Wall clock time and date at job start Fri Apr 10 2020 18:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47510 * 2 1 4 4 C 1.42904 * 114.00059 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46885 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.46873 * 179.97438 * 5 4 3 7 7 C 1.34288 * 125.75353 * 125.24701 * 6 5 4 8 8 C 1.38104 * 107.40755 * 180.13101 * 7 6 5 9 9 C 1.47351 * 126.42428 * 179.89501 * 8 7 6 10 10 O 1.21631 * 120.00025 * 5.45988 * 9 8 7 11 11 N 1.34781 * 120.00017 * 185.46239 * 9 8 7 12 12 C 1.36974 * 120.00070 * 5.25460 * 11 9 8 13 13 H 1.07999 * 120.00512 * 47.76860 * 12 11 9 14 14 C 1.38980 * 119.99776 * 228.04407 * 12 11 9 15 15 N 1.31409 * 119.99925 * 203.56328 * 14 12 11 16 16 Si 1.86799 * 120.00168 * 23.56709 * 14 12 11 17 17 H 1.48495 * 109.47313 * 86.58031 * 16 14 12 18 18 H 1.48496 * 109.47153 * 206.58748 * 16 14 12 19 19 H 1.48508 * 109.46829 * 326.58188 * 16 14 12 20 20 C 1.46502 * 119.99671 * 185.24989 * 11 9 8 21 21 C 1.50697 * 109.47225 * 274.52946 * 20 11 9 22 22 O 1.20818 * 120.00211 * 0.02562 * 21 20 11 23 23 O 1.34230 * 119.99868 * 180.02562 * 21 20 11 24 24 C 1.45198 * 116.99824 * 180.02562 * 23 21 20 25 25 C 1.41318 * 107.15353 * 359.63573 * 8 7 6 26 26 N 1.30446 * 108.02998 * 0.22296 * 25 8 7 27 27 H 1.09009 * 109.46451 * 60.00419 * 1 2 3 28 28 H 1.08992 * 109.47656 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47361 * 300.00830 * 1 2 3 30 30 H 1.08996 * 109.47361 * 239.99170 * 2 1 3 31 31 H 1.09009 * 109.46451 * 119.99580 * 2 1 3 32 32 H 1.08992 * 109.47263 * 59.99506 * 4 3 2 33 33 H 1.09001 * 109.46497 * 299.99343 * 4 3 2 34 34 H 1.09004 * 109.47076 * 59.99739 * 5 4 3 35 35 H 1.09001 * 109.46878 * 299.99999 * 5 4 3 36 36 H 1.08004 * 126.30033 * 0.02562 * 7 6 5 37 37 H 0.96998 * 119.99811 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.47105 * 34.53280 * 20 11 9 39 39 H 1.09003 * 109.46618 * 154.53112 * 20 11 9 40 40 H 1.09002 * 109.47138 * 179.97438 * 24 23 21 41 41 H 1.08994 * 109.47876 * 300.00148 * 24 23 21 42 42 H 1.09007 * 109.47073 * 60.00817 * 24 23 21 43 43 H 1.08001 * 125.98641 * 180.19698 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 7 5.2859 3.0538 0.0011 7 6 6.0193 3.7421 -0.8887 8 6 7.3457 3.5932 -0.5342 9 6 8.5077 4.1741 -1.2296 10 8 8.3396 4.9409 -2.1587 11 7 9.7569 3.8555 -0.8363 12 6 9.9485 2.9111 0.1371 13 1 9.4287 1.9660 0.0824 14 6 10.8076 3.1713 1.1981 15 7 11.3564 2.1765 1.8583 16 14 11.1819 4.9352 1.6859 17 1 10.1467 5.4166 2.6355 18 1 12.5161 4.9968 2.3350 19 1 11.1806 5.7946 0.4748 20 6 10.9097 4.5194 -1.4501 21 6 11.2902 3.7965 -2.7164 22 8 10.6626 2.8266 -3.0703 23 8 12.3264 4.2301 -3.4512 24 6 12.6355 3.4855 -4.6588 25 6 7.3793 2.7844 0.6241 26 7 6.1514 2.4702 0.9329 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 3.8341 0.9763 -0.8890 33 1 3.8332 0.9766 0.8909 34 1 3.4223 3.4223 0.8894 35 1 3.4231 3.4212 -0.8906 36 1 5.6415 4.3067 -1.7284 37 1 11.9557 2.3581 2.5991 38 1 10.6518 5.5521 -1.6847 39 1 11.7500 4.5034 -0.7560 40 1 13.4915 3.9406 -5.1572 41 1 12.8722 2.4538 -4.3991 42 1 11.7746 3.5037 -5.3272 43 1 8.2662 2.4795 1.1597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598898865.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:15 Heat of formation + Delta-G solvation = -63.688709 kcal Electronic energy + Delta-G solvation = -27688.446108 eV Core-core repulsion = 23544.312192 eV Total energy + Delta-G solvation = -4144.133916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76852 -39.85108 -38.41942 -38.11082 -35.81203 -34.87828 -33.79033 -32.12431 -31.45777 -29.86542 -29.16610 -27.91991 -26.40673 -25.02910 -23.42324 -23.04471 -21.79665 -20.68582 -20.04728 -19.06507 -17.87376 -17.24094 -17.03386 -16.54601 -16.44274 -15.89023 -15.49174 -15.31637 -15.19646 -15.02874 -14.50053 -14.06800 -13.90646 -13.54403 -13.35477 -13.04626 -12.88114 -12.67945 -12.60571 -12.38382 -12.26667 -12.01600 -11.84166 -11.70030 -11.40031 -11.35929 -11.34394 -11.06096 -10.68052 -10.35427 -10.29488 -10.09632 -9.83121 -9.74719 -9.23022 -8.95560 -8.75845 -8.05826 -7.78261 -6.61265 -4.28850 2.09976 2.59257 2.94342 2.95801 3.04689 3.16634 3.24887 3.29887 3.61704 4.03229 4.28453 4.41214 4.64111 4.76081 4.79106 4.86074 4.99642 5.12309 5.15243 5.27537 5.37158 5.40590 5.45130 5.48411 5.52612 5.59511 5.63396 5.81110 5.82392 5.83970 5.86700 5.99976 6.10803 6.26636 6.59736 6.89647 6.91844 7.17822 7.33357 7.37829 7.94670 8.14277 8.24002 8.47195 8.84961 9.20566 9.57074 10.46239 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.003174 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.688478 B = 8819.807493 C = 9858.076906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.391 6.391 4 C 0.053 3.947 5 C 0.142 3.858 6 N -0.378 5.378 7 C 0.102 3.898 8 C -0.251 4.251 9 C 0.574 3.426 10 O -0.597 6.597 11 N -0.448 5.448 12 C -0.351 4.351 13 H 0.109 0.891 14 C 0.071 3.929 15 N -0.843 5.843 16 Si 0.860 3.140 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.253 1.253 20 C 0.123 3.877 21 C 0.447 3.553 22 O -0.491 6.491 23 O -0.371 6.371 24 C 0.037 3.963 25 C 0.102 3.898 26 N -0.325 5.325 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.178 0.822 37 H 0.279 0.721 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 0.116 -3.648 10.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.310 6.310 4 C -0.024 4.024 5 C 0.020 3.980 6 N -0.159 5.159 7 C -0.047 4.047 8 C -0.266 4.266 9 C 0.366 3.634 10 O -0.482 6.482 11 N -0.169 5.169 12 C -0.477 4.477 13 H 0.126 0.874 14 C -0.139 4.139 15 N -0.476 5.476 16 Si 0.685 3.315 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.178 1.178 20 C -0.003 4.003 21 C 0.288 3.712 22 O -0.376 6.376 23 O -0.288 6.288 24 C -0.058 4.058 25 C -0.085 4.085 26 N -0.144 5.144 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.195 0.805 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -11.217 -0.412 -3.255 11.687 hybrid contribution 1.097 0.683 -0.404 1.354 sum -10.120 0.271 -3.659 10.765 Atomic orbital electron populations 1.21746 0.93618 1.02297 1.03132 1.22471 0.95484 0.83340 1.00458 1.87761 1.20538 1.27058 1.95641 1.22639 0.81168 0.96503 1.02133 1.21261 0.75402 0.96635 1.04751 1.48249 1.05909 1.39654 1.22063 1.22792 0.91232 0.96045 0.94663 1.20133 0.92357 1.11359 1.02729 1.17398 0.82579 0.80487 0.82915 1.90625 1.86399 1.39568 1.31598 1.43013 1.01610 1.37974 1.34306 1.19066 1.31003 0.96925 1.00752 0.87403 1.25536 0.94756 0.97903 0.95694 1.69821 1.25409 1.31954 1.20369 0.87196 0.78462 0.85471 0.80390 1.19343 1.20554 1.17772 1.21509 0.92526 0.96855 0.89365 1.24968 0.76977 0.83738 0.85562 1.90607 1.51252 1.26114 1.69629 1.86528 1.49541 1.56574 1.36142 1.23107 1.00971 0.96697 0.84975 1.25825 0.95250 0.92817 0.94576 1.77212 1.01063 1.22468 1.13699 0.91850 0.91034 0.91790 0.93256 0.93104 0.92691 0.91410 0.89100 0.88138 0.80462 0.91092 0.87648 0.87180 0.88850 0.92294 0.92458 0.75627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.39 -4.52 10.34 -35.23 -0.36 -4.89 16 4 C 0.05 0.65 6.11 37.16 0.23 0.87 16 5 C 0.14 1.74 6.86 -4.04 -0.03 1.71 16 6 N -0.38 -6.26 3.65 -60.79 -0.22 -6.48 16 7 C 0.10 1.82 11.26 -16.53 -0.19 1.64 16 8 C -0.25 -5.41 6.01 -105.07 -0.63 -6.04 16 9 C 0.57 13.73 7.47 -12.55 -0.09 13.64 16 10 O -0.60 -15.01 16.62 5.25 0.09 -14.92 16 11 N -0.45 -10.70 1.47 -117.33 -0.17 -10.87 16 12 C -0.35 -8.66 6.56 -14.98 -0.10 -8.76 16 13 H 0.11 2.87 6.31 -52.49 -0.33 2.53 16 14 C 0.07 1.73 5.11 -17.46 -0.09 1.64 16 15 N -0.84 -21.59 13.96 55.50 0.77 -20.82 16 16 Si 0.86 18.42 26.63 -169.99 -4.53 13.89 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 19 H -0.25 -5.14 5.37 56.52 0.30 -4.84 16 20 C 0.12 2.67 3.99 -5.19 -0.02 2.65 16 21 C 0.45 9.79 7.99 36.00 0.29 10.08 16 22 O -0.49 -12.19 16.08 -18.74 -0.30 -12.49 16 23 O -0.37 -6.85 10.57 -39.26 -0.41 -7.26 16 24 C 0.04 0.53 10.56 101.05 1.07 1.60 16 25 C 0.10 2.16 10.16 -16.97 -0.17 1.98 16 26 N -0.32 -6.32 12.33 30.87 0.38 -5.94 16 27 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.18 2.67 8.06 -52.48 -0.42 2.25 16 37 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.11 2.15 7.59 -51.93 -0.39 1.76 16 39 H 0.11 2.28 5.06 -51.93 -0.26 2.02 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.23 5.10 4.96 -52.49 -0.26 4.84 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -31.52 368.14 -4.29 -35.81 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.97 Total: 7.31 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 0.89 Total: 21.09 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.76 Total: -44.11 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.99 Total: -39.55 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.53 Total: 13.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.52 -4.29 -35.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598898865.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.874 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds