Wall clock time and date at job start Fri Apr 10 2020 18:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48496 * 109.46952 * 264.99357 * 3 2 1 5 5 H 1.48497 * 109.47013 * 24.99239 * 3 2 1 6 6 H 1.48501 * 109.46962 * 144.99145 * 3 2 1 7 7 C 1.37878 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00024 * 185.71588 * 7 2 1 9 9 C 1.50701 * 120.00007 * 5.71379 * 7 2 1 10 10 O 1.42908 * 110.62596 * 59.41159 * 9 7 2 11 11 C 1.55135 * 110.70615 * 296.11625 * 9 7 2 12 12 C 1.54908 * 101.65056 * 205.96431 * 11 9 7 13 13 N 1.47844 * 104.80027 * 37.06938 * 12 11 9 14 14 C 1.46897 * 111.00436 * 213.63926 * 13 12 11 15 15 C 1.53002 * 109.46962 * 290.84173 * 14 13 12 16 16 H 1.09007 * 109.46873 * 305.00184 * 15 14 13 17 17 O 1.42903 * 109.47118 * 64.99708 * 15 14 13 18 18 C 1.52992 * 109.47237 * 184.99942 * 15 14 13 19 19 O 1.42901 * 109.47174 * 175.00145 * 18 15 14 20 20 C 1.35963 * 116.99867 * 180.02562 * 19 18 15 21 21 C 1.38651 * 120.06542 * 359.71620 * 20 19 18 22 22 C 1.38177 * 119.97367 * 179.75280 * 21 20 19 23 23 C 1.38271 * 120.09127 * 0.52725 * 22 21 20 24 24 C 1.38250 * 120.12341 * 359.74971 * 23 22 21 25 25 C 1.38329 * 120.03422 * 359.97327 * 24 23 22 26 26 F 1.35106 * 120.05337 * 180.02562 * 25 24 23 27 27 C 1.47443 * 108.56294 * 335.90542 * 13 12 11 28 28 H 0.97002 * 119.99993 * 0.02562 * 1 2 3 29 29 H 0.96699 * 113.99794 * 297.49063 * 10 9 7 30 30 H 1.09002 * 110.99027 * 324.05378 * 11 9 7 31 31 H 1.08995 * 110.99302 * 87.83613 * 11 9 7 32 32 H 1.09002 * 110.37739 * 278.23627 * 12 11 9 33 33 H 1.09006 * 110.37484 * 155.90123 * 12 11 9 34 34 H 1.08999 * 109.47430 * 170.84058 * 14 13 12 35 35 H 1.09001 * 109.46966 * 50.83582 * 14 13 12 36 36 H 0.96699 * 114.00313 * 60.00115 * 17 15 14 37 37 H 1.09003 * 109.47351 * 294.99573 * 18 15 14 38 38 H 1.09003 * 109.47250 * 54.99952 * 18 15 14 39 39 H 1.08005 * 120.01462 * 0.02590 * 21 20 19 40 40 H 1.08002 * 119.95786 * 180.27720 * 22 21 20 41 41 H 1.07998 * 119.93225 * 179.76999 * 23 22 21 42 42 H 1.08004 * 119.98131 * 180.02562 * 24 23 22 43 43 H 1.09004 * 109.89062 * 120.39143 * 27 13 12 44 44 H 1.08998 * 109.88943 * 241.58634 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3977 2.6809 0.5915 6 1 3.4898 1.4731 0.8032 7 6 2.0046 -1.1941 0.0005 8 1 3.0805 -1.1964 0.0937 9 6 1.2567 -2.4960 -0.1288 10 8 0.5182 -2.5330 -1.3517 11 6 0.3203 -2.7140 1.0887 12 6 0.2090 -4.2586 1.1252 13 7 1.5534 -4.7432 0.7463 14 6 1.4662 -5.9967 -0.0145 15 6 0.9950 -7.1220 0.9089 16 1 1.6561 -7.1833 1.7735 17 8 -0.3382 -6.8520 1.3469 18 6 1.0234 -8.4501 0.1500 19 8 0.6956 -9.5163 1.0433 20 6 0.6767 -10.7727 0.5241 21 6 0.9615 -10.9742 -0.8178 22 6 0.9467 -12.2525 -1.3423 23 6 0.6374 -13.3303 -0.5332 24 6 0.3472 -13.1333 0.8040 25 6 0.3661 -11.8564 1.3358 26 9 0.0830 -11.6635 2.6427 27 6 2.2263 -3.6933 -0.0405 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1653 -1.8522 -1.4191 30 1 0.7745 -2.3335 2.0036 31 1 -0.6539 -2.2556 0.9190 32 1 -0.5348 -4.6026 0.4065 33 1 -0.0473 -4.5970 2.1291 34 1 2.4474 -6.2454 -0.4189 35 1 0.7559 -5.8766 -0.8325 36 1 -0.9820 -6.7839 0.6286 37 1 0.2968 -8.4202 -0.6620 38 1 2.0201 -8.6131 -0.2601 39 1 1.1993 -10.1328 -1.4519 40 1 1.1730 -12.4096 -2.3866 41 1 0.6230 -14.3279 -0.9467 42 1 0.1063 -13.9768 1.4340 43 1 3.1468 -3.3890 0.4577 44 1 2.4487 -4.0648 -1.0408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:54 Heat of formation + Delta-G solvation = -171.310198 kcal Electronic energy + Delta-G solvation = -27491.825838 eV Core-core repulsion = 23323.105142 eV Total energy + Delta-G solvation = -4168.720696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.82754 -41.15909 -40.33176 -38.83940 -37.77964 -36.05945 -34.17957 -32.75385 -31.66536 -31.19541 -29.93019 -29.86742 -27.16670 -25.67653 -23.86880 -23.34785 -22.55056 -21.85355 -21.28072 -19.44229 -19.09231 -18.37057 -17.78732 -17.70897 -17.19438 -16.89960 -16.82766 -16.40173 -16.14433 -15.91218 -15.78470 -15.57780 -15.35610 -15.08726 -14.65248 -14.28540 -13.87934 -13.80469 -13.75955 -13.34193 -13.26353 -13.13412 -12.99485 -12.72701 -12.69131 -12.39712 -12.32203 -12.27678 -12.08121 -12.03118 -11.87749 -11.69719 -11.16123 -10.89314 -10.64600 -10.06972 -9.94529 -9.23162 -9.21602 -8.21143 -6.35299 0.12851 0.27160 1.40322 1.42105 1.50799 1.90739 2.38658 2.61196 3.01812 3.08612 3.27009 3.41598 3.67552 3.83311 3.87792 3.91620 3.96313 4.05163 4.20109 4.21964 4.32661 4.36800 4.39477 4.42556 4.55928 4.56987 4.63308 4.68668 4.94912 4.98311 5.02384 5.10299 5.15353 5.26397 5.34880 5.43260 5.49550 5.58363 5.70813 5.81231 5.97185 6.19903 6.22663 6.30602 6.68594 6.75867 7.32882 7.37487 8.83489 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.036547 B = 0.002169 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.944278 B =12905.191025 C =13221.054629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.028 3.972 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.055 0.945 9 C 0.220 3.780 10 O -0.594 6.594 11 C -0.126 4.126 12 C 0.068 3.932 13 N -0.529 5.529 14 C 0.028 3.972 15 C 0.124 3.876 16 H 0.099 0.901 17 O -0.564 6.564 18 C 0.034 3.966 19 O -0.324 6.324 20 C 0.076 3.924 21 C -0.189 4.189 22 C -0.084 4.084 23 C -0.127 4.127 24 C -0.117 4.117 25 C 0.027 3.973 26 F -0.154 7.154 27 C 0.066 3.934 28 H 0.267 0.733 29 H 0.373 0.627 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.381 0.619 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.075 0.925 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -25.276 -4.463 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.172 4.172 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.596 4.596 8 H 0.073 0.927 9 C 0.180 3.820 10 O -0.402 6.402 11 C -0.165 4.165 12 C -0.059 4.059 13 N -0.253 5.253 14 C -0.101 4.101 15 C 0.065 3.935 16 H 0.117 0.883 17 O -0.370 6.370 18 C -0.042 4.042 19 O -0.238 6.238 20 C 0.030 3.970 21 C -0.207 4.207 22 C -0.102 4.102 23 C -0.145 4.145 24 C -0.136 4.136 25 C 0.008 3.992 26 F -0.133 7.133 27 C -0.062 4.062 28 H 0.077 0.923 29 H 0.222 0.778 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.062 0.938 36 H 0.229 0.771 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.184 0.816 42 H 0.176 0.824 43 H 0.093 0.907 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.386 -25.712 -3.297 25.959 hybrid contribution -0.785 2.133 -0.750 2.393 sum 0.601 -23.579 -4.047 23.931 Atomic orbital electron populations 1.69844 1.06774 1.28001 1.50454 1.25696 0.95840 1.02276 0.93433 0.85574 0.78650 0.79094 0.78299 1.20099 1.20800 1.19651 1.21856 0.93934 0.92366 1.51463 0.92700 1.19936 0.88278 0.92467 0.81283 1.86085 1.53800 1.58599 1.41671 1.23020 1.00161 0.94146 0.99210 1.22904 0.89023 0.93937 1.00041 1.63564 1.18379 1.03316 1.40062 1.22853 1.02569 0.90209 0.94491 1.21791 0.84717 0.89317 0.97722 0.88329 1.86673 1.18092 1.93954 1.38309 1.23656 1.02795 0.85117 0.92590 1.86168 1.85137 1.13078 1.39415 1.19400 0.99728 0.84281 0.93586 1.21498 1.05997 1.00770 0.92454 1.21494 0.96077 0.90884 1.01767 1.21378 0.99960 1.01232 0.91922 1.21352 1.00449 0.94028 0.97776 1.17578 1.09564 0.93800 0.78277 1.91452 1.91845 1.96105 1.33880 1.22694 0.97173 0.90698 0.95628 0.92335 0.77817 0.93937 0.92588 0.94019 0.90870 0.88366 0.93765 0.77064 0.89685 0.88769 0.82853 0.81880 0.81575 0.82410 0.90684 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.02 10.71 21.45 0.23 -48.79 16 2 C 0.03 1.49 5.28 84.65 0.45 1.93 16 3 Si 0.96 42.49 29.54 68.60 2.03 44.51 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.56 -30.08 8.20 25.60 0.21 -29.87 16 8 H 0.05 2.95 7.56 -2.91 -0.02 2.92 16 9 C 0.22 10.85 0.84 -10.36 -0.01 10.84 16 10 O -0.59 -30.06 13.06 -148.98 -1.95 -32.01 16 11 C -0.13 -5.98 5.48 31.98 0.18 -5.81 16 12 C 0.07 2.66 5.06 86.77 0.44 3.10 16 13 N -0.53 -19.35 5.16 -885.53 -4.57 -23.92 16 14 C 0.03 0.75 4.39 86.30 0.38 1.13 16 15 C 0.12 3.11 3.44 30.59 0.11 3.21 16 16 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 17 O -0.56 -15.83 10.78 -144.34 -1.56 -17.39 16 18 C 0.03 0.66 4.38 71.98 0.31 0.97 16 19 O -0.32 -8.36 9.97 -88.49 -0.88 -9.25 16 20 C 0.08 1.70 6.69 22.53 0.15 1.85 16 21 C -0.19 -2.87 9.04 22.35 0.20 -2.67 16 22 C -0.08 -0.89 10.04 22.26 0.22 -0.67 16 23 C -0.13 -1.31 10.04 22.28 0.22 -1.08 16 24 C -0.12 -1.78 10.02 22.29 0.22 -1.56 16 25 C 0.03 0.63 7.31 22.45 0.16 0.79 16 26 F -0.15 -4.33 17.11 44.97 0.77 -3.56 16 27 C 0.07 2.76 6.21 86.65 0.54 3.30 16 28 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 29 H 0.37 19.45 7.51 -74.06 -0.56 18.89 16 30 H 0.04 2.13 8.04 -2.39 -0.02 2.11 16 31 H 0.06 2.82 7.52 -2.39 -0.02 2.80 16 32 H 0.04 1.55 6.97 -2.39 -0.02 1.53 16 33 H 0.07 2.83 7.60 -2.38 -0.02 2.81 16 34 H 0.10 2.30 8.03 -2.39 -0.02 2.28 16 35 H 0.04 1.20 7.85 -2.39 -0.02 1.19 16 36 H 0.38 8.33 8.70 -74.06 -0.64 7.68 16 37 H 0.09 1.32 7.65 -2.39 -0.02 1.30 16 38 H 0.09 1.41 7.67 -2.39 -0.02 1.40 16 39 H 0.15 1.72 6.30 -2.91 -0.02 1.71 16 40 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 41 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 42 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.07 3.21 7.64 -2.39 -0.02 3.19 16 44 H 0.05 2.08 7.47 -2.39 -0.02 2.06 16 Total: -1.00 -66.11 361.25 -2.31 -68.42 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.16 Total: 36.52 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 3.79 Total: -14.54 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -4.34 Total: -72.71 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -4.38 Total: -58.64 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.77 Total: -3.56 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -66.11 -2.31 -68.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.890 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds