Wall clock time and date at job start Fri Apr 10 2020 18:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47003 * 269.99571 * 3 2 1 5 5 H 1.48501 * 109.47359 * 29.99798 * 3 2 1 6 6 H 1.48497 * 109.47369 * 149.99651 * 3 2 1 7 7 C 1.37876 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00224 * 0.02562 * 7 2 1 10 10 O 1.42896 * 110.87368 * 62.38813 * 9 7 2 11 11 C 1.55139 * 110.98790 * 298.54412 * 9 7 2 12 12 C 1.54321 * 103.01657 * 206.25591 * 11 9 7 13 13 N 1.47443 * 107.23636 * 22.28116 * 12 11 9 14 14 C 1.46902 * 110.99921 * 123.25524 * 13 12 11 15 15 C 1.52999 * 109.46630 * 69.87769 * 14 13 12 16 16 H 1.09005 * 109.47298 * 60.00026 * 15 14 13 17 17 O 1.42898 * 109.47520 * 299.99588 * 15 14 13 18 18 C 1.53002 * 109.46954 * 179.97438 * 15 14 13 19 19 O 1.42905 * 109.47079 * 184.99891 * 18 15 14 20 20 C 1.35950 * 116.99802 * 180.02562 * 19 18 15 21 21 C 1.38708 * 120.03026 * 359.72477 * 20 19 18 22 22 C 1.38148 * 119.96893 * 179.78884 * 21 20 19 23 23 C 1.38453 * 120.02995 * 0.48957 * 22 21 20 24 24 F 1.35097 * 119.97318 * 179.72219 * 23 22 21 25 25 C 1.38459 * 120.05793 * 359.74257 * 23 22 21 26 26 C 1.38144 * 120.03434 * 0.02562 * 25 23 22 27 27 C 1.47847 * 108.56594 * 0.99309 * 13 12 11 28 28 H 0.96996 * 119.99637 * 0.02562 * 1 2 3 29 29 H 0.96703 * 114.00123 * 297.60909 * 10 9 7 30 30 H 1.08993 * 110.70978 * 87.87374 * 11 9 7 31 31 H 1.08999 * 110.70592 * 324.63574 * 11 9 7 32 32 H 1.09005 * 109.88729 * 262.87380 * 12 11 9 33 33 H 1.09001 * 109.88873 * 141.69187 * 12 11 9 34 34 H 1.09001 * 109.47525 * 309.88197 * 14 13 12 35 35 H 1.08995 * 109.46842 * 189.87628 * 14 13 12 36 36 H 0.96698 * 114.00197 * 300.00596 * 17 15 14 37 37 H 1.09004 * 109.46930 * 65.00118 * 18 15 14 38 38 H 1.09000 * 109.47312 * 305.00062 * 18 15 14 39 39 H 1.08003 * 120.01532 * 0.02562 * 21 20 19 40 40 H 1.08004 * 119.98636 * 180.21131 * 22 21 20 41 41 H 1.08006 * 119.98069 * 180.02562 * 25 23 22 42 42 H 1.07994 * 120.01804 * 180.02562 * 26 25 23 43 43 H 1.08997 * 110.37750 * 94.72972 * 27 13 12 44 44 H 1.09000 * 110.37546 * 217.07171 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4610 -2.6310 -1.1828 11 6 0.3733 -2.6341 1.2726 12 6 0.2531 -4.1622 1.4516 13 7 1.3917 -4.7758 0.7438 14 6 2.1854 -5.6149 1.6515 15 6 1.3824 -6.8623 2.0258 16 1 1.1455 -7.4263 1.1235 17 8 0.1709 -6.4719 2.6753 18 6 2.2092 -7.7366 2.9707 19 8 1.5084 -8.9551 3.2279 20 6 2.1098 -9.8502 4.0558 21 6 3.3512 -9.5632 4.6040 22 6 3.9593 -10.4717 5.4486 23 6 3.3348 -11.6726 5.7399 24 9 3.9330 -12.5626 6.5615 25 6 2.0978 -11.9623 5.1894 26 6 1.4852 -11.0536 4.3483 27 6 2.2185 -3.6986 0.1593 28 1 -0.4849 0.8400 -0.0004 29 1 -0.2246 -1.9553 -1.2754 30 1 -0.6076 -2.1864 1.1134 31 1 0.8689 -2.1832 2.1324 32 1 -0.6845 -4.5134 1.0204 33 1 0.2945 -4.4159 2.5108 34 1 2.4222 -5.0511 2.5538 35 1 3.1094 -5.9127 1.1561 36 1 0.3058 -5.9650 3.4876 37 1 2.3710 -7.2056 3.9088 38 1 3.1711 -7.9610 2.5097 39 1 3.8405 -8.6283 4.3737 40 1 4.9243 -10.2471 5.8784 41 1 1.6115 -12.8993 5.4178 42 1 0.5202 -11.2797 3.9195 43 1 3.0361 -3.4401 0.8322 44 1 2.6076 -4.0035 -0.8122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592144888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:51 Heat of formation + Delta-G solvation = -168.138963 kcal Electronic energy + Delta-G solvation = -27163.498322 eV Core-core repulsion = 22994.915141 eV Total energy + Delta-G solvation = -4168.583181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.82782 -41.21800 -40.32975 -38.73431 -37.64891 -35.99056 -34.17182 -32.73749 -32.20096 -30.86468 -29.82278 -29.74365 -27.17064 -25.66198 -24.13589 -23.20238 -22.56166 -21.68304 -21.34312 -19.33002 -18.98921 -18.40830 -17.94314 -17.65196 -17.01319 -16.88044 -16.77376 -16.50933 -16.20423 -15.91533 -15.72591 -15.39935 -15.23841 -14.77892 -14.49152 -14.29525 -14.07164 -13.92777 -13.80639 -13.51427 -13.36980 -13.19997 -13.04664 -12.86649 -12.72505 -12.57024 -12.23880 -12.19185 -12.08132 -11.83315 -11.65528 -11.58193 -11.12830 -10.82091 -10.54090 -10.19635 -10.02858 -9.12596 -9.10976 -8.20541 -6.36695 0.15434 0.19087 1.40122 1.42590 1.51164 2.00605 2.38189 2.56022 3.03435 3.16427 3.32411 3.45930 3.66327 3.78714 3.86183 3.97934 4.00409 4.06771 4.12197 4.21124 4.27544 4.31673 4.40755 4.44158 4.52563 4.63753 4.69270 4.83508 4.90141 4.96849 5.06757 5.11316 5.14335 5.14879 5.22465 5.33764 5.52383 5.57824 5.69473 5.82713 5.99256 6.23749 6.30458 6.38524 6.69694 6.81322 7.34930 7.46114 8.84426 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.032127 B = 0.002037 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.321572 B =13739.213300 C =14171.402800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.559 4.559 8 H 0.056 0.944 9 C 0.230 3.770 10 O -0.590 6.590 11 C -0.140 4.140 12 C 0.067 3.933 13 N -0.532 5.532 14 C 0.022 3.978 15 C 0.125 3.875 16 H 0.098 0.902 17 O -0.562 6.562 18 C 0.031 3.969 19 O -0.317 6.317 20 C 0.111 3.889 21 C -0.184 4.184 22 C -0.113 4.113 23 C 0.036 3.964 24 F -0.150 7.150 25 C -0.111 4.111 26 C -0.134 4.134 27 C 0.067 3.933 28 H 0.267 0.733 29 H 0.371 0.629 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.381 0.619 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.149 0.851 43 H 0.056 0.944 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.364 -19.290 12.247 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.173 4.173 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.598 4.598 8 H 0.074 0.926 9 C 0.190 3.810 10 O -0.397 6.397 11 C -0.179 4.179 12 C -0.060 4.060 13 N -0.256 5.256 14 C -0.107 4.107 15 C 0.065 3.935 16 H 0.116 0.884 17 O -0.369 6.369 18 C -0.044 4.044 19 O -0.231 6.231 20 C 0.065 3.935 21 C -0.202 4.202 22 C -0.132 4.132 23 C 0.017 3.983 24 F -0.129 7.129 25 C -0.130 4.130 26 C -0.152 4.152 27 C -0.060 4.060 28 H 0.077 0.923 29 H 0.219 0.781 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.231 0.769 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.177 0.823 42 H 0.167 0.833 43 H 0.074 0.926 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.002 -20.383 11.199 24.019 hybrid contribution 0.678 2.350 1.135 2.696 sum 6.680 -18.033 12.335 22.847 Atomic orbital electron populations 1.69843 1.06884 1.28021 1.50278 1.25718 0.95813 1.02326 0.93410 0.85544 0.78753 0.79088 0.78126 1.20440 1.20719 1.19289 1.21826 0.93511 0.92097 1.52333 0.92589 1.19850 0.87643 0.91488 0.82029 1.86135 1.51424 1.56451 1.45739 1.23126 1.00583 0.95020 0.99186 1.22739 0.93895 0.92190 0.97219 1.63372 1.08895 1.20813 1.32552 1.22843 0.97076 0.94502 0.96253 1.21773 0.84460 0.92415 0.94857 0.88417 1.86724 1.31174 1.76015 1.43014 1.23652 0.96457 0.83599 1.00699 1.86150 1.46788 1.28091 1.62061 1.19329 0.92276 0.90453 0.91461 1.21363 0.95389 1.02353 1.01145 1.21187 1.01454 0.92116 0.98435 1.17837 0.94334 0.89644 0.96485 1.91469 1.83534 1.67409 1.70502 1.21168 0.93726 1.01167 0.96928 1.20507 1.02072 0.91804 1.00863 1.22841 0.94804 0.89876 0.98491 0.92321 0.78139 0.93064 0.93583 0.93099 0.90925 0.93025 0.88472 0.76946 0.89650 0.88924 0.82575 0.82739 0.82297 0.83321 0.92560 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.78 10.75 21.45 0.23 -48.55 16 2 C 0.03 1.47 5.29 84.65 0.45 1.91 16 3 Si 0.96 41.61 29.54 68.60 2.03 43.64 16 4 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.56 -29.60 8.27 25.60 0.21 -29.38 16 8 H 0.06 2.92 7.79 -2.91 -0.02 2.90 16 9 C 0.23 11.32 0.87 -10.15 -0.01 11.31 16 10 O -0.59 -31.57 13.16 -148.98 -1.96 -33.53 16 11 C -0.14 -6.35 5.37 31.78 0.17 -6.18 16 12 C 0.07 2.49 5.51 86.65 0.48 2.97 16 13 N -0.53 -18.89 5.16 -885.52 -4.57 -23.45 16 14 C 0.02 0.53 4.46 86.30 0.38 0.92 16 15 C 0.12 2.73 3.50 30.59 0.11 2.84 16 16 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 17 O -0.56 -13.94 10.92 -144.36 -1.58 -15.52 16 18 C 0.03 0.50 4.38 71.98 0.31 0.81 16 19 O -0.32 -6.44 10.10 -88.37 -0.89 -7.33 16 20 C 0.11 1.98 6.69 22.49 0.15 2.13 16 21 C -0.18 -2.68 9.04 22.36 0.20 -2.48 16 22 C -0.11 -1.64 10.02 22.30 0.22 -1.42 16 23 C 0.04 0.61 7.30 22.37 0.16 0.77 16 24 F -0.15 -2.78 17.27 44.97 0.78 -2.00 16 25 C -0.11 -1.66 10.02 22.30 0.22 -1.44 16 26 C -0.13 -2.20 9.98 22.36 0.22 -1.97 16 27 C 0.07 2.77 5.86 86.77 0.51 3.28 16 28 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 29 H 0.37 20.21 7.56 -74.06 -0.56 19.65 16 30 H 0.05 2.55 7.54 -2.39 -0.02 2.53 16 31 H 0.05 2.10 8.03 -2.39 -0.02 2.08 16 32 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.07 2.22 5.20 -2.39 -0.01 2.21 16 34 H 0.05 1.14 7.96 -2.39 -0.02 1.12 16 35 H 0.10 2.05 8.07 -2.39 -0.02 2.03 16 36 H 0.38 6.94 7.93 -74.06 -0.59 6.35 16 37 H 0.09 1.03 7.67 -2.38 -0.02 1.01 16 38 H 0.09 1.11 7.65 -2.39 -0.02 1.10 16 39 H 0.16 1.59 6.30 -2.91 -0.02 1.57 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 42 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.06 2.16 7.70 -2.39 -0.02 2.14 16 44 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -63.54 361.07 -2.27 -65.81 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: -0.11 Total: 36.87 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 3.80 Total: -15.94 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -4.34 Total: -72.00 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -4.43 Total: -56.38 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -63.54 -2.27 -65.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.330 kcal (2) G-P(sol) polarization free energy of solvation -63.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds