Wall clock time and date at job start Fri Apr 10 2020 18:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45202 * 109.46957 * 2 1 4 4 C 1.34750 * 116.99592 * 180.02562 * 3 2 1 5 5 O 1.21527 * 120.00620 * 359.97438 * 4 3 2 6 6 C 1.47291 * 120.00031 * 180.02562 * 4 3 2 7 7 C 1.38124 * 126.42435 * 270.01964 * 6 4 3 8 8 C 1.50700 * 126.29499 * 0.02562 * 7 6 4 9 9 N 1.34227 * 107.40835 * 179.73807 * 7 6 4 10 10 H 0.96995 * 125.74322 * 180.22779 * 9 7 6 11 11 N 1.39932 * 108.51118 * 0.22994 * 9 7 6 12 12 C 1.30428 * 108.92063 * 359.97438 * 11 9 7 13 13 C 1.50697 * 125.99543 * 180.02562 * 12 11 9 14 14 N 1.46506 * 109.47175 * 89.97452 * 13 12 11 15 15 C 1.36937 * 119.99739 * 275.83695 * 14 13 12 16 16 H 1.07994 * 120.00077 * 8.38551 * 15 14 13 17 17 C 1.38813 * 119.99551 * 188.38906 * 15 14 13 18 18 N 1.31621 * 120.00262 * 27.24953 * 17 15 14 19 19 Si 1.86806 * 119.99876 * 207.24564 * 17 15 14 20 20 H 1.48504 * 109.47076 * 89.99848 * 19 17 15 21 21 H 1.48493 * 109.47200 * 210.00182 * 19 17 15 22 22 H 1.48504 * 109.47136 * 330.00247 * 19 17 15 23 23 C 1.46497 * 120.00142 * 95.83586 * 14 13 12 24 24 C 1.50705 * 109.47123 * 89.99699 * 23 14 13 25 25 O 1.20826 * 119.99943 * 0.02562 * 24 23 14 26 26 O 1.34228 * 119.99704 * 180.02562 * 24 23 14 27 27 C 1.45197 * 116.99823 * 180.02562 * 26 24 23 28 28 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46979 * 300.00568 * 1 2 3 30 30 H 1.09003 * 109.46659 * 59.99991 * 1 2 3 31 31 H 1.09004 * 109.47035 * 239.99863 * 2 1 3 32 32 H 1.08995 * 109.46978 * 120.00061 * 2 1 3 33 33 H 1.08999 * 109.47253 * 269.71117 * 8 7 6 34 34 H 1.09005 * 109.46861 * 149.71095 * 8 7 6 35 35 H 1.09002 * 109.47624 * 29.71436 * 8 7 6 36 36 H 1.08993 * 109.47305 * 209.97574 * 13 12 11 37 37 H 1.08998 * 109.46912 * 329.97403 * 13 12 11 38 38 H 0.97005 * 119.99817 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47251 * 210.00180 * 23 14 13 40 40 H 1.09002 * 109.46964 * 330.00448 * 23 14 13 41 41 H 1.09001 * 109.47254 * 59.99468 * 27 26 24 42 42 H 1.09000 * 109.47696 * 179.97438 * 27 26 24 43 43 H 1.09007 * 109.47188 * 299.99976 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0903 0.5818 -0.0005 6 6 3.9130 2.9065 0.0000 7 6 4.2256 3.6652 -1.1111 8 6 4.0528 3.2528 -2.5502 9 7 4.7056 4.8397 -0.6733 10 1 5.0038 5.5739 -1.2327 11 7 4.7035 4.8267 0.7260 12 6 4.2364 3.6806 1.1376 13 6 4.0664 3.2579 2.5740 14 7 2.7327 3.6434 3.0420 15 6 2.5111 4.9114 3.5091 16 1 3.2774 5.6657 3.4082 17 6 1.3015 5.2272 4.1124 18 7 0.6033 4.2899 4.7176 19 14 0.6646 6.9827 4.0654 20 1 -0.1737 7.1729 2.8545 21 1 -0.1507 7.2461 5.2783 22 1 1.8120 7.9247 4.0261 23 6 1.6362 2.6724 3.0102 24 6 1.5982 1.9148 4.3124 25 8 2.4041 2.1609 5.1783 26 8 0.6691 0.9664 4.5101 27 6 0.6918 0.2777 5.7882 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.9625 2.7647 -2.9001 34 1 3.8562 4.1348 -3.1598 35 1 3.2148 2.5606 -2.6318 36 1 4.1797 2.1765 2.6503 37 1 4.8225 3.7466 3.1884 38 1 -0.2421 4.5106 5.1389 39 1 0.6911 3.1962 2.8669 40 1 1.7930 1.9741 2.1880 41 1 0.5495 0.9995 6.5925 42 1 -0.1093 -0.4608 5.8174 43 1 1.6522 -0.2223 5.9145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595342416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:04 Heat of formation + Delta-G solvation = -91.771401 kcal Electronic energy + Delta-G solvation = -29570.318599 eV Core-core repulsion = 25424.966926 eV Total energy + Delta-G solvation = -4145.351673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.48454 -40.95935 -40.78957 -37.91842 -37.49795 -36.51330 -34.35614 -33.20693 -32.71540 -31.95408 -30.07905 -28.51629 -28.00997 -27.64351 -25.00030 -24.20422 -23.21587 -21.84841 -21.04582 -20.82804 -19.13140 -18.61288 -18.25814 -18.15454 -17.47961 -17.22681 -16.86404 -16.80096 -16.59018 -16.01210 -15.52972 -15.34383 -15.05063 -14.91165 -14.43404 -14.16232 -13.98108 -13.82611 -13.60042 -13.53075 -13.44934 -13.13755 -12.93582 -12.80210 -12.71490 -12.69337 -12.42214 -12.33797 -12.07356 -11.99540 -11.94414 -11.43533 -11.40090 -11.38019 -11.09937 -10.54996 -10.42489 -9.68435 -9.16347 -7.99393 -5.25868 0.70479 1.05633 1.27288 1.46592 1.48619 1.57556 1.71814 1.98090 2.12307 2.33158 2.55201 3.19027 3.51243 3.58318 3.65374 3.98922 4.11725 4.15032 4.19089 4.30724 4.38535 4.44272 4.46608 4.50706 4.52702 4.64371 4.66945 4.77002 4.90395 4.95451 5.00457 5.01531 5.04442 5.10360 5.23372 5.34846 5.51637 5.64220 5.91766 6.12270 6.35216 6.64610 6.75603 6.98053 7.46657 7.71207 8.08780 9.10795 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.006417 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.627851 B = 4362.157044 C = 6089.009603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.352 6.352 4 C 0.562 3.438 5 O -0.528 6.528 6 C -0.303 4.303 7 C 0.156 3.844 8 C -0.095 4.095 9 N -0.447 5.447 10 H 0.458 0.542 11 N -0.306 5.306 12 C 0.113 3.887 13 C 0.217 3.783 14 N -0.565 5.565 15 C -0.255 4.255 16 H 0.077 0.923 17 C -0.042 4.042 18 N -0.921 5.921 19 Si 0.965 3.035 20 H -0.282 1.282 21 H -0.298 1.298 22 H -0.277 1.277 23 C 0.198 3.802 24 C 0.468 3.532 25 O -0.543 6.543 26 O -0.382 6.382 27 C 0.038 3.962 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.252 0.748 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.035 0.965 42 H 0.129 0.871 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -7.208 -16.255 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.268 6.268 4 C 0.406 3.594 5 O -0.418 6.418 6 C -0.316 4.316 7 C 0.021 3.979 8 C -0.153 4.153 9 N -0.154 5.154 10 H 0.306 0.694 11 N -0.129 5.129 12 C -0.057 4.057 13 C 0.088 3.912 14 N -0.285 5.285 15 C -0.384 4.384 16 H 0.095 0.905 17 C -0.237 4.237 18 N -0.567 5.567 19 Si 0.794 3.206 20 H -0.209 1.209 21 H -0.225 1.225 22 H -0.202 1.202 23 C 0.069 3.931 24 C 0.310 3.690 25 O -0.431 6.431 26 O -0.299 6.299 27 C -0.056 4.056 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.147 0.853 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.332 -6.285 -15.493 16.772 hybrid contribution -0.419 0.411 0.649 0.875 sum 0.913 -5.874 -14.844 15.990 Atomic orbital electron populations 1.21834 0.90663 1.04403 1.03520 1.23356 0.97044 0.79053 1.02745 1.86739 1.23293 1.33818 1.82985 1.20156 0.80561 0.88265 0.70449 1.90785 1.61206 1.43163 1.46631 1.19149 1.21319 0.97117 0.94043 1.21830 0.93392 0.85572 0.97089 1.20784 1.04975 1.04426 0.85124 1.46028 1.50167 1.14073 1.05172 0.69397 1.77131 1.26153 1.20169 0.89404 1.23303 0.94837 0.90323 0.97205 1.19130 0.87834 0.97496 0.86699 1.43995 1.04743 1.09659 1.70057 1.19418 1.00191 0.85965 1.32776 0.90542 1.25353 0.99104 1.01059 0.98161 1.70024 1.15968 1.34058 1.36688 0.85289 0.77991 0.80696 0.76593 1.20879 1.22549 1.20184 1.20323 0.94057 0.90027 0.88720 1.25587 0.76248 0.75130 0.92083 1.90437 1.42320 1.64264 1.46090 1.86483 1.55013 1.49481 1.38930 1.23179 1.03123 0.95992 0.83294 0.87722 0.92485 0.90746 0.89748 0.92135 0.87518 0.86893 0.89458 0.92095 0.92120 0.93839 0.88935 0.90550 0.94615 0.85325 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 10.29 71.99 0.74 -2.15 16 2 C 0.05 1.27 6.20 71.99 0.45 1.72 16 3 O -0.35 -11.24 8.57 -56.60 -0.49 -11.72 16 4 C 0.56 19.47 6.76 70.20 0.47 19.94 16 5 O -0.53 -19.73 16.90 19.75 0.33 -19.40 16 6 C -0.30 -10.51 6.00 -20.16 -0.12 -10.63 16 7 C 0.16 3.98 7.30 42.17 0.31 4.29 16 8 C -0.10 -1.34 10.25 71.24 0.73 -0.61 16 9 N -0.45 -11.63 7.28 -46.76 -0.34 -11.97 16 10 H 0.46 7.66 8.96 -213.43 -1.91 5.75 16 11 N -0.31 -11.50 12.63 -46.65 -0.59 -12.09 16 12 C 0.11 4.56 6.81 43.53 0.30 4.86 16 13 C 0.22 9.89 6.07 85.63 0.52 10.41 16 14 N -0.57 -28.97 2.02 -710.69 -1.43 -30.40 16 15 C -0.25 -14.20 9.66 84.03 0.81 -13.39 16 16 H 0.08 4.32 7.96 -2.91 -0.02 4.30 16 17 C -0.04 -2.32 4.83 84.86 0.41 -1.91 16 18 N -0.92 -53.35 9.07 21.65 0.20 -53.16 16 19 Si 0.97 45.79 29.63 68.60 2.03 47.82 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 C 0.20 9.71 5.52 85.64 0.47 10.18 16 24 C 0.47 23.82 6.03 71.24 0.43 24.25 16 25 O -0.54 -31.26 15.86 21.96 0.35 -30.91 16 26 O -0.38 -16.74 10.57 -51.40 -0.54 -17.28 16 27 C 0.04 1.34 10.56 113.37 1.20 2.54 16 28 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.09 1.29 7.96 -2.39 -0.02 1.27 16 36 H 0.06 2.72 7.90 -2.39 -0.02 2.70 16 37 H 0.06 2.84 8.09 -2.39 -0.02 2.82 16 38 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 39 H 0.09 4.91 6.37 -2.39 -0.02 4.90 16 40 H 0.08 3.37 5.90 -2.39 -0.01 3.36 16 41 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 42 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.05 1.73 8.13 -2.38 -0.02 1.71 16 Total: -1.00 -78.75 372.96 5.37 -73.38 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.87 Total: 16.24 kcal Atomic # 6 Polarization: 42.78 SS G_CDS: 6.72 Total: 49.49 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -2.17 Total: -107.61 kcal Atomic # 8 Polarization: -78.97 SS G_CDS: -0.35 Total: -79.32 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -78.75 5.37 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595342416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.392 kcal (2) G-P(sol) polarization free energy of solvation -78.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds