Wall clock time and date at job start Fri Apr 10 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40586 * 127.38921 * 2 1 4 4 N 1.28908 * 106.82908 * 180.29145 * 3 2 1 5 5 N 1.28411 * 110.34608 * 359.74632 * 4 3 2 6 6 C 1.31543 * 110.50046 * 0.02562 * 5 4 3 7 7 S 1.76198 * 126.45225 * 179.97438 * 6 5 4 8 8 C 1.81003 * 100.00083 * 0.02897 * 7 6 5 9 9 C 1.53002 * 109.47121 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46972 * 179.97438 * 9 8 7 11 11 O 1.21276 * 119.99882 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99798 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.63109 * 0.02562 * 12 10 9 14 14 C 1.53188 * 108.77536 * 233.63140 * 13 12 10 15 15 C 1.53044 * 109.30981 * 305.36440 * 14 13 12 16 16 C 1.53034 * 109.54023 * 61.36909 * 15 14 13 17 17 H 1.08999 * 109.49890 * 58.58049 * 16 15 14 18 18 C 1.50702 * 109.50241 * 178.65089 * 16 15 14 19 19 H 1.07996 * 119.99599 * 35.11925 * 18 16 15 20 20 C 1.37875 * 120.00126 * 215.12583 * 18 16 15 21 21 N 1.31516 * 120.00081 * 184.98316 * 20 18 16 22 22 Si 1.86800 * 119.99906 * 4.97857 * 20 18 16 23 23 H 1.48504 * 109.47179 * 84.79390 * 22 20 18 24 24 H 1.48504 * 109.47032 * 204.79189 * 22 20 18 25 25 H 1.48501 * 109.47490 * 324.79335 * 22 20 18 26 26 C 1.46918 * 120.62772 * 180.02562 * 12 10 9 27 27 H 1.09002 * 109.46717 * 270.13187 * 1 2 3 28 28 H 1.09001 * 109.47256 * 30.13166 * 1 2 3 29 29 H 1.08995 * 109.47622 * 150.13631 * 1 2 3 30 30 H 1.09003 * 109.47173 * 60.00024 * 8 7 6 31 31 H 1.08999 * 109.47138 * 299.99517 * 8 7 6 32 32 H 1.08996 * 109.47013 * 59.99604 * 9 8 7 33 33 H 1.09004 * 109.46912 * 300.00201 * 9 8 7 34 34 H 1.09000 * 109.58603 * 113.84095 * 13 12 10 35 35 H 1.09005 * 109.70058 * 353.48795 * 13 12 10 36 36 H 1.09002 * 109.49795 * 185.41686 * 14 13 12 37 37 H 1.08996 * 109.50237 * 65.31324 * 14 13 12 38 38 H 1.09000 * 109.46043 * 301.34515 * 15 14 13 39 39 H 1.09006 * 109.45720 * 181.38656 * 15 14 13 40 40 H 0.96999 * 120.00142 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.59143 * 6.57755 * 26 12 10 42 42 H 1.09006 * 109.58629 * 246.15748 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3187 1.1170 0.0000 4 7 3.5256 0.6643 -0.0063 5 7 3.5208 -0.6198 -0.0049 6 6 2.2870 -1.0759 0.0019 7 16 1.7965 -2.7682 0.0056 8 6 3.4210 -3.5664 -0.0016 9 6 3.2426 -5.0860 0.0011 10 6 4.5952 -5.7505 -0.0055 11 8 5.6025 -5.0752 -0.0113 12 7 4.6853 -7.0953 -0.0040 13 6 3.4739 -7.9267 0.0036 14 6 3.5602 -8.9131 1.1725 15 6 4.8657 -9.7053 1.0709 16 6 6.0548 -8.7460 1.1597 17 1 6.0111 -8.1986 2.1013 18 6 7.3400 -9.5302 1.0929 19 1 7.4022 -10.4129 0.4739 20 6 8.4361 -9.1207 1.8221 21 7 9.5854 -9.7462 1.6891 22 14 8.2890 -7.6774 2.9988 23 1 7.7709 -8.1552 4.3059 24 1 9.6249 -7.0583 3.1923 25 1 7.3542 -6.6713 2.4338 26 6 5.9967 -7.7576 -0.0098 27 1 -0.3633 0.0024 1.0277 28 1 -0.3634 0.8888 -0.5159 29 1 -0.3634 -0.8911 -0.5117 30 1 3.9780 -3.2647 0.8855 31 1 3.9694 -3.2662 -0.8945 32 1 2.6855 -5.3879 -0.8857 33 1 2.6944 -5.3858 0.8942 34 1 3.4027 -8.4772 -0.9345 35 1 2.5946 -7.2939 0.1236 36 1 2.7143 -9.5993 1.1327 37 1 3.5401 -8.3642 2.1140 38 1 4.8963 -10.2343 0.1184 39 1 4.9181 -10.4251 1.8878 40 1 10.3566 -9.4579 2.2018 41 1 6.7834 -7.0116 0.1026 42 1 6.1309 -8.2943 -0.9491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:10 Heat of formation + Delta-G solvation = 74.103115 kcal Electronic energy + Delta-G solvation = -24817.213060 eV Core-core repulsion = 21154.099868 eV Total energy + Delta-G solvation = -3663.113192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.19298 -39.87730 -37.12423 -35.58495 -33.66894 -33.01108 -32.48631 -31.90089 -30.50963 -28.75060 -26.17540 -25.22832 -24.22668 -23.50679 -23.04739 -21.93277 -19.76819 -18.64037 -18.37686 -17.36831 -17.16371 -17.06861 -16.73517 -15.92966 -15.57183 -14.89728 -14.51907 -14.31189 -14.26925 -14.01995 -13.87723 -13.51501 -13.18461 -12.83582 -12.78748 -12.60805 -12.52212 -12.46573 -12.30799 -11.81560 -11.51370 -11.31064 -11.29327 -11.10247 -11.03132 -10.84401 -10.75658 -10.60449 -10.11927 -9.73676 -9.72446 -9.35266 -9.13282 -8.60302 -8.48181 -8.13133 -6.13654 -4.15036 0.25621 0.49654 1.40456 1.69973 1.89346 2.84778 3.29132 3.37288 3.41029 3.47732 3.74611 4.29577 4.40895 4.41433 4.42360 4.64616 4.65509 4.70762 4.95194 4.99285 5.00707 5.17727 5.19629 5.26516 5.38394 5.46502 5.55961 5.67451 5.77163 5.93323 6.09505 6.22515 6.36527 6.56200 6.62243 6.74064 6.83713 7.22100 7.31588 7.69152 7.79722 8.06778 8.41525 8.48941 8.91230 9.49560 10.98725 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.002765 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.409341 B =10125.964275 C =11133.428919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.368 5.368 3 N -0.085 5.085 4 N -0.029 5.029 5 N -0.325 5.325 6 C 0.215 3.785 7 S 0.029 5.971 8 C -0.090 4.090 9 C -0.129 4.129 10 C 0.512 3.488 11 O -0.539 6.539 12 N -0.606 5.606 13 C 0.108 3.892 14 C -0.138 4.138 15 C -0.106 4.106 16 C 0.006 3.994 17 H 0.034 0.966 18 C -0.516 4.516 19 H 0.075 0.925 20 C 0.076 3.924 21 N -0.894 5.894 22 Si 0.872 3.128 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.259 1.259 26 C 0.113 3.887 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.265 0.735 41 H 0.083 0.917 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.191 12.183 -3.878 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.168 5.168 3 N -0.072 5.072 4 N -0.025 5.025 5 N -0.182 5.182 6 C -0.170 4.170 7 S 0.255 5.745 8 C -0.240 4.240 9 C -0.171 4.171 10 C 0.297 3.703 11 O -0.416 6.416 12 N -0.339 5.339 13 C -0.015 4.015 14 C -0.176 4.176 15 C -0.143 4.143 16 C -0.014 4.014 17 H 0.053 0.947 18 C -0.554 4.554 19 H 0.093 0.907 20 C -0.127 4.127 21 N -0.531 5.531 22 Si 0.699 3.301 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.183 1.183 26 C -0.007 4.007 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.581 13.132 -3.831 28.131 hybrid contribution 0.318 0.763 0.694 1.080 sum -24.263 13.895 -3.136 28.135 Atomic orbital electron populations 1.22269 0.71805 1.06152 1.05277 1.51518 1.09716 1.03238 1.52288 1.82487 0.95091 1.07237 1.22372 1.77913 1.12597 1.02792 1.09195 1.75060 1.16417 1.03234 1.23444 1.27718 0.89961 0.98095 1.01193 1.85496 1.12935 0.85041 1.91008 1.23516 0.93952 0.96595 1.09894 1.21454 0.97938 0.92360 1.05392 1.20123 0.90250 0.82588 0.77346 1.90743 1.37736 1.63026 1.50097 1.48498 1.09006 1.04728 1.71681 1.21716 0.86702 0.93640 0.99472 1.22014 0.99620 0.98134 0.97880 1.21586 0.93027 0.98236 1.01487 1.19476 0.94976 0.93082 0.93854 0.94742 1.20876 0.93814 1.11981 1.28695 0.90676 1.25080 0.95058 0.96103 0.96482 1.69896 1.00807 1.41331 1.41092 0.86920 0.77821 0.83624 0.81732 1.20288 1.21432 1.18340 1.22483 0.81636 0.95900 1.00717 0.88687 0.87568 0.87977 0.86959 0.86944 0.87916 0.87880 0.91412 0.90826 0.91656 0.92104 0.92700 0.92152 0.92470 0.89868 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.32 11.40 59.85 0.68 1.00 16 2 N -0.37 -3.49 4.09 -68.10 -0.28 -3.77 16 3 N -0.08 -1.07 13.93 60.35 0.84 -0.23 16 4 N -0.03 -0.44 13.38 60.35 0.81 0.37 16 5 N -0.33 -4.72 11.57 30.50 0.35 -4.37 16 6 C 0.22 2.37 8.15 -89.17 -0.73 1.64 16 7 S 0.03 0.23 21.79 -107.50 -2.34 -2.12 16 8 C -0.09 -0.97 4.52 37.16 0.17 -0.80 16 9 C -0.13 -1.29 4.05 -27.88 -0.11 -1.41 16 10 C 0.51 8.18 7.70 -10.98 -0.08 8.10 16 11 O -0.54 -11.13 15.39 5.56 0.09 -11.04 16 12 N -0.61 -9.88 2.97 -172.74 -0.51 -10.39 16 13 C 0.11 1.28 6.34 -3.71 -0.02 1.26 16 14 C -0.14 -1.82 6.08 -26.61 -0.16 -1.98 16 15 C -0.11 -1.87 5.15 -26.69 -0.14 -2.00 16 16 C 0.01 0.13 1.92 -91.63 -0.18 -0.05 16 17 H 0.03 0.80 5.28 -51.93 -0.27 0.53 16 18 C -0.52 -13.81 8.87 -34.44 -0.31 -14.12 16 19 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 20 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 21 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 22 Si 0.87 21.92 26.99 -169.99 -4.59 17.34 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.26 -6.54 6.82 56.52 0.39 -6.16 16 26 C 0.11 2.34 5.70 -3.69 -0.02 2.32 16 27 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.18 7.85 -51.93 -0.41 -0.23 16 30 H 0.11 1.42 8.10 -51.91 -0.42 1.00 16 31 H 0.11 1.36 8.10 -51.92 -0.42 0.94 16 32 H 0.10 0.75 7.94 -51.93 -0.41 0.34 16 33 H 0.10 0.82 7.70 -51.93 -0.40 0.42 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.61 5.94 -51.93 -0.31 0.30 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.08 1.98 7.00 -51.93 -0.36 1.62 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -35.52 359.86 -6.40 -41.92 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.96 Total: -2.97 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -1.00 Total: -3.98 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 1.98 Total: -44.56 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.59 Total: 17.34 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.34 Total: -2.12 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.52 -6.40 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.022 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds