Wall clock time and date at job start Fri Apr 10 2020 18:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48496 * 109.46952 * 264.99357 * 3 2 1 5 5 H 1.48497 * 109.47013 * 24.99239 * 3 2 1 6 6 H 1.48501 * 109.46962 * 144.99145 * 3 2 1 7 7 C 1.37878 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00024 * 185.71588 * 7 2 1 9 9 C 1.50701 * 120.00007 * 5.71379 * 7 2 1 10 10 O 1.42908 * 110.62596 * 59.41159 * 9 7 2 11 11 C 1.55135 * 110.70615 * 296.11625 * 9 7 2 12 12 C 1.54908 * 101.65056 * 205.96431 * 11 9 7 13 13 N 1.47844 * 104.80027 * 37.06938 * 12 11 9 14 14 C 1.46897 * 111.00436 * 213.63926 * 13 12 11 15 15 C 1.53002 * 109.46962 * 290.84173 * 14 13 12 16 16 H 1.09007 * 109.46873 * 305.00184 * 15 14 13 17 17 O 1.42903 * 109.47118 * 64.99708 * 15 14 13 18 18 C 1.52992 * 109.47237 * 184.99942 * 15 14 13 19 19 O 1.42901 * 109.47174 * 175.00145 * 18 15 14 20 20 C 1.35963 * 116.99867 * 180.02562 * 19 18 15 21 21 C 1.38651 * 120.06542 * 359.71620 * 20 19 18 22 22 C 1.38177 * 119.97367 * 179.75280 * 21 20 19 23 23 C 1.38271 * 120.09127 * 0.52725 * 22 21 20 24 24 C 1.38250 * 120.12341 * 359.74971 * 23 22 21 25 25 C 1.38329 * 120.03422 * 359.97327 * 24 23 22 26 26 F 1.35106 * 120.05337 * 180.02562 * 25 24 23 27 27 C 1.47443 * 108.56294 * 335.90542 * 13 12 11 28 28 H 0.97002 * 119.99993 * 0.02562 * 1 2 3 29 29 H 0.96699 * 113.99794 * 297.49063 * 10 9 7 30 30 H 1.09002 * 110.99027 * 324.05378 * 11 9 7 31 31 H 1.08995 * 110.99302 * 87.83613 * 11 9 7 32 32 H 1.09002 * 110.37739 * 278.23627 * 12 11 9 33 33 H 1.09006 * 110.37484 * 155.90123 * 12 11 9 34 34 H 1.08999 * 109.47430 * 170.84058 * 14 13 12 35 35 H 1.09001 * 109.46966 * 50.83582 * 14 13 12 36 36 H 0.96699 * 114.00313 * 60.00115 * 17 15 14 37 37 H 1.09003 * 109.47351 * 294.99573 * 18 15 14 38 38 H 1.09003 * 109.47250 * 54.99952 * 18 15 14 39 39 H 1.08005 * 120.01462 * 0.02590 * 21 20 19 40 40 H 1.08002 * 119.95786 * 180.27720 * 22 21 20 41 41 H 1.07998 * 119.93225 * 179.76999 * 23 22 21 42 42 H 1.08004 * 119.98131 * 180.02562 * 24 23 22 43 43 H 1.09004 * 109.89062 * 120.39143 * 27 13 12 44 44 H 1.08998 * 109.88943 * 241.58634 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3977 2.6809 0.5915 6 1 3.4898 1.4731 0.8032 7 6 2.0046 -1.1941 0.0005 8 1 3.0805 -1.1964 0.0937 9 6 1.2567 -2.4960 -0.1288 10 8 0.5182 -2.5330 -1.3517 11 6 0.3203 -2.7140 1.0887 12 6 0.2090 -4.2586 1.1252 13 7 1.5534 -4.7432 0.7463 14 6 1.4662 -5.9967 -0.0145 15 6 0.9950 -7.1220 0.9089 16 1 1.6561 -7.1833 1.7735 17 8 -0.3382 -6.8520 1.3469 18 6 1.0234 -8.4501 0.1500 19 8 0.6956 -9.5163 1.0433 20 6 0.6767 -10.7727 0.5241 21 6 0.9615 -10.9742 -0.8178 22 6 0.9467 -12.2525 -1.3423 23 6 0.6374 -13.3303 -0.5332 24 6 0.3472 -13.1333 0.8040 25 6 0.3661 -11.8564 1.3358 26 9 0.0830 -11.6635 2.6427 27 6 2.2263 -3.6933 -0.0405 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1653 -1.8522 -1.4191 30 1 0.7745 -2.3335 2.0036 31 1 -0.6539 -2.2556 0.9190 32 1 -0.5348 -4.6026 0.4065 33 1 -0.0473 -4.5970 2.1291 34 1 2.4474 -6.2454 -0.4189 35 1 0.7559 -5.8766 -0.8325 36 1 -0.9820 -6.7839 0.6286 37 1 0.2968 -8.4202 -0.6620 38 1 2.0201 -8.6131 -0.2601 39 1 1.1993 -10.1328 -1.4519 40 1 1.1730 -12.4096 -2.3866 41 1 0.6230 -14.3279 -0.9467 42 1 0.1063 -13.9768 1.4340 43 1 3.1468 -3.3890 0.4577 44 1 2.4487 -4.0648 -1.0408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:55 Heat of formation + Delta-G solvation = -148.343696 kcal Electronic energy + Delta-G solvation = -27490.829935 eV Core-core repulsion = 23323.105142 eV Total energy + Delta-G solvation = -4167.724794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.95749 -40.36585 -38.91506 -37.85167 -36.63230 -34.38904 -32.14858 -31.54782 -31.03434 -30.21975 -28.71999 -28.08884 -25.72843 -24.14553 -23.01918 -22.59605 -21.53448 -20.23596 -19.47858 -18.67452 -17.50272 -17.12254 -17.00525 -16.79432 -16.17223 -15.80233 -15.29389 -15.04648 -14.89399 -14.72908 -14.69194 -14.47178 -14.05124 -13.77824 -13.33716 -13.07446 -13.05059 -12.60379 -12.22434 -12.10984 -11.97612 -11.74246 -11.58797 -11.42518 -11.30675 -11.24601 -10.91868 -10.78536 -10.60918 -10.47000 -10.37489 -9.98706 -9.66774 -9.31041 -9.24063 -8.65721 -8.50440 -8.10533 -7.68983 -6.20547 -4.27392 0.76520 0.91743 2.70898 3.22896 3.23350 3.30040 3.33062 3.92412 4.26107 4.31780 4.35839 4.42941 4.52077 4.74102 4.82680 4.86005 4.94812 5.03288 5.05614 5.09525 5.24672 5.39161 5.60887 5.67428 5.69471 5.72769 5.81837 6.01239 6.07245 6.13320 6.18862 6.29753 6.31864 6.39318 6.65446 6.93684 7.01430 7.11461 7.41849 7.53477 7.65009 7.66769 7.74596 7.81910 8.15123 8.73471 9.35649 9.42860 10.86164 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.036547 B = 0.002169 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.944278 B =12905.191025 C =13221.054629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.235 3.765 10 O -0.592 6.592 11 C -0.132 4.132 12 C 0.051 3.949 13 N -0.525 5.525 14 C 0.026 3.974 15 C 0.117 3.883 16 H 0.116 0.884 17 O -0.543 6.543 18 C 0.027 3.973 19 O -0.294 6.294 20 C 0.102 3.898 21 C -0.186 4.186 22 C -0.089 4.089 23 C -0.134 4.134 24 C -0.117 4.117 25 C 0.067 3.933 26 F -0.131 7.131 27 C 0.057 3.943 28 H 0.266 0.734 29 H 0.379 0.621 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.369 0.631 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 -23.383 -2.666 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.194 3.806 10 O -0.400 6.400 11 C -0.170 4.170 12 C -0.076 4.076 13 N -0.249 5.249 14 C -0.104 4.104 15 C 0.057 3.943 16 H 0.133 0.867 17 O -0.348 6.348 18 C -0.049 4.049 19 O -0.207 6.207 20 C 0.055 3.945 21 C -0.205 4.205 22 C -0.108 4.108 23 C -0.153 4.153 24 C -0.136 4.136 25 C 0.047 3.953 26 F -0.110 7.110 27 C -0.070 4.070 28 H 0.076 0.924 29 H 0.228 0.772 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.216 0.784 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.099 0.901 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.761 -23.796 -1.491 23.855 hybrid contribution -0.578 1.626 -1.267 2.141 sum 0.183 -22.170 -2.758 22.342 Atomic orbital electron populations 1.69757 1.05928 1.27347 1.50491 1.25008 0.94988 0.99454 0.93758 0.86494 0.79816 0.82681 0.78320 1.20485 1.21194 1.19824 1.21553 0.93932 0.90814 1.50752 0.92056 1.19734 0.87672 0.91775 0.81378 1.86096 1.53917 1.58923 1.41078 1.23204 1.01709 0.91541 1.00581 1.23101 0.88159 0.96765 0.99556 1.63614 1.19221 1.02589 1.39453 1.22770 1.01104 0.91957 0.94552 1.21962 0.85578 0.88305 0.98432 0.86654 1.86712 1.17261 1.93768 1.37021 1.23750 1.01053 0.86935 0.93134 1.86243 1.84380 1.12012 1.38032 1.19130 0.98048 0.85005 0.92320 1.21233 1.06478 0.99236 0.93507 1.21040 0.97797 0.91676 1.00240 1.20926 1.01914 0.99597 0.92824 1.21039 1.01178 0.94762 0.96644 1.17044 1.07245 0.92242 0.78807 1.91523 1.91321 1.95860 1.32275 1.22860 0.97984 0.91096 0.95018 0.92437 0.77183 0.91861 0.90661 0.94900 0.91105 0.90433 0.94197 0.78418 0.91499 0.90790 0.84441 0.85044 0.84899 0.84125 0.90107 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.84 10.71 55.43 0.59 -23.25 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.19 8.20 -34.44 -0.28 -14.47 16 8 H 0.06 1.63 7.56 -52.49 -0.40 1.23 16 9 C 0.23 5.73 0.84 -89.95 -0.08 5.65 16 10 O -0.59 -14.94 13.06 -35.23 -0.46 -15.40 16 11 C -0.13 -3.05 5.48 -24.60 -0.13 -3.19 16 12 C 0.05 1.01 5.06 -2.30 -0.01 1.00 16 13 N -0.52 -9.81 5.16 -231.25 -1.19 -11.01 16 14 C 0.03 0.37 4.39 -3.82 -0.02 0.36 16 15 C 0.12 1.53 3.44 -26.73 -0.09 1.44 16 16 H 0.12 1.66 8.14 -51.92 -0.42 1.23 16 17 O -0.54 -7.80 10.78 -40.09 -0.43 -8.24 16 18 C 0.03 0.29 4.38 37.15 0.16 0.45 16 19 O -0.29 -3.83 9.97 -24.48 -0.24 -4.07 16 20 C 0.10 1.17 6.69 -39.18 -0.26 0.91 16 21 C -0.19 -1.64 9.04 -39.45 -0.36 -2.00 16 22 C -0.09 -0.64 10.04 -39.59 -0.40 -1.03 16 23 C -0.13 -0.92 10.04 -39.56 -0.40 -1.32 16 24 C -0.12 -0.98 10.02 -39.54 -0.40 -1.38 16 25 C 0.07 0.76 7.31 -39.30 -0.29 0.47 16 26 F -0.13 -1.76 17.11 2.25 0.04 -1.72 16 27 C 0.06 1.22 6.21 -2.84 -0.02 1.20 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.38 9.72 7.51 45.56 0.34 10.06 16 30 H 0.06 1.55 8.04 -51.93 -0.42 1.13 16 31 H 0.07 1.85 7.52 -51.93 -0.39 1.46 16 32 H 0.03 0.62 6.97 -51.93 -0.36 0.26 16 33 H 0.07 1.38 7.60 -51.93 -0.39 0.98 16 34 H 0.08 1.01 8.03 -51.93 -0.42 0.59 16 35 H 0.04 0.59 7.85 -51.93 -0.41 0.19 16 36 H 0.37 4.23 8.70 45.56 0.40 4.62 16 37 H 0.07 0.60 7.65 -51.93 -0.40 0.20 16 38 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 39 H 0.14 0.99 6.30 -52.48 -0.33 0.66 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 42 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.08 1.73 7.64 -51.93 -0.40 1.33 16 44 H 0.04 0.93 7.47 -51.93 -0.39 0.54 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -30.04 361.25 -8.72 -38.76 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -4.78 Total: 13.97 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.66 Total: -10.15 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: -0.60 Total: -34.26 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.14 Total: -27.71 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.04 -8.72 -38.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.583 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds