Wall clock time and date at job start Fri Apr 10 2020 18:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99931 * 2 1 4 4 C 1.52999 * 109.47188 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47346 * 64.99939 * 4 3 2 6 6 C 1.46495 * 120.00628 * 270.00398 * 5 4 3 7 7 C 1.50703 * 109.46981 * 270.00193 * 6 5 4 8 8 H 1.07994 * 120.00490 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99568 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00390 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99579 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47161 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46870 * 119.99569 * 11 9 7 14 14 H 1.48493 * 109.46858 * 239.99577 * 11 9 7 15 15 C 1.34774 * 119.99544 * 90.00236 * 5 4 3 16 16 O 1.21279 * 120.00472 * 0.02562 * 15 5 4 17 17 C 1.50706 * 120.00020 * 180.02562 * 15 5 4 18 18 N 1.46496 * 109.47106 * 179.97438 * 17 15 5 19 19 C 1.34232 * 125.74431 * 124.99996 * 18 17 15 20 20 C 1.38120 * 107.41061 * 179.97438 * 19 18 17 21 21 C 1.47289 * 126.42777 * 179.97438 * 20 19 18 22 22 O 1.21524 * 119.99716 * 359.97438 * 21 20 19 23 23 O 1.34750 * 120.00221 * 179.97438 * 21 20 19 24 24 C 1.45197 * 117.00249 * 179.97438 * 23 21 20 25 25 C 1.41343 * 107.14553 * 359.97438 * 20 19 18 26 26 N 1.30431 * 108.01316 * 359.75745 * 25 20 19 27 27 H 1.08997 * 109.46836 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46737 * 299.99443 * 1 2 3 29 29 H 1.08994 * 109.47095 * 59.99506 * 1 2 3 30 30 H 1.09007 * 109.46940 * 60.00805 * 3 2 1 31 31 H 1.08999 * 109.47578 * 300.00612 * 3 2 1 32 32 H 1.09008 * 109.46554 * 305.00182 * 4 3 2 33 33 H 1.09003 * 109.47253 * 185.00958 * 4 3 2 34 34 H 1.09004 * 109.46971 * 29.99775 * 6 5 4 35 35 H 1.08993 * 109.47768 * 149.99839 * 6 5 4 36 36 H 0.97005 * 120.00422 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46953 * 299.99667 * 17 15 5 38 38 H 1.09000 * 109.47318 * 59.99264 * 17 15 5 39 39 H 1.08003 * 126.29077 * 359.96231 * 19 18 17 40 40 H 1.08989 * 109.47172 * 300.00231 * 24 23 21 41 41 H 1.08997 * 109.46843 * 60.00250 * 24 23 21 42 42 H 1.09002 * 109.47013 * 179.97438 * 24 23 21 43 43 H 1.07998 * 125.99449 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1053 -0.8919 -1.3429 7 6 5.5011 -1.2977 -0.9450 8 1 6.2199 -0.5459 -0.6544 9 6 5.8603 -2.6288 -0.9519 10 7 4.9850 -3.5444 -1.3052 11 14 7.5907 -3.1317 -0.4593 12 1 8.3768 -1.9218 -0.1082 13 1 7.5272 -4.0391 0.7144 14 1 8.2437 -3.8339 -1.5931 15 6 4.2616 1.3339 -2.3217 16 8 4.1548 2.5396 -2.2470 17 6 4.7140 0.6959 -3.6099 18 7 4.9588 1.7372 -4.6109 19 6 6.1008 1.9158 -5.2933 20 6 5.9167 2.9984 -6.1310 21 6 6.9064 3.5583 -7.0672 22 8 8.0112 3.0595 -7.1533 23 8 6.5869 4.6235 -7.8281 24 6 7.6117 5.1223 -8.7276 25 6 4.6002 3.4682 -5.9214 26 7 4.0394 2.7089 -5.0214 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8465 -0.8899 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1766 0.0891 34 1 3.3853 -1.3629 -0.6735 35 1 3.9121 -1.2113 -2.3669 36 1 5.2376 -4.4810 -1.3097 37 1 5.6328 0.1362 -3.4351 38 1 3.9398 0.0193 -3.9718 39 1 6.9987 1.3223 -5.2036 40 1 8.4851 5.4260 -8.1506 41 1 7.8943 4.3363 -9.4279 42 1 7.2249 5.9787 -9.2799 43 1 4.1383 4.3066 -6.4216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599329921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:17 Heat of formation + Delta-G solvation = -99.906378 kcal Electronic energy + Delta-G solvation = -27635.925525 eV Core-core repulsion = 23490.221092 eV Total energy + Delta-G solvation = -4145.704432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54432 -41.06141 -40.62209 -38.72010 -37.34016 -36.69407 -34.71984 -34.47759 -31.69071 -31.55652 -29.46709 -28.82114 -28.02113 -27.00997 -24.86903 -24.37929 -23.89964 -22.26178 -21.38527 -20.25687 -18.98127 -18.58493 -18.29945 -17.90710 -17.55718 -17.29719 -17.14181 -16.80371 -16.65857 -16.25573 -16.03925 -15.79877 -15.43846 -15.05247 -14.57468 -14.40959 -14.30908 -14.04429 -13.94395 -13.62585 -13.52860 -13.29991 -13.01771 -12.95768 -12.79433 -12.72494 -12.61929 -12.19105 -12.13135 -11.93903 -11.72269 -11.65234 -11.38239 -11.17746 -10.65342 -10.63046 -10.43707 -9.85830 -9.50998 -8.17975 -6.33030 0.28142 1.02191 1.16615 1.42749 1.47440 1.55320 1.59877 1.92199 2.17955 2.22453 2.44176 2.92287 3.12932 3.40544 3.64983 3.73402 3.99264 4.02882 4.12627 4.15157 4.21997 4.36963 4.39647 4.41561 4.44070 4.52459 4.54940 4.60697 4.62139 4.80620 4.84358 4.87691 4.97769 5.31079 5.35506 5.44314 5.57311 5.69935 5.82326 6.07070 6.26152 6.51022 6.52339 6.80834 6.82149 7.18220 7.40232 8.87498 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.003577 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.118129 B = 7826.054865 C = 9959.062122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.056 3.944 4 C 0.119 3.881 5 N -0.585 5.585 6 C 0.254 3.746 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.027 3.973 10 N -0.915 5.915 11 Si 0.952 3.048 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.277 1.277 15 C 0.503 3.497 16 O -0.572 6.572 17 C 0.117 3.883 18 N -0.344 5.344 19 C 0.144 3.856 20 C -0.303 4.303 21 C 0.553 3.447 22 O -0.551 6.551 23 O -0.356 6.356 24 C 0.031 3.969 25 C 0.101 3.899 26 N -0.306 5.306 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.031 0.969 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.150 0.850 38 H 0.127 0.873 39 H 0.211 0.789 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.135 0.865 43 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 11.552 -7.591 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.021 4.021 4 C -0.004 4.004 5 N -0.316 5.316 6 C 0.133 3.867 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.174 4.174 10 N -0.554 5.554 11 Si 0.778 3.222 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.203 1.203 15 C 0.290 3.710 16 O -0.453 6.453 17 C -0.007 4.007 18 N -0.120 5.120 19 C -0.009 4.009 20 C -0.316 4.316 21 C 0.400 3.600 22 O -0.443 6.443 23 O -0.272 6.272 24 C -0.062 4.062 25 C -0.088 4.088 26 N -0.124 5.124 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.168 0.832 38 H 0.144 0.856 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.153 0.847 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -3.157 11.333 -6.800 13.588 hybrid contribution 1.494 -0.386 -0.085 1.546 sum -1.663 10.947 -6.885 13.038 Atomic orbital electron populations 1.22870 0.80010 1.03385 1.00560 1.87995 1.21123 1.28125 1.95475 1.22910 0.93642 0.84810 1.00788 1.21493 0.92792 0.99416 0.86711 1.48094 1.63540 1.09068 1.10864 1.19168 0.96120 0.73738 0.97658 1.21728 0.97826 0.92501 1.46733 0.92521 1.25581 1.00627 0.96418 0.94794 1.70019 1.35901 1.01571 1.47924 0.85591 0.80335 0.78239 0.77999 1.19449 1.20933 1.20289 1.20500 0.77827 0.86821 0.85845 1.90665 1.55400 1.14946 1.84280 1.21810 1.07244 0.86851 0.84752 1.48177 1.09659 1.24287 1.29858 1.23413 0.91458 0.95960 0.90038 1.19308 0.97212 1.05313 1.09780 1.19947 0.84877 0.77421 0.77729 1.90814 1.24145 1.61371 1.67976 1.86522 1.45466 1.44152 1.51075 1.23561 0.90490 1.00477 0.91697 1.24646 0.91882 0.98559 0.93686 1.77328 1.16433 1.02315 1.16307 0.89158 0.92454 0.94092 0.90110 0.94353 0.89718 0.89013 0.95064 0.95255 0.92354 0.83242 0.85578 0.77236 0.92121 0.91904 0.84722 0.76013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -13.89 9.53 -148.98 -1.42 -15.31 16 3 C 0.06 1.74 6.28 71.98 0.45 2.19 16 4 C 0.12 4.17 5.81 86.38 0.50 4.68 16 5 N -0.59 -23.27 2.42 -826.16 -2.00 -25.27 16 6 C 0.25 11.41 4.78 85.63 0.41 11.82 16 7 C -0.55 -26.64 9.28 25.60 0.24 -26.40 16 8 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.03 1.34 5.46 84.66 0.46 1.80 16 10 N -0.92 -48.29 13.29 21.45 0.28 -48.01 16 11 Si 0.95 39.94 29.54 68.60 2.03 41.96 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 14 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 15 C 0.50 19.75 7.70 87.66 0.67 20.42 16 16 O -0.57 -24.85 15.29 -3.02 -0.05 -24.89 16 17 C 0.12 3.94 5.52 85.64 0.47 4.41 16 18 N -0.34 -11.27 3.37 -349.98 -1.18 -12.45 16 19 C 0.14 4.17 11.25 84.30 0.95 5.12 16 20 C -0.30 -8.63 6.13 -20.16 -0.12 -8.75 16 21 C 0.55 15.37 7.95 70.20 0.56 15.93 16 22 O -0.55 -17.74 16.69 19.76 0.33 -17.41 16 23 O -0.36 -8.00 10.41 -56.61 -0.59 -8.59 16 24 C 0.03 0.47 10.57 113.37 1.20 1.67 16 25 C 0.10 2.80 11.87 85.66 1.02 3.81 16 26 N -0.31 -10.40 11.56 -56.25 -0.65 -11.05 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 3.02 8.07 -2.38 -0.02 3.00 16 33 H 0.09 3.11 7.42 -2.39 -0.02 3.10 16 34 H 0.03 1.57 7.12 -2.38 -0.02 1.55 16 35 H 0.03 1.34 6.44 -2.39 -0.02 1.32 16 36 H 0.27 13.42 8.31 -92.70 -0.77 12.65 16 37 H 0.15 4.74 7.92 -2.39 -0.02 4.72 16 38 H 0.13 4.03 7.40 -2.39 -0.02 4.02 16 39 H 0.21 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.22 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -67.77 378.76 5.84 -61.94 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 1.02 Total: 20.45 kcal Atomic # 6 Polarization: 30.58 SS G_CDS: 8.06 Total: 38.64 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -3.54 Total: -96.78 kcal Atomic # 8 Polarization: -64.48 SS G_CDS: -1.73 Total: -66.20 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Total: -67.77 5.84 -61.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599329921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.970 kcal (2) G-P(sol) polarization free energy of solvation -67.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds