -12.50658 -12.46888 -12.23959 -11.68622 -11.38016 -11.26860 -11.20067 -11.17366 -11.09230 -10.84283 -10.77558 -10.44620 -10.39095 -9.88201 -9.69408 -9.58451 -9.19057 -8.61089 -8.43615 -8.07688 -7.66187 -6.22999 -4.31608 0.76636 0.85959 2.75311 3.19745 3.20174 3.27114 3.29298 3.95776 4.21273 4.27703 4.30378 4.36639 4.44041 4.69160 4.77555 4.83042 4.95967 5.01144 5.06605 5.07290 5.26147 5.31701 5.48774 5.64553 5.73187 5.74407 5.77397 5.85709 5.90881 6.02637 6.11241 6.19857 6.33115 6.51501 6.66363 6.88708 7.02858 7.07712 7.39970 7.48773 7.60324 7.61655 7.72578 7.81079 8.14448 8.70528 9.37159 9.51175 10.83768 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.032127 B = 0.002037 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.321572 B =13739.213300 C =14171.402800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.252 3.748 10 O -0.579 6.579 11 C -0.149 4.149 12 C 0.053 3.947 13 N -0.521 5.521 14 C 0.022 3.978 15 C 0.118 3.882 16 H 0.116 0.884 17 O -0.541 6.541 18 C 0.026 3.974 19 O -0.297 6.297 20 C 0.126 3.874 21 C -0.184 4.184 22 C -0.111 4.111 23 C 0.053 3.947 24 F -0.143 7.143 25 C -0.112 4.112 26 C -0.125 4.125 27 C 0.058 3.942 28 H 0.266 0.734 29 H 0.377 0.623 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.368 0.632 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.045 0.955 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -18.693 10.938 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.211 3.789 10 O -0.387 6.387 11 C -0.188 4.188 12 C -0.074 4.074 13 N -0.245 5.245 14 C -0.107 4.107 15 C 0.058 3.942 16 H 0.134 0.866 17 O -0.347 6.347 18 C -0.050 4.050 19 O -0.210 6.210 20 C 0.080 3.920 21 C -0.203 4.203 22 C -0.130 4.130 23 C 0.033 3.967 24 F -0.122 7.122 25 C -0.131 4.131 26 C -0.143 4.143 27 C -0.069 4.069 28 H 0.076 0.924 29 H 0.226 0.774 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.216 0.784 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.064 0.936 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.541 -19.767 9.875 22.559 hybrid contribution 1.145 2.205 1.546 2.926 sum 5.686 -17.562 11.421 21.707 Atomic orbital electron populations 1.69743 1.05905 1.27382 1.50193 1.25005 0.94995 0.99404 0.93734 0.86486 0.79752 0.82788 0.78308 1.20415 1.21109 1.19909 1.21535 0.93458 0.90744 1.51808 0.92214 1.19518 0.86878 0.90431 0.82056 1.86141 1.51390 1.56690 1.44446 1.23318 1.02576 0.92552 1.00334 1.22904 0.94118 0.94967 0.95401 1.63497 1.08669 1.21603 1.30701 1.22725 0.96861 0.94732 0.96394 1.21945 0.84728 0.92868 0.94688 0.86645 1.86755 1.30151 1.75621 1.42125 1.23737 0.96725 0.84185 1.00346 1.86200 1.45914 1.27436 1.61480 1.19125 0.91530 0.90292 0.91046 1.21171 0.95882 1.01651 1.01598 1.20945 1.00791 0.92551 0.98749 1.17578 0.93773 0.89231 0.96085 1.91487 1.83377 1.67109 1.70222 1.20969 0.93980 1.00605 0.97573 1.20327 1.01613 0.91751 1.00625 1.23020 0.95161 0.90464 0.98265 0.92368 0.77390 0.90471 0.92904 0.91409 0.94092 0.94647 0.90265 0.78396 0.91613 0.90841 0.84428 0.84505 0.84078 0.83971 0.93637 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 10.75 55.43 0.60 -23.02 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 3 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.15 8.27 -34.44 -0.28 -14.43 16 8 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 9 C 0.25 6.15 0.87 -89.63 -0.08 6.07 16 10 O -0.58 -15.13 13.16 -35.23 -0.46 -15.59 16 11 C -0.15 -3.35 5.37 -24.91 -0.13 -3.49 16 12 C 0.05 1.02 5.51 -2.83 -0.02 1.00 16 13 N -0.52 -9.59 5.16 -231.24 -1.19 -10.78 16 14 C 0.02 0.30 4.46 -3.82 -0.02 0.29 16 15 C 0.12 1.42 3.50 -26.73 -0.09 1.33 16 16 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 17 O -0.54 -7.24 10.92 -40.06 -0.44 -7.68 16 18 C 0.03 0.25 4.38 37.16 0.16 0.41 16 19 O -0.30 -3.31 10.10 -24.42 -0.25 -3.56 16 20 C 0.13 1.25 6.69 -39.23 -0.26 0.99 16 21 C -0.18 -1.58 9.04 -39.44 -0.36 -1.93 16 22 C -0.11 -0.93 10.02 -39.54 -0.40 -1.33 16 23 C 0.05 0.48 7.30 -39.42 -0.29 0.19 16 24 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 25 C -0.11 -0.92 10.02 -39.53 -0.40 -1.32 16 26 C -0.12 -1.11 9.98 -39.44 -0.39 -1.50 16 27 C 0.06 1.21 5.86 -2.29 -0.01 1.20 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.38 9.92 7.56 45.56 0.34 10.26 16 30 H 0.08 1.88 7.54 -51.93 -0.39 1.48 16 31 H 0.05 1.21 8.03 -51.93 -0.42 0.79 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.04 0.67 5.20 -51.93 -0.27 0.40 16 34 H 0.04 0.46 7.96 -51.93 -0.41 0.04 16 35 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 36 H 0.37 3.84 7.93 45.56 0.36 4.20 16 37 H 0.07 0.52 7.67 -51.93 -0.40 0.13 16 38 H 0.07 0.58 7.65 -51.93 -0.40 0.18 16 39 H 0.14 0.95 6.30 -52.48 -0.33 0.62 16 40 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 42 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.05 0.91 7.70 -51.93 -0.40 0.51 16 44 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -29.46 361.07 -8.76 -38.22 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -4.81 Total: 13.76 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.66 Total: -10.76 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: -0.60 Total: -33.80 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.15 Total: -26.83 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.46 -8.76 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.847 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds