Wall clock time and date at job start Fri Apr 10 2020 18:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00169 * 2 1 4 4 C 1.53000 * 109.47282 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47430 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47305 * 179.97438 * 5 4 3 7 7 C 1.34288 * 125.74835 * 124.99849 * 6 5 4 8 8 C 1.38105 * 107.40376 * 180.02562 * 7 6 5 9 9 C 1.47359 * 126.42349 * 179.97438 * 8 7 6 10 10 O 1.21629 * 119.99777 * 5.81523 * 9 8 7 11 11 N 1.34777 * 120.00100 * 185.81002 * 9 8 7 12 12 C 1.36982 * 119.99844 * 5.26896 * 11 9 8 13 13 H 1.07990 * 120.00485 * 47.86143 * 12 11 9 14 14 C 1.38978 * 119.99280 * 228.14384 * 12 11 9 15 15 N 1.31413 * 119.99620 * 203.45471 * 14 12 11 16 16 Si 1.86795 * 120.00364 * 23.45208 * 14 12 11 17 17 H 1.48498 * 109.47337 * 86.51526 * 16 14 12 18 18 H 1.48504 * 109.47097 * 206.51101 * 16 14 12 19 19 H 1.48504 * 109.47259 * 326.51154 * 16 14 12 20 20 C 1.46500 * 119.99734 * 185.25844 * 11 9 8 21 21 C 1.50697 * 109.47314 * 274.56419 * 20 11 9 22 22 O 1.20824 * 119.99946 * 359.97438 * 21 20 11 23 23 O 1.34233 * 119.99937 * 180.02562 * 21 20 11 24 24 C 1.45198 * 116.99855 * 180.02562 * 23 21 20 25 25 C 1.41318 * 107.15863 * 0.23904 * 8 7 6 26 26 N 1.30450 * 108.02605 * 359.59311 * 25 8 7 27 27 H 1.08999 * 109.46761 * 300.00795 * 1 2 3 28 28 H 1.09000 * 109.46496 * 60.00410 * 1 2 3 29 29 H 1.08994 * 109.47484 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47567 * 59.99292 * 3 2 1 31 31 H 1.09009 * 109.47128 * 299.99467 * 3 2 1 32 32 H 1.09002 * 109.47474 * 59.99141 * 4 3 2 33 33 H 1.09004 * 109.46931 * 299.99486 * 4 3 2 34 34 H 1.09001 * 109.47207 * 59.99852 * 5 4 3 35 35 H 1.08996 * 109.46972 * 299.99507 * 5 4 3 36 36 H 1.08006 * 126.29839 * 0.03674 * 7 6 5 37 37 H 0.97001 * 120.00048 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.47166 * 34.57070 * 20 11 9 39 39 H 1.08997 * 109.46541 * 154.56750 * 20 11 9 40 40 H 1.09002 * 109.47247 * 180.02562 * 24 23 21 41 41 H 1.09012 * 109.46918 * 299.99363 * 24 23 21 42 42 H 1.08999 * 109.47947 * 59.99084 * 24 23 21 43 43 H 1.08001 * 125.99064 * 179.76414 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5822 -0.0013 6 7 5.6183 2.4665 -0.0013 7 6 6.4497 3.0273 -0.8944 8 6 7.7368 2.6749 -0.5385 9 6 8.9751 3.0650 -1.2355 10 8 8.9292 3.8501 -2.1633 11 7 10.1586 2.5518 -0.8449 12 6 10.1995 1.5874 0.1270 13 1 9.5375 0.7361 0.0713 14 6 11.0892 1.7076 1.1879 15 7 11.4733 0.6379 1.8477 16 14 11.7391 3.3894 1.6761 17 1 10.7929 4.0296 2.6248 18 1 13.0655 3.2379 2.3266 19 1 11.8757 4.2379 0.4650 20 6 11.4011 3.0253 -1.4599 21 6 11.6597 2.2537 -2.7282 22 8 10.8858 1.3959 -3.0819 23 8 12.7503 2.5187 -3.4645 24 6 12.9350 1.7368 -4.6740 25 6 7.6433 1.8650 0.6158 26 7 6.3819 1.7526 0.9289 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8568 0.6437 -0.8908 33 1 3.8575 0.6435 0.8892 34 1 3.8367 3.1234 0.8887 35 1 3.8359 3.1228 -0.8913 36 1 6.1644 3.6411 -1.7360 37 1 12.0945 0.7217 2.5880 38 1 11.3101 4.0863 -1.6922 39 1 12.2294 2.8747 -0.7677 40 1 13.8520 2.0505 -5.1729 41 1 13.0054 0.6800 -4.4162 42 1 12.0867 1.8924 -5.3405 43 1 8.4712 1.4196 1.1474 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599537406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:20 Heat of formation + Delta-G solvation = -64.177220 kcal Electronic energy + Delta-G solvation = -27651.518774 eV Core-core repulsion = 23507.363674 eV Total energy + Delta-G solvation = -4144.155100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.71763 -39.83004 -38.35371 -38.12306 -35.79649 -34.88242 -34.61067 -32.10049 -30.98837 -29.81228 -28.63669 -27.26297 -26.46870 -25.19100 -24.88311 -22.20742 -21.77593 -20.62536 -20.03229 -19.03133 -17.85917 -17.21491 -16.85529 -16.52589 -16.30142 -15.93980 -15.68809 -15.37477 -15.21139 -14.99410 -14.74115 -14.23555 -13.91622 -13.62269 -13.36203 -13.03217 -12.88631 -12.63276 -12.50942 -12.29391 -12.12749 -12.00006 -11.82883 -11.68144 -11.37588 -11.35419 -11.18949 -11.03820 -10.65890 -10.28234 -10.27761 -10.07579 -9.95769 -9.72839 -9.20409 -8.89761 -8.73219 -8.01104 -7.75035 -6.58665 -4.26362 2.15626 2.76142 2.96029 3.00005 3.06237 3.17977 3.26244 3.32250 3.52763 4.05117 4.31282 4.43032 4.59287 4.77754 4.85258 4.91144 4.96378 5.04406 5.08396 5.14625 5.22592 5.33774 5.37279 5.41955 5.49716 5.53577 5.72739 5.84143 5.85522 5.93816 6.00361 6.04577 6.17344 6.31291 6.64070 6.86749 6.93437 7.20425 7.38547 7.42592 7.97186 8.17543 8.29618 8.48985 8.87498 9.23078 9.59504 10.48865 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.003146 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.403659 B = 8899.283069 C = 9925.536332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.133 4.133 5 C 0.142 3.858 6 N -0.378 5.378 7 C 0.098 3.902 8 C -0.252 4.252 9 C 0.574 3.426 10 O -0.598 6.598 11 N -0.449 5.449 12 C -0.350 4.350 13 H 0.109 0.891 14 C 0.071 3.929 15 N -0.843 5.843 16 Si 0.861 3.139 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.254 1.254 20 C 0.123 3.877 21 C 0.447 3.553 22 O -0.491 6.491 23 O -0.371 6.371 24 C 0.037 3.963 25 C 0.099 3.901 26 N -0.321 5.321 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.177 0.823 37 H 0.278 0.722 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 4.026 -3.611 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.012 4.012 4 C -0.171 4.171 5 C 0.020 3.980 6 N -0.158 5.158 7 C -0.052 4.052 8 C -0.267 4.267 9 C 0.366 3.634 10 O -0.483 6.483 11 N -0.169 5.169 12 C -0.477 4.477 13 H 0.126 0.874 14 C -0.139 4.139 15 N -0.476 5.476 16 Si 0.685 3.315 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.178 1.178 20 C -0.002 4.002 21 C 0.287 3.713 22 O -0.376 6.376 23 O -0.288 6.288 24 C -0.058 4.058 25 C -0.087 4.087 26 N -0.141 5.141 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.194 0.806 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.287 3.358 -3.210 13.136 hybrid contribution 0.791 1.042 -0.420 1.374 sum -11.496 4.400 -3.630 12.833 Atomic orbital electron populations 1.22747 0.80955 1.02854 0.99921 1.87909 1.19722 1.27803 1.95403 1.22412 0.93534 0.84925 1.00292 1.21762 0.92833 0.97025 1.05491 1.21412 0.75449 0.97569 1.03581 1.48377 1.05914 1.39648 1.21815 1.22771 0.89928 0.97680 0.94772 1.20126 0.92650 1.11075 1.02830 1.17417 0.83163 0.79904 0.82870 1.90619 1.87378 1.38600 1.31718 1.43018 1.02255 1.37268 1.34383 1.19076 1.25626 1.02176 1.00803 0.87367 1.25538 0.95424 0.97238 0.95704 1.69823 1.28978 1.28360 1.20418 0.87195 0.78826 0.85109 0.80357 1.19380 1.20575 1.17797 1.21507 0.91301 0.98135 0.89305 1.24978 0.78053 0.82642 0.85601 1.90611 1.45998 1.31235 1.69718 1.86528 1.45453 1.60843 1.35980 1.23108 1.01845 0.95867 0.84933 1.25813 0.93981 0.94234 0.94675 1.77214 1.04514 1.18589 1.13790 0.94038 0.94081 0.89569 0.92953 0.93138 0.90387 0.89200 0.89826 0.88872 0.80636 0.91112 0.87683 0.87188 0.88861 0.92298 0.92457 0.75702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.37 10.70 -35.23 -0.38 -4.75 16 3 C 0.07 0.60 5.94 37.16 0.22 0.82 16 4 C -0.13 -1.53 5.76 -26.73 -0.15 -1.68 16 5 C 0.14 1.58 6.49 -4.04 -0.03 1.55 16 6 N -0.38 -6.22 3.65 -60.79 -0.22 -6.45 16 7 C 0.10 1.76 11.26 -16.53 -0.19 1.57 16 8 C -0.25 -5.49 6.01 -105.06 -0.63 -6.12 16 9 C 0.57 13.86 7.47 -12.55 -0.09 13.77 16 10 O -0.60 -15.13 16.62 5.25 0.09 -15.04 16 11 N -0.45 -10.81 1.47 -117.34 -0.17 -10.98 16 12 C -0.35 -8.75 6.57 -14.98 -0.10 -8.85 16 13 H 0.11 2.92 6.30 -52.49 -0.33 2.59 16 14 C 0.07 1.75 5.11 -17.46 -0.09 1.66 16 15 N -0.84 -21.82 13.96 55.50 0.77 -21.04 16 16 Si 0.86 18.57 26.63 -169.99 -4.53 14.04 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.25 -5.18 5.37 56.52 0.30 -4.88 16 20 C 0.12 2.70 3.98 -5.19 -0.02 2.68 16 21 C 0.45 9.87 7.99 36.00 0.29 10.16 16 22 O -0.49 -12.29 16.08 -18.75 -0.30 -12.59 16 23 O -0.37 -6.90 10.57 -39.27 -0.41 -7.32 16 24 C 0.04 0.54 10.56 101.05 1.07 1.60 16 25 C 0.10 2.14 10.17 -16.97 -0.17 1.97 16 26 N -0.32 -6.35 12.33 30.87 0.38 -5.97 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.76 8.06 -51.93 -0.42 0.34 16 36 H 0.18 2.64 8.06 -52.48 -0.42 2.21 16 37 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.11 2.16 7.59 -51.93 -0.39 1.77 16 39 H 0.11 2.30 5.07 -51.93 -0.26 2.04 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.86 8.13 -51.92 -0.42 0.44 16 42 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 43 H 0.23 5.18 4.95 -52.49 -0.26 4.92 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -32.87 367.78 -3.99 -36.85 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.97 Total: 7.22 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 1.22 Total: 20.48 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.76 Total: -44.44 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.01 Total: -39.70 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.53 Total: 14.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.87 -3.99 -36.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599537406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.322 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds