Wall clock time and date at job start Fri Apr 10 2020 18:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45202 * 109.46957 * 2 1 4 4 C 1.34750 * 116.99592 * 180.02562 * 3 2 1 5 5 O 1.21527 * 120.00620 * 359.97438 * 4 3 2 6 6 C 1.47291 * 120.00031 * 180.02562 * 4 3 2 7 7 C 1.38124 * 126.42435 * 270.01964 * 6 4 3 8 8 C 1.50700 * 126.29499 * 0.02562 * 7 6 4 9 9 N 1.34227 * 107.40835 * 179.73807 * 7 6 4 10 10 H 0.96995 * 125.74322 * 180.22779 * 9 7 6 11 11 N 1.39932 * 108.51118 * 0.22994 * 9 7 6 12 12 C 1.30428 * 108.92063 * 359.97438 * 11 9 7 13 13 C 1.50697 * 125.99543 * 180.02562 * 12 11 9 14 14 N 1.46506 * 109.47175 * 89.97452 * 13 12 11 15 15 C 1.36937 * 119.99739 * 275.83695 * 14 13 12 16 16 H 1.07994 * 120.00077 * 8.38551 * 15 14 13 17 17 C 1.38813 * 119.99551 * 188.38906 * 15 14 13 18 18 N 1.31621 * 120.00262 * 27.24953 * 17 15 14 19 19 Si 1.86806 * 119.99876 * 207.24564 * 17 15 14 20 20 H 1.48504 * 109.47076 * 89.99848 * 19 17 15 21 21 H 1.48493 * 109.47200 * 210.00182 * 19 17 15 22 22 H 1.48504 * 109.47136 * 330.00247 * 19 17 15 23 23 C 1.46497 * 120.00142 * 95.83586 * 14 13 12 24 24 C 1.50705 * 109.47123 * 89.99699 * 23 14 13 25 25 O 1.20826 * 119.99943 * 0.02562 * 24 23 14 26 26 O 1.34228 * 119.99704 * 180.02562 * 24 23 14 27 27 C 1.45197 * 116.99823 * 180.02562 * 26 24 23 28 28 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46979 * 300.00568 * 1 2 3 30 30 H 1.09003 * 109.46659 * 59.99991 * 1 2 3 31 31 H 1.09004 * 109.47035 * 239.99863 * 2 1 3 32 32 H 1.08995 * 109.46978 * 120.00061 * 2 1 3 33 33 H 1.08999 * 109.47253 * 269.71117 * 8 7 6 34 34 H 1.09005 * 109.46861 * 149.71095 * 8 7 6 35 35 H 1.09002 * 109.47624 * 29.71436 * 8 7 6 36 36 H 1.08993 * 109.47305 * 209.97574 * 13 12 11 37 37 H 1.08998 * 109.46912 * 329.97403 * 13 12 11 38 38 H 0.97005 * 119.99817 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47251 * 210.00180 * 23 14 13 40 40 H 1.09002 * 109.46964 * 330.00448 * 23 14 13 41 41 H 1.09001 * 109.47254 * 59.99468 * 27 26 24 42 42 H 1.09000 * 109.47696 * 179.97438 * 27 26 24 43 43 H 1.09007 * 109.47188 * 299.99976 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0903 0.5818 -0.0005 6 6 3.9130 2.9065 0.0000 7 6 4.2256 3.6652 -1.1111 8 6 4.0528 3.2528 -2.5502 9 7 4.7056 4.8397 -0.6733 10 1 5.0038 5.5739 -1.2327 11 7 4.7035 4.8267 0.7260 12 6 4.2364 3.6806 1.1376 13 6 4.0664 3.2579 2.5740 14 7 2.7327 3.6434 3.0420 15 6 2.5111 4.9114 3.5091 16 1 3.2774 5.6657 3.4082 17 6 1.3015 5.2272 4.1124 18 7 0.6033 4.2899 4.7176 19 14 0.6646 6.9827 4.0654 20 1 -0.1737 7.1729 2.8545 21 1 -0.1507 7.2461 5.2783 22 1 1.8120 7.9247 4.0261 23 6 1.6362 2.6724 3.0102 24 6 1.5982 1.9148 4.3124 25 8 2.4041 2.1609 5.1783 26 8 0.6691 0.9664 4.5101 27 6 0.6918 0.2777 5.7882 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.9625 2.7647 -2.9001 34 1 3.8562 4.1348 -3.1598 35 1 3.2148 2.5606 -2.6318 36 1 4.1797 2.1765 2.6503 37 1 4.8225 3.7466 3.1884 38 1 -0.2421 4.5106 5.1389 39 1 0.6911 3.1962 2.8669 40 1 1.7930 1.9741 2.1880 41 1 0.5495 0.9995 6.5925 42 1 -0.1093 -0.4608 5.8174 43 1 1.6522 -0.2223 5.9145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595342416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:05 Heat of formation + Delta-G solvation = -69.227969 kcal Electronic energy + Delta-G solvation = -29569.341043 eV Core-core repulsion = 25424.966926 eV Total energy + Delta-G solvation = -4144.374117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.19261 -39.67308 -38.89055 -36.22159 -36.07911 -34.59119 -32.84570 -31.94454 -31.32743 -30.58318 -28.33840 -27.38080 -26.35626 -25.85082 -23.87276 -22.32590 -22.12814 -20.13997 -19.69534 -19.24649 -17.73974 -17.03211 -16.74386 -16.34018 -16.07698 -15.64140 -15.44685 -15.02727 -14.91415 -14.56087 -14.03291 -13.65999 -13.56286 -13.39661 -13.30412 -12.96096 -12.72831 -12.64601 -12.43855 -12.14711 -12.01388 -11.69539 -11.48738 -11.42921 -11.09053 -11.03893 -10.86493 -10.61913 -10.50191 -10.28429 -10.10427 -10.04778 -9.90088 -9.57644 -9.16918 -9.04514 -8.47960 -8.42339 -7.17610 -5.91717 -3.16828 1.86210 2.38838 2.66805 2.91620 3.32646 3.40198 3.47399 3.49941 3.90803 4.09243 4.52366 4.58805 4.90211 4.92513 5.07959 5.13706 5.26998 5.29565 5.37036 5.40566 5.44735 5.60779 5.69846 5.82971 5.83741 5.89815 5.92681 5.94240 6.13605 6.17065 6.26050 6.36750 6.48446 6.65640 6.75292 6.79557 7.08561 7.37828 7.73181 7.83904 7.97496 8.04232 8.14206 9.03518 9.42087 9.71180 10.11223 11.20167 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.006417 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.627851 B = 4362.157044 C = 6089.009603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.343 6.343 4 C 0.558 3.442 5 O -0.508 6.508 6 C -0.266 4.266 7 C 0.127 3.873 8 C -0.096 4.096 9 N -0.466 5.466 10 H 0.438 0.562 11 N -0.275 5.275 12 C 0.131 3.869 13 C 0.213 3.787 14 N -0.554 5.554 15 C -0.250 4.250 16 H 0.086 0.914 17 C 0.004 3.996 18 N -0.898 5.898 19 Si 0.905 3.095 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.279 1.279 23 C 0.189 3.811 24 C 0.466 3.534 25 O -0.505 6.505 26 O -0.382 6.382 27 C 0.043 3.957 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.257 0.743 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 -6.959 -13.658 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.259 6.259 4 C 0.400 3.600 5 O -0.396 6.396 6 C -0.279 4.279 7 C -0.006 4.006 8 C -0.155 4.155 9 N -0.171 5.171 10 H 0.282 0.718 11 N -0.096 5.096 12 C -0.041 4.041 13 C 0.083 3.917 14 N -0.272 5.272 15 C -0.378 4.378 16 H 0.104 0.896 17 C -0.194 4.194 18 N -0.543 5.543 19 Si 0.735 3.265 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.204 1.204 23 C 0.060 3.940 24 C 0.306 3.694 25 O -0.390 6.390 26 O -0.300 6.300 27 C -0.052 4.052 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.885 -6.040 -12.865 14.336 hybrid contribution -0.624 0.417 -0.102 0.757 sum 1.261 -5.623 -12.966 14.189 Atomic orbital electron populations 1.21811 0.92507 1.02705 1.04016 1.23036 0.95617 0.80446 1.02290 1.86747 1.23952 1.31816 1.83402 1.20160 0.80319 0.88481 0.71045 1.90810 1.60721 1.42550 1.45490 1.18964 1.19065 0.96346 0.93541 1.21140 0.96793 0.87027 0.95592 1.20532 1.03854 1.02678 0.88392 1.46099 1.51201 1.13207 1.06617 0.71841 1.77273 1.25299 1.20363 0.86657 1.23896 0.93074 0.89112 0.97973 1.19262 0.89407 0.97838 0.85235 1.43916 1.03647 1.09979 1.69656 1.19320 1.00224 0.85018 1.33228 0.89586 1.24702 0.98837 0.97823 0.98014 1.69900 1.15999 1.32697 1.35738 0.86225 0.78793 0.84570 0.76951 1.21494 1.22030 1.20438 1.20450 0.95109 0.90119 0.88326 1.25475 0.76576 0.75093 0.92297 1.90465 1.40770 1.62867 1.44895 1.86529 1.56323 1.50142 1.36987 1.22848 1.00776 0.95924 0.85697 0.90530 0.90546 0.91773 0.91662 0.91089 0.89659 0.90354 0.89671 0.91812 0.90750 0.93241 0.87006 0.92534 0.92839 0.90199 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.78 6.20 37.16 0.23 1.01 16 3 O -0.34 -5.58 8.57 -40.63 -0.35 -5.93 16 4 C 0.56 9.78 6.76 34.41 0.23 10.02 16 5 O -0.51 -9.57 16.90 -19.29 -0.33 -9.89 16 6 C -0.27 -4.69 6.00 -105.08 -0.63 -5.32 16 7 C 0.13 1.78 7.30 -81.59 -0.60 1.18 16 8 C -0.10 -0.87 10.25 36.01 0.37 -0.50 16 9 N -0.47 -6.55 7.28 33.87 0.25 -6.31 16 10 H 0.44 4.30 8.96 -182.73 -1.64 2.67 16 11 N -0.27 -5.19 12.63 33.90 0.43 -4.76 16 12 C 0.13 2.60 6.81 -82.01 -0.56 2.04 16 13 C 0.21 4.65 6.07 -5.19 -0.03 4.62 16 14 N -0.55 -13.75 2.02 -175.99 -0.35 -14.10 16 15 C -0.25 -6.79 9.66 -15.06 -0.15 -6.93 16 16 H 0.09 2.36 7.96 -52.49 -0.42 1.94 16 17 C 0.00 0.11 4.83 -17.43 -0.08 0.02 16 18 N -0.90 -25.46 9.07 55.49 0.50 -24.95 16 19 Si 0.90 21.93 29.63 -169.99 -5.04 16.90 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.19 4.52 5.52 -5.19 -0.03 4.49 16 24 C 0.47 11.59 6.03 36.01 0.22 11.81 16 25 O -0.51 -14.11 15.86 -18.75 -0.30 -14.41 16 26 O -0.38 -8.37 10.57 -39.25 -0.41 -8.78 16 27 C 0.04 0.77 10.56 101.05 1.07 1.83 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 36 H 0.06 1.35 7.90 -51.93 -0.41 0.94 16 37 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.11 2.88 6.37 -51.93 -0.33 2.55 16 40 H 0.06 1.22 5.90 -51.93 -0.31 0.91 16 41 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.04 0.78 8.13 -51.92 -0.42 0.35 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -35.25 372.96 -6.85 -42.11 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.30 Total: 1.50 kcal Atomic # 6 Polarization: 22.59 SS G_CDS: 0.42 Total: 23.01 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.82 Total: -50.12 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.39 Total: -39.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.04 Total: 16.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.25 -6.85 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595342416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.121 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds